Wall clock time and date at job start Wed Apr 1 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46564 * 2 1 4 4 C 1.53003 * 109.47443 * 120.00141 * 2 1 3 5 5 C 1.52997 * 109.47017 * 185.00578 * 4 2 1 6 6 C 1.52999 * 109.46686 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47123 * 179.97438 * 6 5 4 8 8 C 1.36936 * 120.00240 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99987 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00122 * 180.02562 * 8 7 6 11 11 N 1.31620 * 120.00049 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00075 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46934 * 90.00066 * 12 10 8 14 14 H 1.48496 * 109.47333 * 210.00235 * 12 10 8 15 15 H 1.48497 * 109.47291 * 330.00254 * 12 10 8 16 16 N 1.46497 * 109.47243 * 240.00577 * 2 1 3 17 17 C 1.34774 * 120.00659 * 84.99882 * 16 2 1 18 18 O 1.21592 * 119.99475 * 359.97438 * 17 16 2 19 19 C 1.47532 * 120.00546 * 179.97438 * 17 16 2 20 20 C 1.40355 * 120.47909 * 179.97438 * 19 17 16 21 21 C 1.36856 * 118.49423 * 179.72621 * 20 19 17 22 22 C 1.39397 * 119.38154 * 0.02562 * 21 20 19 23 23 N 1.38450 * 119.54099 * 179.97438 * 22 21 20 24 24 C 1.48540 * 110.99764 * 62.60678 * 23 22 21 25 25 C 1.54935 * 103.22848 * 159.72120 * 24 23 22 26 26 C 1.54600 * 102.91775 * 322.58442 * 25 24 23 27 27 C 1.47901 * 110.99995 * 179.97438 * 23 22 21 28 28 N 1.32602 * 120.92002 * 0.02562 * 22 21 20 29 29 C 1.31684 * 121.64015 * 359.95528 * 28 22 21 30 30 H 1.09004 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47567 * 299.99535 * 1 2 3 32 32 H 1.09003 * 109.47526 * 60.00281 * 1 2 3 33 33 H 1.09000 * 109.46723 * 305.00601 * 4 2 1 34 34 H 1.08994 * 109.46574 * 64.99951 * 4 2 1 35 35 H 1.08999 * 109.46869 * 299.99580 * 5 4 2 36 36 H 1.08990 * 109.47513 * 60.00115 * 5 4 2 37 37 H 1.09004 * 109.47452 * 299.99566 * 6 5 4 38 38 H 1.09002 * 109.47489 * 59.99946 * 6 5 4 39 39 H 0.97006 * 119.99866 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00062 * 180.02562 * 11 10 8 41 41 H 0.97001 * 120.00034 * 264.99172 * 16 2 1 42 42 H 1.07998 * 120.74957 * 359.70656 * 20 19 17 43 43 H 1.08002 * 120.30417 * 179.97438 * 21 20 19 44 44 H 1.09007 * 110.66188 * 278.15231 * 24 23 22 45 45 H 1.08997 * 110.66541 * 41.28418 * 24 23 22 46 46 H 1.08998 * 110.72182 * 204.22710 * 25 24 23 47 47 H 1.09002 * 110.87645 * 81.01309 * 25 24 23 48 48 H 1.09004 * 110.30695 * 263.03550 * 26 25 24 49 49 H 1.09003 * 110.30824 * 140.87409 * 26 25 24 50 50 H 1.08996 * 109.91853 * 333.51504 * 27 23 22 51 51 H 1.09009 * 109.91439 * 94.80681 * 27 23 22 52 52 H 1.08002 * 119.74108 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3350 2.5625 7 7 5.5350 -1.2320 2.6240 8 6 6.2189 -1.8072 3.6615 9 1 5.6819 -2.3364 4.4348 10 6 7.6023 -1.7092 3.7200 11 7 8.2596 -2.2616 4.7176 12 14 8.5311 -0.7932 2.3830 13 1 8.6621 0.6366 2.7621 14 1 9.8820 -1.3884 2.2221 15 1 7.7876 -0.8996 1.1020 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3572 18 8 1.8574 1.1615 -2.4118 19 6 2.6394 -0.7134 -3.5617 20 6 2.7768 -0.0230 -4.7759 21 6 3.2426 -0.7064 -5.8664 22 6 3.5639 -2.0570 -5.7411 23 7 4.0349 -2.7516 -6.8423 24 6 5.3243 -2.1868 -7.3163 25 6 5.9352 -3.3445 -8.1452 26 6 5.5307 -4.5989 -7.3371 27 6 4.3154 -4.1625 -6.4987 28 7 3.4239 -2.6860 -4.5822 29 6 2.9795 -2.0659 -3.5089 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0726 0.4259 36 1 3.8531 0.4370 1.3574 37 1 3.6403 -0.8759 3.4506 38 1 3.7867 -2.3853 2.5184 39 1 6.0174 -0.7570 1.9293 40 1 9.2263 -2.1928 4.7587 41 1 2.2491 -1.6316 -1.1527 42 1 2.5205 1.0236 -4.8482 43 1 3.3593 -0.2040 -6.8153 44 1 5.1534 -1.3124 -7.9445 45 1 5.9677 -1.9362 -6.4730 46 1 7.0200 -3.2517 -8.1962 47 1 5.5045 -3.3750 -9.1460 48 1 6.3479 -4.9090 -6.6857 49 1 5.2544 -5.4101 -8.0108 50 1 4.5469 -4.2472 -5.4369 51 1 3.4534 -4.7829 -6.7441 52 1 2.8778 -2.6081 -2.5804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734258477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:07 Heat of formation + Delta-G solvation = -5.330619 kcal Electronic energy + Delta-G solvation = -29762.657131 eV Core-core repulsion = 25761.297861 eV Total energy + Delta-G solvation = -4001.359271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.08971 -40.83086 -39.12809 -37.99727 -36.64878 -34.41687 -34.02399 -33.65324 -32.78776 -31.32044 -30.01009 -29.87984 -27.38020 -25.45866 -24.82798 -24.38827 -22.91986 -22.47505 -21.96336 -21.56557 -21.50905 -19.63719 -19.20183 -18.46762 -17.91117 -17.13959 -16.67747 -16.61686 -16.21321 -16.05244 -15.85401 -15.73724 -15.56076 -15.21440 -14.94576 -14.74041 -14.57653 -14.37858 -14.07845 -13.96656 -13.66504 -13.57333 -13.50277 -13.30297 -13.14688 -13.04893 -12.86127 -12.50817 -12.30220 -12.15473 -12.10425 -12.04760 -11.88980 -11.77680 -11.54541 -11.49929 -11.32248 -11.10543 -10.98881 -10.94336 -10.51199 -10.15258 -9.31427 -9.30727 -8.05346 -5.38476 -0.48281 0.16412 1.34707 1.38006 1.45176 1.71903 2.10424 2.45297 2.45503 2.76970 3.19446 3.26216 3.48575 3.57873 3.65872 3.72193 3.82149 3.87632 3.96483 3.99153 4.10100 4.13450 4.17236 4.28731 4.39535 4.48897 4.54361 4.55863 4.62978 4.64563 4.75754 4.82256 4.85477 4.86355 4.90160 4.94259 4.94765 4.99686 5.04294 5.11301 5.13879 5.21960 5.29798 5.31983 5.34536 5.42265 5.52422 5.55162 5.73948 5.96570 6.19552 6.46452 6.72645 7.05917 7.13858 7.83398 8.01067 9.16336 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.002672 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.881942 B =10477.354289 C =13211.557644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.118 4.118 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.955 3.045 13 H -0.279 1.279 14 H -0.293 1.293 15 H -0.254 1.254 16 N -0.708 5.708 17 C 0.568 3.432 18 O -0.577 6.577 19 C -0.227 4.227 20 C -0.003 4.003 21 C -0.183 4.183 22 C 0.317 3.683 23 N -0.468 5.468 24 C 0.040 3.960 25 C -0.118 4.118 26 C -0.132 4.132 27 C 0.031 3.969 28 N -0.538 5.538 29 C 0.164 3.836 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.029 0.971 39 H 0.364 0.636 40 H 0.258 0.742 41 H 0.410 0.590 42 H 0.152 0.848 43 H 0.165 0.835 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 -0.060 -29.400 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.156 4.156 6 C 0.025 3.975 7 N -0.409 5.409 8 C -0.367 4.367 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.205 1.205 14 H -0.220 1.220 15 H -0.179 1.179 16 N -0.360 5.360 17 C 0.356 3.644 18 O -0.458 6.458 19 C -0.233 4.233 20 C -0.029 4.029 21 C -0.206 4.206 22 C 0.084 3.916 23 N -0.185 5.185 24 C -0.085 4.085 25 C -0.156 4.156 26 C -0.170 4.170 27 C -0.096 4.096 28 N -0.252 5.252 29 C 0.005 3.995 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.197 0.803 40 H 0.067 0.933 41 H 0.247 0.753 42 H 0.169 0.831 43 H 0.182 0.818 44 H 0.126 0.874 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.361 -0.234 -29.620 32.918 hybrid contribution 1.208 0.765 0.462 1.503 sum -13.153 0.532 -29.158 31.991 Atomic orbital electron populations 1.22108 0.93853 1.03031 1.02409 1.21020 0.94770 0.96749 0.83423 0.91113 1.21769 0.93627 1.02392 0.97213 1.21667 0.96654 1.00199 0.97103 1.20861 0.81993 0.97930 0.96669 1.42810 1.03843 1.66694 1.27519 1.19081 0.90201 1.26329 1.01054 0.92405 1.25519 0.97314 1.02254 1.00562 1.69881 1.07529 1.51593 1.34428 0.85405 0.77897 0.78395 0.80058 1.20525 1.21981 1.17922 1.45989 1.66358 1.14551 1.09109 1.18107 0.76898 0.85967 0.83460 1.90755 1.52437 1.16981 1.85604 1.20837 1.10496 0.96343 0.95659 1.21452 0.90152 1.00932 0.90363 1.21470 1.04391 0.93486 1.01208 1.20468 0.92471 0.90740 0.87883 1.61803 1.27421 1.04529 1.24751 1.23484 0.86141 0.99872 0.98991 1.22538 1.01604 0.92313 0.99187 1.22462 0.96696 0.99017 0.98816 1.22931 0.99278 0.86707 1.00641 1.67685 1.18355 1.40010 0.99120 1.23082 0.89314 0.90326 0.96744 0.90997 0.90172 0.93768 0.88858 0.89318 0.91900 0.92625 0.95720 0.95278 0.80326 0.93279 0.75253 0.83057 0.81774 0.87373 0.93340 0.89035 0.89389 0.90987 0.89488 0.91311 0.90220 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.78 2.57 44.99 0.12 2.90 16 3 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.09 4.75 30.59 0.15 -1.95 16 5 C -0.12 -3.16 5.22 30.59 0.16 -3.00 16 6 C 0.15 5.49 6.26 86.38 0.54 6.03 16 7 N -0.76 -36.04 5.41 -343.45 -1.86 -37.90 16 8 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 9 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 10 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 11 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 12 Si 0.96 46.24 27.74 68.60 1.90 48.14 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 14 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 15 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 16 N -0.71 -13.38 4.48 -445.71 -2.00 -15.38 16 17 C 0.57 13.40 7.73 86.69 0.67 14.07 16 18 O -0.58 -17.58 16.07 -4.01 -0.06 -17.64 16 19 C -0.23 -4.70 5.89 -19.99 -0.12 -4.82 16 20 C 0.00 -0.05 9.65 22.46 0.22 0.16 16 21 C -0.18 -3.05 9.38 22.22 0.21 -2.84 16 22 C 0.32 6.05 6.20 133.25 0.83 6.88 16 23 N -0.47 -7.57 5.28 -689.51 -3.64 -11.21 16 24 C 0.04 0.46 6.03 86.65 0.52 0.99 16 25 C -0.12 -1.02 7.06 31.80 0.22 -0.79 16 26 C -0.13 -1.41 6.93 31.46 0.22 -1.19 16 27 C 0.03 0.49 6.34 86.43 0.55 1.04 16 28 N -0.54 -11.27 8.10 -192.32 -1.56 -12.82 16 29 C 0.16 3.12 10.71 85.03 0.91 4.03 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.65 7.75 -2.39 -0.02 1.64 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.36 16.53 5.53 -92.70 -0.51 16.02 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.41 5.89 6.65 -92.71 -0.62 5.27 16 42 H 0.15 2.72 7.73 -2.91 -0.02 2.70 16 43 H 0.16 1.87 8.02 -2.91 -0.02 1.85 16 44 H 0.11 0.90 8.11 -2.38 -0.02 0.88 16 45 H 0.05 0.67 7.99 -2.39 -0.02 0.66 16 46 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 1.32 6.48 -2.39 -0.02 1.31 16 51 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.18 2.45 6.41 -2.91 -0.02 2.43 16 Total: -1.00 -77.02 416.43 0.04 -76.98 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.27 Total: 29.84 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 7.22 Total: 3.43 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -8.75 Total: -140.74 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.06 Total: -17.64 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -77.02 0.04 -76.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734258477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.651 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds