Wall clock time and date at job start Wed Apr 1 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 N 1.46497 * 109.47058 * 240.00564 * 2 1 3 5 5 C 1.36936 * 120.00262 * 70.13805 * 4 2 1 6 6 H 1.07994 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99769 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99496 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47157 * 90.00221 * 9 7 5 11 11 H 1.48503 * 109.46921 * 209.99804 * 9 7 5 12 12 H 1.48502 * 109.47574 * 330.00069 * 9 7 5 13 13 C 1.53001 * 109.47256 * 119.99961 * 2 1 3 14 14 H 1.09000 * 109.69579 * 67.93515 * 13 2 1 15 15 C 1.52755 * 109.50934 * 307.81597 * 13 2 1 16 16 C 1.53047 * 109.37954 * 185.70461 * 15 13 2 17 17 C 1.53033 * 109.53896 * 61.24299 * 16 15 13 18 18 C 1.53195 * 109.31286 * 298.63396 * 17 16 15 19 19 N 1.46922 * 109.58446 * 188.28651 * 13 2 1 20 20 C 1.34780 * 120.63297 * 353.42343 * 19 13 2 21 21 O 1.21569 * 119.99884 * 6.48893 * 20 19 13 22 22 C 1.47710 * 119.99904 * 186.49064 * 20 19 13 23 23 C 1.41509 * 126.51770 * 186.97001 * 22 20 19 24 24 C 1.35365 * 105.50303 * 179.75642 * 23 22 20 25 25 C 1.50695 * 126.38581 * 180.25779 * 24 23 22 26 26 C 1.53005 * 117.49788 * 33.72503 * 25 24 23 27 27 C 1.52996 * 117.49952 * 325.06795 * 25 24 23 28 28 N 1.35035 * 107.22783 * 0.24184 * 24 23 22 29 29 C 1.46505 * 124.88386 * 179.97438 * 28 24 23 30 30 N 1.28462 * 110.23480 * 359.97438 * 28 24 23 31 31 H 1.09002 * 109.46917 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47099 * 299.99916 * 1 2 3 33 33 H 1.08998 * 109.47166 * 59.99403 * 1 2 3 34 34 H 0.96997 * 119.99844 * 250.14400 * 4 2 1 35 35 H 0.96994 * 119.99966 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.56314 * 65.67524 * 15 13 2 37 37 H 1.08991 * 109.36441 * 305.61590 * 15 13 2 38 38 H 1.08998 * 109.46034 * 301.21779 * 16 15 13 39 39 H 1.08998 * 109.44533 * 181.25841 * 16 15 13 40 40 H 1.08994 * 109.50185 * 178.68168 * 17 16 15 41 41 H 1.09001 * 109.52705 * 58.60144 * 17 16 15 42 42 H 1.09000 * 109.58676 * 294.84918 * 18 17 16 43 43 H 1.08999 * 109.58811 * 174.42442 * 18 17 16 44 44 H 1.07994 * 127.24650 * 0.02562 * 23 22 20 45 45 H 1.08998 * 115.55256 * 179.39154 * 25 24 23 46 46 H 1.09003 * 117.49995 * 359.97438 * 26 25 24 47 47 H 1.09001 * 117.49743 * 145.01858 * 26 25 24 48 48 H 1.09006 * 117.50267 * 214.97998 * 27 25 24 49 49 H 1.09010 * 117.49954 * 359.97213 * 27 25 24 50 50 H 1.08997 * 109.47175 * 89.99588 * 29 28 24 51 51 H 1.08992 * 109.47238 * 209.99766 * 29 28 24 52 52 H 1.09002 * 109.46899 * 329.99991 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.8667 -0.1144 -2.4292 6 1 1.3875 0.8492 -2.5198 7 6 2.3289 -0.7690 -3.5627 8 7 2.9125 -1.9436 -3.4524 9 14 2.1214 0.0166 -5.2447 10 1 3.3080 0.8561 -5.5488 11 1 1.9897 -1.0455 -6.2742 12 1 0.9017 0.8637 -5.2485 13 6 2.0400 -0.7212 1.2492 14 1 1.7990 -1.7823 1.1850 15 6 1.3778 -0.1238 2.4894 16 6 1.9932 -0.7476 3.7441 17 6 3.4893 -0.4294 3.7927 18 6 4.1763 -1.0353 2.5648 19 7 3.4956 -0.5523 1.3556 20 6 4.1925 0.0396 0.3654 21 8 3.6065 0.5446 -0.5724 22 6 5.6682 0.0746 0.4196 23 6 6.5270 0.7715 -0.4631 24 6 7.7817 0.5170 -0.0234 25 6 9.0622 1.0366 -0.6245 26 6 9.0349 2.4350 -1.2447 27 6 9.1138 1.1995 -2.1449 28 7 7.6719 -0.2891 1.0544 29 6 8.8004 -0.8038 1.8341 30 7 6.4357 -0.5397 1.2978 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.4489 -1.5558 -1.1149 35 1 3.2352 -2.4011 -4.2444 36 1 0.3079 -0.3310 2.4674 37 1 1.5399 0.9539 2.5019 38 1 1.8523 -1.8281 3.7189 39 1 1.5059 -0.3385 4.6291 40 1 3.9224 -0.8540 4.6984 41 1 3.6321 0.6512 3.7933 42 1 4.1131 -2.1225 2.6101 43 1 5.2221 -0.7287 2.5427 44 1 6.2413 1.3819 -1.3070 45 1 9.9776 0.7275 -0.1200 46 1 8.0907 2.9790 -1.2184 47 1 9.9327 3.0457 -1.1486 48 1 10.0634 0.9978 -2.6408 49 1 8.2216 0.9303 -2.7105 50 1 9.0337 -0.1071 2.6392 51 1 8.5375 -1.7732 2.2573 52 1 9.6697 -0.9141 1.1858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752147952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:33 Heat of formation + Delta-G solvation = 136.395394 kcal Electronic energy + Delta-G solvation = -32699.540580 eV Core-core repulsion = 28704.327010 eV Total energy + Delta-G solvation = -3995.213570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -42.46709 -39.78550 -37.28005 -36.67189 -35.13116 -33.27837 -32.32371 -32.07353 -30.18545 -29.68803 -27.71929 -27.36219 -25.00449 -24.11316 -23.59062 -22.52184 -22.47078 -22.12043 -20.38678 -19.98367 -19.70492 -18.49259 -17.14787 -16.60020 -16.13147 -16.00361 -15.28693 -15.07336 -14.75804 -14.46161 -14.29287 -14.02698 -13.72254 -13.60969 -13.32897 -13.24592 -13.04201 -12.80750 -12.64519 -12.55344 -12.16159 -12.03090 -11.83821 -11.74606 -11.64708 -11.27056 -11.14960 -11.04844 -10.98598 -10.70652 -10.66557 -10.58998 -10.51735 -10.40837 -10.08253 -9.72037 -9.55753 -9.32980 -8.80455 -8.52219 -8.50760 -8.24030 -7.81064 -6.38460 -5.41229 -2.61210 1.92168 2.44099 2.59051 3.62173 3.63712 3.67067 3.68331 3.84640 4.20897 4.31970 4.50142 4.74686 4.85271 4.85871 4.86747 4.95335 4.99771 5.06652 5.12886 5.19601 5.26065 5.40001 5.50020 5.53851 5.60431 5.67716 5.78562 5.82252 5.86968 5.90833 6.01266 6.02427 6.05615 6.05878 6.15140 6.20448 6.24289 6.28407 6.29775 6.33250 6.49837 6.57306 6.62268 6.77383 6.92031 6.98561 7.14129 7.24038 7.56005 8.02197 8.11833 8.29519 8.75887 9.17875 9.87257 10.45597 10.80703 11.83099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005414 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.041233 B = 5171.013007 C = 8263.814935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.062 0.938 4 N -0.691 5.691 5 C -0.184 4.184 6 H 0.064 0.936 7 C -0.026 4.026 8 N -0.943 5.943 9 Si 0.897 3.103 10 H -0.296 1.296 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.149 3.851 14 H 0.064 0.936 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.092 3.908 19 N -0.605 5.605 20 C 0.559 3.441 21 O -0.429 6.429 22 C 0.018 3.982 23 C -0.173 4.173 24 C 0.040 3.960 25 C -0.095 4.095 26 C -0.163 4.163 27 C -0.163 4.163 28 N -0.293 5.293 29 C 0.089 3.911 30 N -0.274 5.274 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.157 0.843 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 4.240 16.334 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.079 0.921 4 N -0.332 5.332 5 C -0.317 4.317 6 H 0.082 0.918 7 C -0.219 4.219 8 N -0.594 5.594 9 Si 0.730 3.270 10 H -0.224 1.224 11 H -0.224 1.224 12 H -0.212 1.212 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.166 4.166 16 C -0.156 4.156 17 C -0.170 4.170 18 C -0.032 4.032 19 N -0.342 5.342 20 C 0.342 3.658 21 O -0.294 6.294 22 C -0.142 4.142 23 C -0.201 4.201 24 C -0.084 4.084 25 C -0.115 4.115 26 C -0.201 4.201 27 C -0.201 4.201 28 N -0.080 5.080 29 C -0.052 4.052 30 N -0.109 5.109 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.175 0.825 45 H 0.129 0.871 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.098 0.902 51 H 0.112 0.888 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.450 3.902 16.617 21.127 hybrid contribution 0.289 0.298 -1.503 1.559 sum 12.739 4.200 15.114 20.208 Atomic orbital electron populations 1.22557 0.99760 1.00618 0.99918 1.20498 0.90436 0.97031 0.85108 0.92093 1.42319 1.68856 1.20957 1.01060 1.19040 1.28397 1.00411 0.83817 0.91842 1.24552 1.02863 0.97431 0.97095 1.69653 1.47112 1.15283 1.27386 0.86292 0.77348 0.77832 0.85485 1.22374 1.22429 1.21243 1.21359 0.78843 0.99525 0.95675 0.91779 1.21929 0.99898 1.00667 0.94125 1.21526 0.95597 1.00757 0.97746 1.21913 0.95944 1.01168 0.98021 1.22241 0.99451 0.98096 0.83435 1.47575 1.06985 1.61175 1.18486 1.17038 0.83371 0.82500 0.82896 1.91211 1.66348 1.40483 1.31328 1.22338 0.95215 1.00928 0.95754 1.21399 0.89843 1.05888 1.02932 1.20321 0.95635 0.99824 0.92607 1.20225 0.93691 1.01228 0.96344 1.23087 1.03940 0.89991 1.03041 1.23134 1.04208 1.01508 0.91214 1.45276 1.05228 1.35474 1.21975 1.22032 0.85997 1.01189 0.95961 1.73350 0.89332 1.23356 1.24848 0.93750 0.94433 0.92686 0.78921 0.94325 0.90681 0.91706 0.92076 0.92383 0.91698 0.92078 0.92798 0.86114 0.82505 0.87050 0.87937 0.88289 0.88217 0.87610 0.90239 0.88775 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 8.73 37.16 0.32 -2.95 16 2 C 0.18 3.89 1.80 -67.93 -0.12 3.77 16 3 H 0.06 1.46 6.37 -51.93 -0.33 1.13 16 4 N -0.69 -18.52 3.06 -53.43 -0.16 -18.69 16 5 C -0.18 -5.46 8.33 -15.06 -0.13 -5.59 16 6 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.89 16 8 N -0.94 -30.40 13.06 55.49 0.72 -29.68 16 9 Si 0.90 24.17 29.55 -169.99 -5.02 19.15 16 10 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 11 H -0.30 -8.06 7.11 56.52 0.40 -7.65 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C 0.15 2.72 2.54 -67.83 -0.17 2.55 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -1.82 4.56 -26.83 -0.12 -1.94 16 16 C -0.12 -1.42 5.89 -26.69 -0.16 -1.58 16 17 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 18 C 0.09 1.37 6.12 -3.71 -0.02 1.35 16 19 N -0.61 -11.14 2.98 -166.63 -0.50 -11.64 16 20 C 0.56 12.01 7.32 -12.39 -0.09 11.92 16 21 O -0.43 -10.85 10.06 5.31 0.05 -10.80 16 22 C 0.02 0.35 6.82 -82.76 -0.56 -0.22 16 23 C -0.17 -3.09 9.86 -39.36 -0.39 -3.48 16 24 C 0.04 0.57 6.60 -82.21 -0.54 0.03 16 25 C -0.10 -0.99 5.93 -91.77 -0.54 -1.54 16 26 C -0.16 -1.56 10.05 -26.69 -0.27 -1.83 16 27 C -0.16 -1.70 10.06 -26.70 -0.27 -1.97 16 28 N -0.29 -3.94 3.70 -63.85 -0.24 -4.17 16 29 C 0.09 0.69 11.05 59.85 0.66 1.35 16 30 N -0.27 -4.47 8.46 33.42 0.28 -4.19 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.60 6.45 -51.93 -0.34 0.27 16 33 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 34 H 0.38 11.01 7.62 -40.82 -0.31 10.70 16 35 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 36 H 0.07 1.00 6.69 -51.93 -0.35 0.65 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.12 1.83 4.17 -69.81 -0.29 1.54 16 44 H 0.16 2.90 8.06 -52.49 -0.42 2.48 16 45 H 0.11 0.86 7.18 -51.93 -0.37 0.49 16 46 H 0.10 1.10 7.94 -51.93 -0.41 0.69 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.11 1.35 7.97 -51.92 -0.41 0.94 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.09 0.51 7.13 -51.93 -0.37 0.14 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -36.11 400.76 -10.12 -46.23 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.64 Total: 10.55 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.66 Total: -2.80 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: 0.11 Total: -68.37 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.05 Total: -10.80 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.11 -10.12 -46.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.623 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds