Wall clock time and date at job start Wed Apr 1 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53007 * 109.47320 * 240.00281 * 2 1 3 5 5 C 1.52997 * 109.47164 * 174.99979 * 4 2 1 6 6 C 1.52998 * 109.46800 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46750 * 179.97438 * 6 5 4 8 8 C 1.36934 * 119.99851 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00277 * 359.97438 * 8 7 6 10 10 C 1.38809 * 120.00319 * 179.97438 * 8 7 6 11 11 N 1.31624 * 119.99455 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00524 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46995 * 90.00086 * 12 10 8 14 14 H 1.48494 * 109.47427 * 209.99991 * 12 10 8 15 15 H 1.48501 * 109.47124 * 330.00778 * 12 10 8 16 16 N 1.46496 * 109.47177 * 120.00274 * 2 1 3 17 17 C 1.34782 * 119.99877 * 274.99818 * 16 2 1 18 18 O 1.21603 * 119.99884 * 0.02562 * 17 16 2 19 19 C 1.47421 * 120.00093 * 179.97438 * 17 16 2 20 20 C 1.39982 * 120.60928 * 3.65320 * 19 17 16 21 21 C 1.38328 * 118.36629 * 180.25878 * 20 19 17 22 22 C 1.38380 * 119.50874 * 359.75565 * 21 20 19 23 23 N 1.31839 * 121.21897 * 359.97438 * 22 21 20 24 24 C 1.32431 * 121.77795 * 0.02562 * 23 22 21 25 25 N 1.38261 * 119.83139 * 179.97438 * 24 23 22 26 26 C 1.48536 * 110.99987 * 306.36831 * 25 24 23 27 27 C 1.54934 * 103.23049 * 159.71960 * 26 25 24 28 28 C 1.54597 * 102.91963 * 322.58473 * 27 26 25 29 29 C 1.47899 * 110.99841 * 63.76040 * 25 24 23 30 30 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47478 * 299.99887 * 1 2 3 32 32 H 1.08999 * 109.47432 * 60.00259 * 1 2 3 33 33 H 1.08998 * 109.47024 * 294.99974 * 4 2 1 34 34 H 1.08997 * 109.46946 * 54.99433 * 4 2 1 35 35 H 1.09006 * 109.46860 * 299.99975 * 5 4 2 36 36 H 1.08995 * 109.47126 * 59.99978 * 5 4 2 37 37 H 1.09007 * 109.46787 * 299.99214 * 6 5 4 38 38 H 1.08995 * 109.47479 * 59.99973 * 6 5 4 39 39 H 0.96993 * 120.00043 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99442 * 180.02562 * 11 10 8 41 41 H 0.96994 * 120.00635 * 95.00186 * 16 2 1 42 42 H 1.07998 * 120.81240 * 0.02562 * 20 19 17 43 43 H 1.08001 * 120.24389 * 179.72413 * 21 20 19 44 44 H 1.07999 * 119.38509 * 180.02562 * 22 21 20 45 45 H 1.09004 * 110.66414 * 278.15476 * 26 25 24 46 46 H 1.08996 * 110.66884 * 41.27810 * 26 25 24 47 47 H 1.08999 * 110.72245 * 204.23076 * 27 26 25 48 48 H 1.08999 * 110.87589 * 81.00802 * 27 26 25 49 49 H 1.09002 * 110.30625 * 263.04391 * 28 27 26 50 50 H 1.09000 * 110.31200 * 140.87739 * 28 27 26 51 51 H 1.09000 * 109.91980 * 333.50981 * 29 25 24 52 52 H 1.08996 * 109.91991 * 94.80574 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0747 -1.3339 -2.5633 7 7 5.5348 -1.2299 -2.6253 8 6 6.2186 -1.8040 -3.6636 9 1 5.6816 -2.3337 -4.4366 10 6 7.6019 -1.7051 -3.7227 11 7 8.2563 -1.0599 -2.7804 12 14 8.5348 -2.4888 -5.1386 13 1 8.6658 -1.5095 -6.2473 14 1 9.8856 -2.8965 -4.6761 15 1 7.7943 -3.6833 -5.6184 16 7 2.0183 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8574 1.1615 2.4118 19 6 2.6379 -0.7134 3.5609 20 6 3.0459 -2.0508 3.4952 21 6 3.4933 -2.6592 4.6541 22 6 3.5301 -1.9357 5.8332 23 7 3.1465 -0.6750 5.8736 24 6 2.7098 -0.0440 4.7944 25 7 2.3171 1.2788 4.8828 26 6 1.3018 1.4623 5.9514 27 6 1.3812 2.9787 6.2591 28 6 2.8927 3.2781 6.1344 29 6 3.4558 2.1459 5.2553 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4371 -1.3573 36 1 3.9994 -1.0727 -0.4260 37 1 3.7864 -2.3842 -2.5200 38 1 3.6401 -0.8740 -3.4508 39 1 6.0171 -0.7551 -1.9305 40 1 9.2229 -0.9905 -2.8219 41 1 2.2490 -1.6317 1.1526 42 1 3.0086 -2.5954 2.5633 43 1 3.8112 -3.6912 4.6390 44 1 3.8802 -2.4126 6.7368 45 1 0.3092 1.1948 5.5889 46 1 1.5612 0.8766 6.8332 47 1 1.0291 3.1861 7.2696 48 1 0.8125 3.5537 5.5283 49 1 3.3636 3.2636 7.1173 50 1 3.0487 4.2437 5.6534 51 1 4.1922 1.5711 5.8169 52 1 3.9128 2.5644 4.3586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734243857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:02 Heat of formation + Delta-G solvation = 0.821461 kcal Electronic energy + Delta-G solvation = -30469.516247 eV Core-core repulsion = 26468.423750 eV Total energy + Delta-G solvation = -4001.092497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02548 -40.37333 -39.16518 -37.85347 -36.45702 -34.44778 -33.83436 -33.60126 -32.18140 -30.83678 -30.00053 -29.90632 -27.22760 -25.69723 -24.86771 -24.50692 -22.57401 -22.17713 -22.05909 -21.80058 -21.42719 -19.14492 -18.93090 -18.21958 -17.96628 -17.07719 -16.68073 -16.56087 -16.07483 -15.95577 -15.80839 -15.49694 -15.40127 -15.17560 -15.07740 -14.68802 -14.38042 -14.18691 -14.05759 -13.77956 -13.44617 -13.40133 -13.28933 -13.15540 -13.06185 -12.97986 -12.77574 -12.37778 -12.33077 -12.23127 -12.17049 -12.05540 -11.84958 -11.70595 -11.51492 -11.47748 -11.02808 -10.95783 -10.93327 -10.75108 -10.08345 -9.88588 -9.50797 -9.00717 -7.95843 -5.25248 -0.38865 0.08578 1.46687 1.49026 1.57464 1.95250 2.18649 2.55684 2.65049 2.75378 3.36305 3.37855 3.61710 3.69371 3.78155 3.80716 3.83341 3.97448 4.00452 4.09461 4.12953 4.23291 4.31316 4.31379 4.41106 4.50013 4.53964 4.61172 4.66836 4.70469 4.80233 4.84256 4.87801 4.88026 4.90589 4.95125 4.95988 5.02273 5.04851 5.12396 5.15559 5.23025 5.33949 5.39418 5.41630 5.44051 5.50843 5.64209 5.72698 6.22691 6.26600 6.59751 6.79115 7.31983 7.34999 8.09449 8.31359 9.27994 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.002289 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.452978 B =12231.495874 C =12883.558470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.288 1.288 14 H -0.295 1.295 15 H -0.266 1.266 16 N -0.714 5.714 17 C 0.556 3.444 18 O -0.536 6.536 19 C -0.183 4.183 20 C -0.040 4.040 21 C -0.172 4.172 22 C 0.128 3.872 23 N -0.535 5.535 24 C 0.318 3.682 25 N -0.467 5.467 26 C 0.042 3.958 27 C -0.113 4.113 28 C -0.121 4.121 29 C 0.047 3.953 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.407 0.593 42 H 0.165 0.835 43 H 0.179 0.821 44 H 0.192 0.808 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.045 0.955 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 -1.296 20.738 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.215 1.215 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.367 5.367 17 C 0.342 3.658 18 O -0.412 6.412 19 C -0.190 4.190 20 C -0.067 4.067 21 C -0.192 4.192 22 C -0.031 4.031 23 N -0.248 5.248 24 C 0.089 3.911 25 N -0.190 5.190 26 C -0.084 4.084 27 C -0.151 4.151 28 C -0.159 4.159 29 C -0.080 4.080 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.244 0.756 42 H 0.182 0.818 43 H 0.197 0.803 44 H 0.209 0.791 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.531 0.075 20.859 27.901 hybrid contribution 1.577 -1.059 -0.645 2.006 sum -16.954 -0.983 20.214 26.401 Atomic orbital electron populations 1.22076 0.93895 1.02904 1.02185 1.20923 0.94655 0.96455 0.83613 0.91934 1.21751 0.93480 1.02298 0.97133 1.21583 0.96544 0.99593 0.97293 1.20864 0.83094 0.97479 0.96151 1.42668 1.02598 1.65939 1.28130 1.19681 0.90004 1.26287 1.01753 0.90424 1.25635 0.97571 1.02518 1.01455 1.69837 1.07065 1.48949 1.36465 0.85103 0.77649 0.78284 0.78517 1.21478 1.22158 1.19089 1.45965 1.67406 1.14361 1.09017 1.18044 0.78029 0.86501 0.83218 1.90812 1.49542 1.16103 1.84765 1.20832 1.07441 0.96206 0.94503 1.22163 0.91709 0.91879 1.00920 1.22510 1.00764 1.03566 0.92312 1.23436 0.91586 0.88361 0.99674 1.67862 1.13120 1.12510 1.31295 1.20133 0.91319 0.91318 0.88331 1.62759 1.10493 1.01283 1.44510 1.23270 0.94924 0.98067 0.92118 1.22445 0.96087 0.93802 1.02781 1.22364 0.95988 0.97820 0.99726 1.22817 0.92136 0.94376 0.98649 0.90936 0.93994 0.90342 0.89198 0.89092 0.93841 0.92455 0.95416 0.96273 0.79780 0.94039 0.75623 0.81783 0.80318 0.79149 0.90940 0.92256 0.88561 0.91104 0.89842 0.90259 0.93625 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.35 2.57 44.99 0.12 3.46 16 3 H 0.06 1.78 7.58 -2.39 -0.02 1.77 16 4 C -0.11 -2.34 4.75 30.60 0.15 -2.20 16 5 C -0.11 -3.48 5.22 30.59 0.16 -3.32 16 6 C 0.15 5.85 6.26 86.38 0.54 6.39 16 7 N -0.75 -38.96 5.60 -343.44 -1.92 -40.88 16 8 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 9 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 10 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 11 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 12 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 N -0.71 -15.93 4.48 -445.81 -2.00 -17.93 16 17 C 0.56 15.62 7.73 86.66 0.67 16.29 16 18 O -0.54 -18.88 14.73 -4.04 -0.06 -18.94 16 19 C -0.18 -4.54 5.91 -19.88 -0.12 -4.66 16 20 C -0.04 -0.69 9.63 22.71 0.22 -0.47 16 21 C -0.17 -2.28 10.09 22.33 0.23 -2.05 16 22 C 0.13 2.01 11.16 84.73 0.95 2.95 16 23 N -0.54 -12.13 8.80 -192.52 -1.69 -13.83 16 24 C 0.32 8.36 5.40 133.65 0.72 9.08 16 25 N -0.47 -12.68 3.23 -688.64 -2.22 -14.90 16 26 C 0.04 0.93 6.46 86.65 0.56 1.49 16 27 C -0.11 -1.98 7.06 31.80 0.22 -1.76 16 28 C -0.12 -2.22 6.93 31.48 0.22 -2.00 16 29 C 0.05 1.17 6.60 86.45 0.57 1.74 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 37 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 40 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.41 6.96 6.71 -92.71 -0.62 6.34 16 42 H 0.16 1.94 6.53 -2.91 -0.02 1.92 16 43 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.29 7.31 -2.39 -0.02 1.27 16 47 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.05 1.17 7.34 -2.39 -0.02 1.15 16 52 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.68 418.65 1.18 -76.50 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.42 Total: 36.45 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 7.19 Total: 5.52 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -7.56 Total: -147.90 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.68 1.18 -76.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734243857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.320 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds