Wall clock time and date at job start Wed Apr 1 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53007 * 109.47320 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47164 * 174.99979 * 4 2 1 6 6 C 1.52998 * 109.46800 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46750 * 179.97438 * 6 5 4 8 8 C 1.36934 * 119.99851 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00277 * 359.97438 * 8 7 6 10 10 C 1.38809 * 120.00319 * 179.97438 * 8 7 6 11 11 N 1.31624 * 119.99455 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00524 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46995 * 90.00086 * 12 10 8 14 14 H 1.48494 * 109.47427 * 209.99991 * 12 10 8 15 15 H 1.48501 * 109.47124 * 330.00778 * 12 10 8 16 16 N 1.46496 * 109.47177 * 120.00274 * 2 1 3 17 17 C 1.34782 * 119.99877 * 274.99818 * 16 2 1 18 18 O 1.21603 * 119.99884 * 0.02562 * 17 16 2 19 19 C 1.47421 * 120.00093 * 179.97438 * 17 16 2 20 20 C 1.39982 * 120.60928 * 3.65320 * 19 17 16 21 21 C 1.38328 * 118.36629 * 180.25878 * 20 19 17 22 22 C 1.38380 * 119.50874 * 359.75565 * 21 20 19 23 23 N 1.31839 * 121.21897 * 359.97438 * 22 21 20 24 24 C 1.32431 * 121.77795 * 0.02562 * 23 22 21 25 25 N 1.38261 * 119.83139 * 179.97438 * 24 23 22 26 26 C 1.48536 * 110.99987 * 306.36831 * 25 24 23 27 27 C 1.54934 * 103.23049 * 159.71960 * 26 25 24 28 28 C 1.54597 * 102.91963 * 322.58473 * 27 26 25 29 29 C 1.47899 * 110.99841 * 63.76040 * 25 24 23 30 30 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47478 * 299.99887 * 1 2 3 32 32 H 1.08999 * 109.47432 * 60.00259 * 1 2 3 33 33 H 1.08998 * 109.47024 * 294.99974 * 4 2 1 34 34 H 1.08997 * 109.46946 * 54.99433 * 4 2 1 35 35 H 1.09006 * 109.46860 * 299.99975 * 5 4 2 36 36 H 1.08995 * 109.47126 * 59.99978 * 5 4 2 37 37 H 1.09007 * 109.46787 * 299.99214 * 6 5 4 38 38 H 1.08995 * 109.47479 * 59.99973 * 6 5 4 39 39 H 0.96993 * 120.00043 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99442 * 180.02562 * 11 10 8 41 41 H 0.96994 * 120.00635 * 95.00186 * 16 2 1 42 42 H 1.07998 * 120.81240 * 0.02562 * 20 19 17 43 43 H 1.08001 * 120.24389 * 179.72413 * 21 20 19 44 44 H 1.07999 * 119.38509 * 180.02562 * 22 21 20 45 45 H 1.09004 * 110.66414 * 278.15476 * 26 25 24 46 46 H 1.08996 * 110.66884 * 41.27810 * 26 25 24 47 47 H 1.08999 * 110.72245 * 204.23076 * 27 26 25 48 48 H 1.08999 * 110.87589 * 81.00802 * 27 26 25 49 49 H 1.09002 * 110.30625 * 263.04391 * 28 27 26 50 50 H 1.09000 * 110.31200 * 140.87739 * 28 27 26 51 51 H 1.09000 * 109.91980 * 333.50981 * 29 25 24 52 52 H 1.08996 * 109.91991 * 94.80574 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0747 -1.3339 -2.5633 7 7 5.5348 -1.2299 -2.6253 8 6 6.2186 -1.8040 -3.6636 9 1 5.6816 -2.3337 -4.4366 10 6 7.6019 -1.7051 -3.7227 11 7 8.2563 -1.0599 -2.7804 12 14 8.5348 -2.4888 -5.1386 13 1 8.6658 -1.5095 -6.2473 14 1 9.8856 -2.8965 -4.6761 15 1 7.7943 -3.6833 -5.6184 16 7 2.0183 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8574 1.1615 2.4118 19 6 2.6379 -0.7134 3.5609 20 6 3.0459 -2.0508 3.4952 21 6 3.4933 -2.6592 4.6541 22 6 3.5301 -1.9357 5.8332 23 7 3.1465 -0.6750 5.8736 24 6 2.7098 -0.0440 4.7944 25 7 2.3171 1.2788 4.8828 26 6 1.3018 1.4623 5.9514 27 6 1.3812 2.9787 6.2591 28 6 2.8927 3.2781 6.1344 29 6 3.4558 2.1459 5.2553 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4371 -1.3573 36 1 3.9994 -1.0727 -0.4260 37 1 3.7864 -2.3842 -2.5200 38 1 3.6401 -0.8740 -3.4508 39 1 6.0171 -0.7551 -1.9305 40 1 9.2229 -0.9905 -2.8219 41 1 2.2490 -1.6317 1.1526 42 1 3.0086 -2.5954 2.5633 43 1 3.8112 -3.6912 4.6390 44 1 3.8802 -2.4126 6.7368 45 1 0.3092 1.1948 5.5889 46 1 1.5612 0.8766 6.8332 47 1 1.0291 3.1861 7.2696 48 1 0.8125 3.5537 5.5283 49 1 3.3636 3.2636 7.1173 50 1 3.0487 4.2437 5.6534 51 1 4.1922 1.5711 5.8169 52 1 3.9128 2.5644 4.3586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734243857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:03 Heat of formation + Delta-G solvation = 22.694771 kcal Electronic energy + Delta-G solvation = -30468.567749 eV Core-core repulsion = 26468.423750 eV Total energy + Delta-G solvation = -4000.143999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.19982 -39.39320 -38.37270 -36.61748 -34.80042 -33.43941 -32.85516 -32.25607 -30.87145 -29.50043 -29.12442 -29.06990 -25.68556 -24.81359 -23.88368 -22.96247 -21.43557 -21.27974 -21.01200 -20.77672 -20.43579 -18.09897 -17.39026 -17.11528 -16.99613 -16.12319 -15.76701 -15.25523 -15.09015 -14.76717 -14.63268 -14.36062 -14.19861 -13.87872 -13.71946 -13.43493 -13.39202 -13.29749 -12.96556 -12.69360 -12.61178 -12.47088 -12.27291 -12.12222 -12.07160 -11.55873 -11.38526 -11.28523 -11.11851 -10.85050 -10.79024 -10.77155 -10.44161 -10.38738 -10.17751 -10.16908 -10.00057 -9.78531 -9.67101 -9.22554 -8.96663 -8.85286 -8.63409 -6.90229 -5.74976 -3.03648 0.41312 0.82329 2.85306 3.11059 3.43937 3.46143 3.48672 3.50624 3.59087 4.09977 4.43908 4.47064 4.53235 4.58603 4.60738 4.72020 4.77299 4.84602 4.95799 5.08445 5.14490 5.19781 5.22432 5.31977 5.46095 5.49517 5.54826 5.58830 5.60796 5.61519 5.64285 5.67705 5.72710 5.78992 5.83547 5.89592 5.98218 6.00201 6.09180 6.11554 6.15760 6.24414 6.38403 6.42938 6.54653 6.57256 6.88631 6.91910 7.06639 7.46805 7.60041 7.70716 8.32606 8.44147 9.54817 10.14189 10.48460 11.48014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.002289 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.452978 B =12231.495874 C =12883.558470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.723 5.723 17 C 0.559 3.441 18 O -0.494 6.494 19 C -0.156 4.156 20 C -0.040 4.040 21 C -0.182 4.182 22 C 0.132 3.868 23 N -0.518 5.518 24 C 0.339 3.661 25 N -0.447 5.447 26 C 0.041 3.959 27 C -0.120 4.120 28 C -0.126 4.126 29 C 0.047 3.953 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.395 0.605 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.159 0.841 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.053 0.947 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 0.917 20.687 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.377 5.377 17 C 0.344 3.656 18 O -0.368 6.368 19 C -0.163 4.163 20 C -0.066 4.066 21 C -0.202 4.202 22 C -0.027 4.027 23 N -0.231 5.231 24 C 0.110 3.890 25 N -0.170 5.170 26 C -0.085 4.085 27 C -0.158 4.158 28 C -0.165 4.165 29 C -0.080 4.080 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.230 0.770 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.071 0.929 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.548 2.327 20.832 27.337 hybrid contribution 1.310 -1.675 -0.647 2.223 sum -16.238 0.652 20.185 25.914 Atomic orbital electron populations 1.22165 0.95538 1.01857 1.02403 1.21004 0.93495 0.97808 0.83623 0.89236 1.21853 0.96842 1.00712 0.96717 1.21726 0.93679 1.01491 0.99398 1.20653 0.86164 0.96399 0.94264 1.42388 1.00230 1.66262 1.28986 1.19242 0.89449 1.27042 1.01282 0.91226 1.24758 0.96469 1.01290 0.98658 1.69670 1.07192 1.47064 1.34346 0.86185 0.79366 0.78817 0.81803 1.21709 1.21775 1.20783 1.46038 1.68070 1.13908 1.09643 1.17734 0.78641 0.86831 0.82389 1.90844 1.47550 1.14377 1.84039 1.20794 1.05553 0.94756 0.95206 1.21848 0.92501 0.93001 0.99273 1.22106 1.02489 1.02194 0.93415 1.22771 0.92882 0.89146 0.97938 1.67846 1.12422 1.11138 1.31654 1.19997 0.90284 0.91124 0.87639 1.62829 1.09947 1.00644 1.43546 1.23275 0.95732 0.96838 0.92693 1.22447 0.96416 0.95269 1.01633 1.22368 0.95808 0.98742 0.99532 1.22867 0.92128 0.93648 0.99328 0.92701 0.92247 0.91624 0.91533 0.90267 0.91923 0.92162 0.96623 0.96496 0.78343 0.93539 0.77001 0.83951 0.83873 0.82350 0.90254 0.92159 0.90959 0.90452 0.91382 0.90712 0.92881 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.68 2.57 -67.93 -0.17 1.51 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 5 C -0.12 -1.98 5.22 -26.73 -0.14 -2.12 16 6 C 0.15 3.06 6.26 -4.04 -0.03 3.04 16 7 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 8 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 12 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 N -0.72 -8.23 4.48 -54.88 -0.25 -8.47 16 17 C 0.56 7.59 7.73 -12.52 -0.10 7.50 16 18 O -0.49 -8.19 14.73 5.27 0.08 -8.11 16 19 C -0.16 -1.91 5.91 -104.64 -0.62 -2.53 16 20 C -0.04 -0.37 9.63 -38.90 -0.37 -0.74 16 21 C -0.18 -1.44 10.09 -39.50 -0.40 -1.84 16 22 C 0.13 1.15 11.16 -17.50 -0.20 0.96 16 23 N -0.52 -5.94 8.80 -12.20 -0.11 -6.05 16 24 C 0.34 4.32 5.40 -155.18 -0.84 3.48 16 25 N -0.45 -5.73 3.23 -169.01 -0.55 -6.27 16 26 C 0.04 0.44 6.46 -1.90 -0.01 0.42 16 27 C -0.12 -1.05 7.06 -24.87 -0.18 -1.22 16 28 C -0.13 -1.15 6.93 -25.37 -0.18 -1.32 16 29 C 0.05 0.55 6.60 -2.75 -0.02 0.53 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 40 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.40 3.69 6.71 -40.82 -0.27 3.42 16 42 H 0.14 1.01 6.53 -52.49 -0.34 0.67 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.64 7.31 -51.93 -0.38 0.26 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.05 0.64 7.34 -51.93 -0.38 0.26 16 52 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -34.82 418.65 -11.21 -46.03 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.80 Total: 9.09 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.26 Total: -2.73 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -0.51 Total: -68.19 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.11 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.82 -11.21 -46.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734243857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.727 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds