Wall clock time and date at job start Wed Apr 1 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47307 * 2 1 4 4 N 1.46495 * 109.47768 * 120.00036 * 2 1 3 5 5 C 1.36942 * 120.00003 * 275.00587 * 4 2 1 6 6 H 1.07996 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00052 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99736 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47324 * 59.99372 * 9 7 5 11 11 H 1.48495 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46713 * 299.99310 * 9 7 5 13 13 C 1.53004 * 109.47255 * 240.00066 * 2 1 3 14 14 H 1.09003 * 109.70090 * 52.87146 * 13 2 1 15 15 C 1.53191 * 109.58454 * 292.52130 * 13 2 1 16 16 C 1.53041 * 109.31107 * 185.57365 * 15 13 2 17 17 C 1.53043 * 109.53879 * 61.36380 * 16 15 13 18 18 C 1.53626 * 109.24165 * 298.51242 * 17 16 15 19 19 N 1.46918 * 109.58739 * 173.22848 * 13 2 1 20 20 C 1.34775 * 120.63683 * 353.37498 * 19 13 2 21 21 O 1.21577 * 119.99651 * 7.77096 * 20 19 13 22 22 C 1.47712 * 120.00603 * 187.77515 * 20 19 13 23 23 C 1.41502 * 126.51678 * 186.70974 * 22 20 19 24 24 C 1.35363 * 105.49962 * 179.69960 * 23 22 20 25 25 C 1.50703 * 126.38793 * 180.28492 * 24 23 22 26 26 C 1.53001 * 117.49715 * 33.71894 * 25 24 23 27 27 C 1.53003 * 117.49317 * 325.06263 * 25 24 23 28 28 N 1.35041 * 107.23014 * 0.25987 * 24 23 22 29 29 C 1.46499 * 124.88310 * 179.97438 * 28 24 23 30 30 N 1.28467 * 110.22774 * 0.02562 * 28 24 23 31 31 H 1.09002 * 109.47002 * 176.86960 * 1 2 3 32 32 H 1.09004 * 109.47273 * 296.86343 * 1 2 3 33 33 H 1.08996 * 109.47543 * 56.86461 * 1 2 3 34 34 H 0.96998 * 120.00137 * 94.99185 * 4 2 1 35 35 H 0.97008 * 120.00078 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.49583 * 305.52339 * 15 13 2 37 37 H 1.08996 * 109.49786 * 65.59472 * 15 13 2 38 38 H 1.08996 * 109.46182 * 181.38660 * 16 15 13 39 39 H 1.09004 * 109.46295 * 301.34667 * 16 15 13 40 40 H 1.09008 * 109.49472 * 58.58302 * 17 16 15 41 41 H 1.08997 * 109.50323 * 178.64880 * 17 16 15 42 42 H 1.08997 * 109.73703 * 295.11590 * 18 17 16 43 43 H 1.09001 * 109.66510 * 174.54636 * 18 17 16 44 44 H 1.07991 * 127.25235 * 359.96337 * 23 22 20 45 45 H 1.09002 * 115.55250 * 179.39082 * 25 24 23 46 46 H 1.09007 * 117.49841 * 0.02562 * 26 25 24 47 47 H 1.08995 * 117.50253 * 145.02497 * 26 25 24 48 48 H 1.09004 * 117.49463 * 214.97687 * 27 25 24 49 49 H 1.08997 * 117.50307 * 359.97438 * 27 25 24 50 50 H 1.09003 * 109.46875 * 90.00079 * 29 28 24 51 51 H 1.08998 * 109.46734 * 209.99793 * 29 28 24 52 52 H 1.08996 * 109.47159 * 330.00130 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6115 -0.6619 3.5092 8 7 2.9237 -1.9392 3.4502 9 14 2.7892 0.2698 5.1185 10 1 1.4667 0.8064 5.5284 11 1 3.2972 -0.6489 6.1687 12 1 3.7445 1.3922 4.9376 13 6 2.0400 -0.7212 -1.2493 14 1 1.5785 -0.2891 -2.1372 15 6 1.6900 -2.2101 -1.1615 16 6 2.3220 -2.9490 -2.3433 17 6 3.8444 -2.8063 -2.2812 18 6 4.2182 -1.3198 -2.3851 19 7 3.5001 -0.5830 -1.3362 20 6 4.1675 0.2090 -0.4738 21 8 3.5852 0.7051 0.4712 22 6 5.6064 0.4744 -0.6767 23 6 6.4671 1.1688 0.2060 24 6 7.6822 1.1581 -0.3906 25 6 8.9498 1.7663 0.1517 26 6 9.1490 1.7490 1.6686 27 6 8.8241 3.0631 0.9539 28 7 7.5468 0.5003 -1.5622 29 6 8.6294 0.2642 -2.5205 30 7 6.3318 0.1122 -1.7158 31 1 -0.3633 -1.0262 -0.0561 32 1 -0.3634 0.4644 0.9168 33 1 -0.3634 0.5617 -0.8605 34 1 2.2490 -1.6317 1.1525 35 1 3.2465 -2.3967 4.2424 36 1 2.0754 -2.6199 -0.2280 37 1 0.6073 -2.3317 -1.1928 38 1 2.0540 -4.0045 -2.2969 39 1 1.9550 -2.5222 -3.2768 40 1 4.2095 -3.2106 -1.3370 41 1 4.2953 -3.3528 -3.1096 42 1 3.9307 -0.9355 -3.3638 43 1 5.2926 -1.2010 -2.2448 44 1 6.2100 1.6103 1.1574 45 1 9.8345 1.6449 -0.4734 46 1 8.3632 1.2973 2.2743 47 1 10.1646 1.6167 2.0415 48 1 9.6263 3.7947 0.8568 49 1 7.8247 3.4765 1.0891 50 1 9.1219 -0.6797 -2.2869 51 1 8.2185 0.2198 -3.5290 52 1 9.3532 1.0768 -2.4584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752147936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:07 Heat of formation + Delta-G solvation = 114.057499 kcal Electronic energy + Delta-G solvation = -32879.739040 eV Core-core repulsion = 28883.556826 eV Total energy + Delta-G solvation = -3996.182214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -43.69856 -41.27910 -38.18291 -38.10259 -36.84473 -34.52369 -33.93884 -33.54060 -31.48765 -31.08155 -29.67360 -28.46515 -26.29094 -25.68919 -24.93052 -24.29260 -23.39134 -23.27723 -21.79455 -21.36450 -20.89609 -19.50621 -19.02980 -18.13546 -17.37357 -17.24853 -16.81080 -16.35535 -16.06274 -15.87113 -15.66618 -15.45164 -15.29780 -14.94836 -14.78273 -14.65652 -14.37976 -14.01911 -13.86643 -13.63178 -13.46214 -13.36359 -13.23896 -13.00785 -12.80602 -12.76138 -12.62099 -12.45490 -12.40368 -12.27980 -12.14861 -12.01283 -11.77693 -11.69606 -11.46172 -11.40151 -11.27296 -10.91127 -10.78783 -9.99167 -9.87297 -9.68549 -9.27915 -8.58269 -7.73608 -4.91629 0.64676 1.07018 1.41525 1.46164 1.51269 1.58302 2.22559 2.65863 2.68283 3.01140 3.27630 3.52095 3.59586 3.73948 3.91779 3.98465 4.01432 4.04512 4.07001 4.12299 4.23770 4.31465 4.38400 4.41239 4.45260 4.46114 4.59271 4.65937 4.67435 4.75499 4.77942 4.79095 4.89158 4.95184 4.99457 5.00935 5.05473 5.09355 5.15940 5.19459 5.23851 5.25210 5.29692 5.38798 5.47406 5.57979 5.61265 5.68546 5.89422 6.06887 6.49205 6.67352 6.96288 7.52877 7.62545 8.34717 8.59112 9.51867 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008149 B = 0.005255 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.013158 B = 5326.508110 C = 7866.028423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.053 0.947 4 N -0.702 5.702 5 C -0.152 4.152 6 H 0.052 0.948 7 C -0.097 4.097 8 N -0.984 5.984 9 Si 0.954 3.046 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.293 1.293 13 C 0.149 3.851 14 H 0.094 0.906 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.092 3.908 19 N -0.599 5.599 20 C 0.562 3.438 21 O -0.496 6.496 22 C -0.026 4.026 23 C -0.213 4.213 24 C 0.057 3.943 25 C -0.094 4.094 26 C -0.170 4.170 27 C -0.157 4.157 28 N -0.279 5.279 29 C 0.072 3.928 30 N -0.262 5.262 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.367 0.633 35 H 0.239 0.761 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.156 0.844 46 H 0.070 0.930 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.078 0.922 50 H 0.099 0.901 51 H 0.109 0.891 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.619 4.117 -19.853 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.343 5.343 5 C -0.286 4.286 6 H 0.070 0.930 7 C -0.286 4.286 8 N -0.640 5.640 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.221 1.221 13 C 0.046 3.954 14 H 0.111 0.889 15 C -0.165 4.165 16 C -0.146 4.146 17 C -0.168 4.168 18 C -0.031 4.031 19 N -0.334 5.334 20 C 0.347 3.653 21 O -0.367 6.367 22 C -0.184 4.184 23 C -0.241 4.241 24 C -0.068 4.068 25 C -0.114 4.114 26 C -0.207 4.207 27 C -0.194 4.194 28 N -0.066 5.066 29 C -0.066 4.066 30 N -0.098 5.098 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.173 0.827 46 H 0.088 0.912 47 H 0.147 0.853 48 H 0.151 0.849 49 H 0.097 0.903 50 H 0.118 0.882 51 H 0.128 0.872 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.315 3.976 -20.359 25.204 hybrid contribution -0.102 0.272 2.465 2.482 sum 14.214 4.248 -17.894 23.244 Atomic orbital electron populations 1.22406 0.98011 1.01090 1.00406 1.20762 0.91476 0.96424 0.85672 0.92952 1.42488 1.77038 1.09050 1.05685 1.19186 1.29374 0.92457 0.87559 0.93004 1.25168 1.05956 0.96960 1.00551 1.69796 1.56108 1.09855 1.28205 0.85432 0.77540 0.77176 0.81196 1.20957 1.22508 1.22078 1.21578 0.79248 0.96361 0.98256 0.88872 1.21909 1.01260 0.94629 0.98737 1.21487 0.94682 1.00532 0.97902 1.21970 0.97016 0.96132 1.01637 1.22521 0.99679 0.90817 0.90057 1.47766 1.07115 1.45950 1.32573 1.17558 0.84456 0.81023 0.82275 1.91088 1.66277 1.51134 1.28243 1.22099 0.95514 1.05794 0.94984 1.21366 0.92836 1.07750 1.02169 1.20696 0.96239 1.00989 0.88886 1.20519 0.93471 1.02178 0.95195 1.23137 1.03915 1.01299 0.92377 1.23154 1.03755 0.90704 1.01801 1.45874 1.07407 1.37677 1.15635 1.22646 0.86439 1.05567 0.91902 1.73302 0.92019 1.20794 1.23712 0.93076 0.95060 0.91234 0.79860 0.95253 0.94699 0.89997 0.91073 0.89625 0.94967 0.88290 0.90200 0.86780 0.85239 0.82689 0.91161 0.85274 0.84889 0.90323 0.88212 0.87212 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 9.35 71.98 0.67 -5.49 16 2 C 0.17 7.41 1.88 44.99 0.08 7.50 16 3 H 0.05 2.65 5.93 -4.68 -0.03 2.62 16 4 N -0.70 -39.03 3.63 -322.95 -1.17 -40.20 16 5 C -0.15 -9.51 7.95 84.03 0.67 -8.84 16 6 H 0.05 3.29 7.83 -2.91 -0.02 3.26 16 7 C -0.10 -6.26 5.50 84.86 0.47 -5.79 16 8 N -0.98 -66.43 13.06 21.65 0.28 -66.14 16 9 Si 0.95 52.51 29.55 68.60 2.03 54.53 16 10 H -0.28 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.30 -16.35 7.11 99.48 0.71 -15.64 16 12 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 13 C 0.15 5.37 2.71 44.98 0.12 5.50 16 14 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 15 C -0.13 -4.26 4.88 30.67 0.15 -4.11 16 16 C -0.11 -2.73 5.88 30.62 0.18 -2.55 16 17 C -0.13 -3.44 6.10 30.82 0.19 -3.25 16 18 C 0.09 2.66 6.12 86.51 0.53 3.19 16 19 N -0.60 -22.53 2.96 -797.70 -2.36 -24.89 16 20 C 0.56 25.43 7.41 86.75 0.64 26.07 16 21 O -0.50 -26.82 9.62 -3.96 -0.04 -26.85 16 22 C -0.03 -1.02 6.82 42.46 0.29 -0.73 16 23 C -0.21 -8.06 9.86 22.41 0.22 -7.83 16 24 C 0.06 1.56 6.60 41.40 0.27 1.83 16 25 C -0.09 -1.69 5.93 -11.54 -0.07 -1.76 16 26 C -0.17 -3.30 10.05 30.62 0.31 -2.99 16 27 C -0.16 -2.76 10.06 30.62 0.31 -2.45 16 28 N -0.28 -6.70 3.70 -355.92 -1.32 -8.02 16 29 C 0.07 0.75 11.05 127.77 1.41 2.16 16 30 N -0.26 -8.15 8.48 -48.18 -0.41 -8.56 16 31 H 0.05 1.89 6.65 -2.39 -0.02 1.87 16 32 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.37 21.92 5.56 -92.71 -0.52 21.40 16 35 H 0.24 15.82 8.31 -92.70 -0.77 15.05 16 36 H 0.03 1.50 6.00 -2.39 -0.01 1.49 16 37 H 0.08 2.51 6.86 -2.39 -0.02 2.50 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 3.46 4.21 -20.70 -0.09 3.38 16 44 H 0.13 5.47 8.06 -2.92 -0.02 5.45 16 45 H 0.16 1.47 7.18 -2.39 -0.02 1.45 16 46 H 0.07 1.88 7.94 -2.38 -0.02 1.86 16 47 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.08 1.79 7.97 -2.39 -0.02 1.77 16 50 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.12 0.51 7.13 -2.39 -0.02 0.49 16 Total: -1.00 -86.79 397.82 3.78 -83.02 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.32 Total: 36.67 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.45 Total: 0.45 kcal Atomic # 7 Polarization: -142.83 SS G_CDS: -4.98 Total: -147.81 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.04 Total: -26.85 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.03 Total: 54.53 kcal Total: -86.79 3.78 -83.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.073 kcal (2) G-P(sol) polarization free energy of solvation -86.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds