Wall clock time and date at job start Wed Apr 1 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46564 * 2 1 4 4 C 1.53003 * 109.47443 * 120.00141 * 2 1 3 5 5 C 1.52997 * 109.47017 * 185.00578 * 4 2 1 6 6 C 1.52999 * 109.46686 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47123 * 179.97438 * 6 5 4 8 8 C 1.36936 * 120.00240 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99987 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00122 * 180.02562 * 8 7 6 11 11 N 1.31620 * 120.00049 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00075 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46934 * 90.00066 * 12 10 8 14 14 H 1.48496 * 109.47333 * 210.00235 * 12 10 8 15 15 H 1.48497 * 109.47291 * 330.00254 * 12 10 8 16 16 N 1.46497 * 109.47243 * 240.00577 * 2 1 3 17 17 C 1.34774 * 120.00659 * 84.99882 * 16 2 1 18 18 O 1.21592 * 119.99475 * 359.97438 * 17 16 2 19 19 C 1.47532 * 120.00546 * 179.97438 * 17 16 2 20 20 C 1.40355 * 120.47909 * 179.97438 * 19 17 16 21 21 C 1.36856 * 118.49423 * 179.72621 * 20 19 17 22 22 C 1.39397 * 119.38154 * 0.02562 * 21 20 19 23 23 N 1.38450 * 119.54099 * 179.97438 * 22 21 20 24 24 C 1.48540 * 110.99764 * 62.60678 * 23 22 21 25 25 C 1.54935 * 103.22848 * 159.72120 * 24 23 22 26 26 C 1.54600 * 102.91775 * 322.58442 * 25 24 23 27 27 C 1.47901 * 110.99995 * 179.97438 * 23 22 21 28 28 N 1.32602 * 120.92002 * 0.02562 * 22 21 20 29 29 C 1.31684 * 121.64015 * 359.95528 * 28 22 21 30 30 H 1.09004 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47567 * 299.99535 * 1 2 3 32 32 H 1.09003 * 109.47526 * 60.00281 * 1 2 3 33 33 H 1.09000 * 109.46723 * 305.00601 * 4 2 1 34 34 H 1.08994 * 109.46574 * 64.99951 * 4 2 1 35 35 H 1.08999 * 109.46869 * 299.99580 * 5 4 2 36 36 H 1.08990 * 109.47513 * 60.00115 * 5 4 2 37 37 H 1.09004 * 109.47452 * 299.99566 * 6 5 4 38 38 H 1.09002 * 109.47489 * 59.99946 * 6 5 4 39 39 H 0.97006 * 119.99866 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00062 * 180.02562 * 11 10 8 41 41 H 0.97001 * 120.00034 * 264.99172 * 16 2 1 42 42 H 1.07998 * 120.74957 * 359.70656 * 20 19 17 43 43 H 1.08002 * 120.30417 * 179.97438 * 21 20 19 44 44 H 1.09007 * 110.66188 * 278.15231 * 24 23 22 45 45 H 1.08997 * 110.66541 * 41.28418 * 24 23 22 46 46 H 1.08998 * 110.72182 * 204.22710 * 25 24 23 47 47 H 1.09002 * 110.87645 * 81.01309 * 25 24 23 48 48 H 1.09004 * 110.30695 * 263.03550 * 26 25 24 49 49 H 1.09003 * 110.30824 * 140.87409 * 26 25 24 50 50 H 1.08996 * 109.91853 * 333.51504 * 27 23 22 51 51 H 1.09009 * 109.91439 * 94.80681 * 27 23 22 52 52 H 1.08002 * 119.74108 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3350 2.5625 7 7 5.5350 -1.2320 2.6240 8 6 6.2189 -1.8072 3.6615 9 1 5.6819 -2.3364 4.4348 10 6 7.6023 -1.7092 3.7200 11 7 8.2596 -2.2616 4.7176 12 14 8.5311 -0.7932 2.3830 13 1 8.6621 0.6366 2.7621 14 1 9.8820 -1.3884 2.2221 15 1 7.7876 -0.8996 1.1020 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3572 18 8 1.8574 1.1615 -2.4118 19 6 2.6394 -0.7134 -3.5617 20 6 2.7768 -0.0230 -4.7759 21 6 3.2426 -0.7064 -5.8664 22 6 3.5639 -2.0570 -5.7411 23 7 4.0349 -2.7516 -6.8423 24 6 5.3243 -2.1868 -7.3163 25 6 5.9352 -3.3445 -8.1452 26 6 5.5307 -4.5989 -7.3371 27 6 4.3154 -4.1625 -6.4987 28 7 3.4239 -2.6860 -4.5822 29 6 2.9795 -2.0659 -3.5089 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0726 0.4259 36 1 3.8531 0.4370 1.3574 37 1 3.6403 -0.8759 3.4506 38 1 3.7867 -2.3853 2.5184 39 1 6.0174 -0.7570 1.9293 40 1 9.2263 -2.1928 4.7587 41 1 2.2491 -1.6316 -1.1527 42 1 2.5205 1.0236 -4.8482 43 1 3.3593 -0.2040 -6.8153 44 1 5.1534 -1.3124 -7.9445 45 1 5.9677 -1.9362 -6.4730 46 1 7.0200 -3.2517 -8.1962 47 1 5.5045 -3.3750 -9.1460 48 1 6.3479 -4.9090 -6.6857 49 1 5.2544 -5.4101 -8.0108 50 1 4.5469 -4.2472 -5.4369 51 1 3.4534 -4.7829 -6.7441 52 1 2.8778 -2.6081 -2.5804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734258477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:08 Heat of formation + Delta-G solvation = 17.826412 kcal Electronic energy + Delta-G solvation = -29761.652967 eV Core-core repulsion = 25761.297861 eV Total energy + Delta-G solvation = -4000.355107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.35713 -39.99153 -38.44878 -36.86635 -35.05580 -33.51284 -33.00416 -32.52708 -31.41010 -29.99955 -29.42543 -29.15915 -25.95115 -24.65854 -24.10483 -22.82936 -22.05465 -21.27453 -20.99893 -20.90026 -20.65537 -18.42985 -17.73605 -17.51228 -17.15126 -16.40851 -15.93049 -15.34968 -15.25242 -14.97371 -14.69807 -14.62135 -14.34146 -14.14068 -13.95622 -13.71330 -13.59531 -13.40766 -13.17211 -12.90919 -12.72606 -12.63849 -12.53257 -12.26618 -12.22179 -11.82841 -11.72582 -11.65688 -11.31184 -11.03356 -10.98516 -10.92512 -10.58156 -10.48711 -10.41180 -10.32153 -10.18312 -10.11706 -9.72145 -9.59385 -9.25939 -8.89233 -8.60867 -7.22819 -5.77036 -3.12242 0.29035 0.89495 2.56505 2.93801 3.12990 3.37028 3.40428 3.44681 3.53533 3.84745 4.11149 4.28138 4.42591 4.47410 4.51942 4.58971 4.60301 4.69824 4.75234 4.84075 4.93984 4.97901 5.05348 5.17077 5.22627 5.33258 5.33920 5.35290 5.40682 5.48142 5.50774 5.52990 5.53354 5.59846 5.65906 5.71390 5.76364 5.85646 5.91706 5.98274 6.00417 6.07445 6.09719 6.11226 6.27645 6.36721 6.65352 6.74143 6.77631 7.29598 7.46210 7.99642 8.01125 8.42388 9.21661 9.94317 10.14293 11.41522 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.002672 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.881942 B =10477.354289 C =13211.557644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 N -0.717 5.717 17 C 0.568 3.432 18 O -0.539 6.539 19 C -0.214 4.214 20 C 0.003 3.997 21 C -0.188 4.188 22 C 0.326 3.674 23 N -0.464 5.464 24 C 0.043 3.957 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.033 3.967 28 N -0.520 5.520 29 C 0.165 3.835 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.399 0.601 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -0.252 -27.011 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.168 4.168 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.369 5.369 17 C 0.355 3.645 18 O -0.417 6.417 19 C -0.221 4.221 20 C -0.023 4.023 21 C -0.210 4.210 22 C 0.093 3.907 23 N -0.181 5.181 24 C -0.082 4.082 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.094 4.094 28 N -0.234 5.234 29 C 0.006 3.994 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.235 0.765 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.789 -0.405 -27.209 30.506 hybrid contribution 1.124 0.893 -0.320 1.470 sum -12.665 0.487 -27.529 30.306 Atomic orbital electron populations 1.22172 0.95201 1.02150 1.02539 1.21086 0.93809 0.97797 0.83568 0.89153 1.21852 0.96538 1.01044 0.96738 1.21790 0.94150 1.01406 0.99470 1.20632 0.84859 0.97089 0.94462 1.42738 1.01739 1.67156 1.28715 1.19076 0.89921 1.27489 1.00880 0.89229 1.24679 0.96194 1.00579 0.97813 1.69703 1.07312 1.49364 1.31929 0.86536 0.79622 0.80017 0.82287 1.21048 1.21704 1.20449 1.46028 1.67106 1.14092 1.09631 1.17903 0.77441 0.86390 0.82788 1.90778 1.50563 1.15407 1.84991 1.20870 1.09413 0.95943 0.95848 1.21312 0.90130 1.00647 0.90219 1.21282 1.05225 0.93885 1.00591 1.20156 0.92620 0.90173 0.87717 1.61751 1.26574 1.04328 1.25461 1.23362 0.87151 0.98729 0.98992 1.22519 1.00863 0.93565 0.99249 1.22464 0.97692 0.98261 0.98825 1.22937 0.98454 0.86728 1.01242 1.67629 1.17659 1.39509 0.98589 1.22811 0.89912 0.90517 0.96170 0.92418 0.91376 0.92273 0.89911 0.91155 0.92186 0.91932 0.95570 0.95709 0.80743 0.93068 0.76530 0.83351 0.83983 0.88973 0.92296 0.90260 0.90288 0.90922 0.90600 0.89581 0.89885 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.14 16 2 C 0.14 1.49 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.12 -1.32 4.75 -26.73 -0.13 -1.45 16 5 C -0.13 -1.88 5.22 -26.73 -0.14 -2.02 16 6 C 0.16 2.96 6.26 -4.04 -0.03 2.94 16 7 N -0.76 -18.33 5.41 -59.91 -0.32 -18.65 16 8 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 9 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 10 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 11 N -0.93 -29.72 13.97 55.49 0.78 -28.94 16 12 Si 0.88 22.51 27.74 -169.99 -4.71 17.79 16 13 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 15 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 16 N -0.72 -7.34 4.48 -54.85 -0.25 -7.59 16 17 C 0.57 6.91 7.73 -12.47 -0.10 6.81 16 18 O -0.54 -8.24 16.07 5.28 0.08 -8.15 16 19 C -0.21 -2.30 5.89 -104.82 -0.62 -2.92 16 20 C 0.00 0.03 9.65 -39.29 -0.38 -0.35 16 21 C -0.19 -1.68 9.38 -39.65 -0.37 -2.05 16 22 C 0.33 3.28 6.20 -155.29 -0.96 2.32 16 23 N -0.46 -4.05 5.28 -169.29 -0.89 -4.95 16 24 C 0.04 0.29 6.03 -1.90 -0.01 0.28 16 25 C -0.12 -0.67 7.06 -24.87 -0.18 -0.84 16 26 C -0.13 -0.82 6.93 -25.39 -0.18 -1.00 16 27 C 0.03 0.27 6.34 -2.77 -0.02 0.25 16 28 N -0.52 -5.65 8.10 -12.14 -0.10 -5.75 16 29 C 0.17 1.65 10.71 -17.12 -0.18 1.47 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.40 3.31 6.65 -40.82 -0.27 3.03 16 42 H 0.15 1.36 7.73 -52.49 -0.41 0.96 16 43 H 0.14 0.95 8.02 -52.49 -0.42 0.53 16 44 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 45 H 0.06 0.45 7.99 -51.93 -0.42 0.03 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.84 6.48 -51.93 -0.34 0.50 16 51 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 52 H 0.16 1.23 6.41 -52.49 -0.34 0.89 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -35.27 416.43 -11.22 -46.49 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.72 Total: 7.06 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.36 Total: -3.58 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.79 Total: -65.89 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.27 -11.22 -46.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734258477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.315 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds