Wall clock time and date at job start Wed Apr 1 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47307 * 2 1 4 4 N 1.46495 * 109.47768 * 120.00036 * 2 1 3 5 5 C 1.36942 * 120.00003 * 275.00587 * 4 2 1 6 6 H 1.07996 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00052 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99736 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47324 * 59.99372 * 9 7 5 11 11 H 1.48495 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46713 * 299.99310 * 9 7 5 13 13 C 1.53004 * 109.47255 * 240.00066 * 2 1 3 14 14 H 1.09003 * 109.70090 * 52.87146 * 13 2 1 15 15 C 1.53191 * 109.58454 * 292.52130 * 13 2 1 16 16 C 1.53041 * 109.31107 * 185.57365 * 15 13 2 17 17 C 1.53043 * 109.53879 * 61.36380 * 16 15 13 18 18 C 1.53626 * 109.24165 * 298.51242 * 17 16 15 19 19 N 1.46918 * 109.58739 * 173.22848 * 13 2 1 20 20 C 1.34775 * 120.63683 * 353.37498 * 19 13 2 21 21 O 1.21577 * 119.99651 * 7.77096 * 20 19 13 22 22 C 1.47712 * 120.00603 * 187.77515 * 20 19 13 23 23 C 1.41502 * 126.51678 * 186.70974 * 22 20 19 24 24 C 1.35363 * 105.49962 * 179.69960 * 23 22 20 25 25 C 1.50703 * 126.38793 * 180.28492 * 24 23 22 26 26 C 1.53001 * 117.49715 * 33.71894 * 25 24 23 27 27 C 1.53003 * 117.49317 * 325.06263 * 25 24 23 28 28 N 1.35041 * 107.23014 * 0.25987 * 24 23 22 29 29 C 1.46499 * 124.88310 * 179.97438 * 28 24 23 30 30 N 1.28467 * 110.22774 * 0.02562 * 28 24 23 31 31 H 1.09002 * 109.47002 * 176.86960 * 1 2 3 32 32 H 1.09004 * 109.47273 * 296.86343 * 1 2 3 33 33 H 1.08996 * 109.47543 * 56.86461 * 1 2 3 34 34 H 0.96998 * 120.00137 * 94.99185 * 4 2 1 35 35 H 0.97008 * 120.00078 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.49583 * 305.52339 * 15 13 2 37 37 H 1.08996 * 109.49786 * 65.59472 * 15 13 2 38 38 H 1.08996 * 109.46182 * 181.38660 * 16 15 13 39 39 H 1.09004 * 109.46295 * 301.34667 * 16 15 13 40 40 H 1.09008 * 109.49472 * 58.58302 * 17 16 15 41 41 H 1.08997 * 109.50323 * 178.64880 * 17 16 15 42 42 H 1.08997 * 109.73703 * 295.11590 * 18 17 16 43 43 H 1.09001 * 109.66510 * 174.54636 * 18 17 16 44 44 H 1.07991 * 127.25235 * 359.96337 * 23 22 20 45 45 H 1.09002 * 115.55250 * 179.39082 * 25 24 23 46 46 H 1.09007 * 117.49841 * 0.02562 * 26 25 24 47 47 H 1.08995 * 117.50253 * 145.02497 * 26 25 24 48 48 H 1.09004 * 117.49463 * 214.97687 * 27 25 24 49 49 H 1.08997 * 117.50307 * 359.97438 * 27 25 24 50 50 H 1.09003 * 109.46875 * 90.00079 * 29 28 24 51 51 H 1.08998 * 109.46734 * 209.99793 * 29 28 24 52 52 H 1.08996 * 109.47159 * 330.00130 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6115 -0.6619 3.5092 8 7 2.9237 -1.9392 3.4502 9 14 2.7892 0.2698 5.1185 10 1 1.4667 0.8064 5.5284 11 1 3.2972 -0.6489 6.1687 12 1 3.7445 1.3922 4.9376 13 6 2.0400 -0.7212 -1.2493 14 1 1.5785 -0.2891 -2.1372 15 6 1.6900 -2.2101 -1.1615 16 6 2.3220 -2.9490 -2.3433 17 6 3.8444 -2.8063 -2.2812 18 6 4.2182 -1.3198 -2.3851 19 7 3.5001 -0.5830 -1.3362 20 6 4.1675 0.2090 -0.4738 21 8 3.5852 0.7051 0.4712 22 6 5.6064 0.4744 -0.6767 23 6 6.4671 1.1688 0.2060 24 6 7.6822 1.1581 -0.3906 25 6 8.9498 1.7663 0.1517 26 6 9.1490 1.7490 1.6686 27 6 8.8241 3.0631 0.9539 28 7 7.5468 0.5003 -1.5622 29 6 8.6294 0.2642 -2.5205 30 7 6.3318 0.1122 -1.7158 31 1 -0.3633 -1.0262 -0.0561 32 1 -0.3634 0.4644 0.9168 33 1 -0.3634 0.5617 -0.8605 34 1 2.2490 -1.6317 1.1525 35 1 3.2465 -2.3967 4.2424 36 1 2.0754 -2.6199 -0.2280 37 1 0.6073 -2.3317 -1.1928 38 1 2.0540 -4.0045 -2.2969 39 1 1.9550 -2.5222 -3.2768 40 1 4.2095 -3.2106 -1.3370 41 1 4.2953 -3.3528 -3.1096 42 1 3.9307 -0.9355 -3.3638 43 1 5.2926 -1.2010 -2.2448 44 1 6.2100 1.6103 1.1574 45 1 9.8345 1.6449 -0.4734 46 1 8.3632 1.2973 2.2743 47 1 10.1646 1.6167 2.0415 48 1 9.6263 3.7947 0.8568 49 1 7.8247 3.4765 1.0891 50 1 9.1219 -0.6797 -2.2869 51 1 8.2185 0.2198 -3.5290 52 1 9.3532 1.0768 -2.4584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752147936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:11 Heat of formation + Delta-G solvation = 136.721591 kcal Electronic energy + Delta-G solvation = -32878.756251 eV Core-core repulsion = 28883.556826 eV Total energy + Delta-G solvation = -3995.199425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -42.51907 -39.76462 -37.30871 -36.61868 -35.09800 -33.29083 -32.22196 -31.98166 -30.21930 -29.40378 -27.90565 -27.44339 -24.93713 -23.80161 -23.62647 -22.93246 -22.49740 -22.08800 -20.50456 -19.86257 -19.68098 -18.15430 -17.12063 -16.75527 -16.18944 -16.03415 -15.25223 -15.09202 -14.61893 -14.37728 -14.24406 -14.00516 -13.82636 -13.69293 -13.38548 -13.21777 -12.97868 -12.75803 -12.58510 -12.46783 -12.08138 -11.98167 -11.78178 -11.72519 -11.66940 -11.27600 -11.15927 -11.04695 -10.93407 -10.66153 -10.57741 -10.51046 -10.39851 -10.35965 -9.97741 -9.79475 -9.58424 -9.23584 -8.81620 -8.55490 -8.50062 -8.24233 -7.71761 -6.44097 -5.37942 -2.58806 1.87054 2.39465 2.54231 3.62037 3.65078 3.68132 3.70424 3.81836 4.19482 4.27746 4.45793 4.71561 4.81488 4.84873 4.91260 4.93036 5.00433 5.16115 5.18660 5.27098 5.32907 5.47238 5.51665 5.53252 5.65082 5.74934 5.79900 5.86074 5.88023 5.96056 5.98310 6.00179 6.03061 6.15857 6.17461 6.26276 6.29382 6.34641 6.43004 6.47416 6.58153 6.62573 6.74189 6.74506 6.94416 7.09312 7.15692 7.23725 7.56490 8.08536 8.10213 8.26693 8.80639 9.16280 9.92131 10.50177 10.86660 11.86867 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008149 B = 0.005255 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.013158 B = 5326.508110 C = 7866.028423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 H 0.078 0.922 4 N -0.700 5.700 5 C -0.170 4.170 6 H 0.063 0.937 7 C -0.031 4.031 8 N -0.949 5.949 9 Si 0.896 3.104 10 H -0.293 1.293 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.148 3.852 14 H 0.061 0.939 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.095 3.905 19 N -0.600 5.600 20 C 0.572 3.428 21 O -0.438 6.438 22 C 0.013 3.987 23 C -0.172 4.172 24 C 0.040 3.960 25 C -0.096 4.096 26 C -0.162 4.162 27 C -0.163 4.163 28 N -0.292 5.292 29 C 0.089 3.911 30 N -0.273 5.273 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.378 0.622 35 H 0.246 0.754 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.119 0.881 44 H 0.159 0.841 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.560 3.959 -16.197 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 H 0.096 0.904 4 N -0.342 5.342 5 C -0.302 4.302 6 H 0.081 0.919 7 C -0.224 4.224 8 N -0.602 5.602 9 Si 0.730 3.270 10 H -0.220 1.220 11 H -0.224 1.224 12 H -0.219 1.219 13 C 0.044 3.956 14 H 0.079 0.921 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.029 4.029 19 N -0.336 5.336 20 C 0.356 3.644 21 O -0.304 6.304 22 C -0.147 4.147 23 C -0.200 4.200 24 C -0.084 4.084 25 C -0.115 4.115 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.079 5.079 29 C -0.052 4.052 30 N -0.107 5.107 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.214 0.786 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.176 0.824 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.121 0.879 50 H 0.099 0.901 51 H 0.112 0.888 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.277 3.812 -16.619 21.011 hybrid contribution 0.444 0.259 1.496 1.582 sum 12.721 4.072 -15.123 20.177 Atomic orbital electron populations 1.22587 1.00178 1.00303 0.99985 1.20666 0.90192 0.97599 0.85537 0.90418 1.42411 1.77093 1.09645 1.05044 1.19033 1.31791 0.93067 0.86313 0.91866 1.24529 1.04392 0.95996 0.97496 1.69633 1.53948 1.08562 1.28047 0.86375 0.77449 0.78511 0.84664 1.22021 1.22381 1.21913 1.21565 0.79061 0.95778 0.99176 0.92121 1.21988 1.00433 0.95447 0.99261 1.21507 0.95403 1.00005 0.98465 1.21989 0.96432 0.96802 1.02005 1.22304 1.00057 0.90452 0.90119 1.47610 1.06835 1.46611 1.32554 1.17086 0.83323 0.81437 0.82597 1.91145 1.64758 1.48674 1.25862 1.22382 0.96050 1.03191 0.93083 1.21436 0.90633 1.05649 1.02267 1.20341 0.96209 1.02549 0.89306 1.20232 0.94060 1.02307 0.94943 1.23127 1.03490 1.00799 0.92597 1.23099 1.03864 0.90438 1.02684 1.45300 1.07292 1.39961 1.15370 1.22043 0.87486 1.03152 0.92533 1.73394 0.90988 1.21253 1.25108 0.93764 0.92604 0.94953 0.78613 0.94381 0.90113 0.91226 0.92405 0.92599 0.91517 0.91910 0.92955 0.86353 0.82360 0.87027 0.87646 0.88192 0.88261 0.87873 0.90112 0.88795 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.35 37.15 0.35 -2.94 16 2 C 0.17 3.68 1.88 -67.93 -0.13 3.55 16 3 H 0.08 1.85 5.93 -52.07 -0.31 1.54 16 4 N -0.70 -18.34 3.63 -53.43 -0.19 -18.54 16 5 C -0.17 -4.99 7.95 -15.06 -0.12 -5.11 16 6 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.03 -0.96 5.50 -17.43 -0.10 -1.06 16 8 N -0.95 -30.38 13.06 55.49 0.72 -29.66 16 9 Si 0.90 24.23 29.55 -169.99 -5.02 19.20 16 10 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 11 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 12 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 13 C 0.15 2.69 2.71 -67.60 -0.18 2.51 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.13 -2.27 4.88 -26.61 -0.13 -2.40 16 16 C -0.12 -1.62 5.88 -26.69 -0.16 -1.78 16 17 C -0.13 -1.91 6.10 -26.38 -0.16 -2.07 16 18 C 0.09 1.44 6.12 -3.48 -0.02 1.42 16 19 N -0.60 -11.11 2.96 -166.11 -0.49 -11.60 16 20 C 0.57 12.17 7.41 -12.39 -0.09 12.08 16 21 O -0.44 -10.89 9.62 5.30 0.05 -10.84 16 22 C 0.01 0.25 6.82 -82.77 -0.56 -0.32 16 23 C -0.17 -3.02 9.86 -39.36 -0.39 -3.40 16 24 C 0.04 0.55 6.60 -82.20 -0.54 0.01 16 25 C -0.10 -0.97 5.93 -91.77 -0.54 -1.51 16 26 C -0.16 -1.64 10.05 -26.69 -0.27 -1.91 16 27 C -0.16 -1.54 10.06 -26.69 -0.27 -1.81 16 28 N -0.29 -3.79 3.70 -63.85 -0.24 -4.03 16 29 C 0.09 0.65 11.05 59.85 0.66 1.31 16 30 N -0.27 -4.31 8.48 33.42 0.28 -4.03 16 31 H 0.04 0.83 6.65 -51.93 -0.35 0.48 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.38 10.58 5.56 -40.82 -0.23 10.36 16 35 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.08 1.68 6.00 -51.93 -0.31 1.37 16 37 H 0.07 1.12 6.86 -51.93 -0.36 0.76 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 1.86 4.21 -66.09 -0.28 1.58 16 44 H 0.16 2.90 8.06 -52.49 -0.42 2.48 16 45 H 0.11 0.83 7.18 -51.93 -0.37 0.46 16 46 H 0.11 1.29 7.94 -51.93 -0.41 0.88 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.11 7.97 -51.93 -0.41 0.70 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.44 7.13 -51.93 -0.37 0.07 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -35.64 397.82 -9.99 -45.63 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.44 Total: 11.30 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.65 Total: -3.44 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: 0.09 Total: -67.84 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.05 Total: -10.84 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.02 Total: 19.20 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.64 -9.99 -45.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.351 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds