Wall clock time and date at job start Wed Apr 1 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 N 1.46497 * 109.47058 * 240.00564 * 2 1 3 5 5 C 1.36936 * 120.00262 * 70.13805 * 4 2 1 6 6 H 1.07994 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99769 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99496 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47157 * 90.00221 * 9 7 5 11 11 H 1.48503 * 109.46921 * 209.99804 * 9 7 5 12 12 H 1.48502 * 109.47574 * 330.00069 * 9 7 5 13 13 C 1.53001 * 109.47256 * 119.99961 * 2 1 3 14 14 H 1.09000 * 109.69579 * 67.93515 * 13 2 1 15 15 C 1.52755 * 109.50934 * 307.81597 * 13 2 1 16 16 C 1.53047 * 109.37954 * 185.70461 * 15 13 2 17 17 C 1.53033 * 109.53896 * 61.24299 * 16 15 13 18 18 C 1.53195 * 109.31286 * 298.63396 * 17 16 15 19 19 N 1.46922 * 109.58446 * 188.28651 * 13 2 1 20 20 C 1.34780 * 120.63297 * 353.42343 * 19 13 2 21 21 O 1.21569 * 119.99884 * 6.48893 * 20 19 13 22 22 C 1.47710 * 119.99904 * 186.49064 * 20 19 13 23 23 C 1.41509 * 126.51770 * 186.97001 * 22 20 19 24 24 C 1.35365 * 105.50303 * 179.75642 * 23 22 20 25 25 C 1.50695 * 126.38581 * 180.25779 * 24 23 22 26 26 C 1.53005 * 117.49788 * 33.72503 * 25 24 23 27 27 C 1.52996 * 117.49952 * 325.06795 * 25 24 23 28 28 N 1.35035 * 107.22783 * 0.24184 * 24 23 22 29 29 C 1.46505 * 124.88386 * 179.97438 * 28 24 23 30 30 N 1.28462 * 110.23480 * 359.97438 * 28 24 23 31 31 H 1.09002 * 109.46917 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47099 * 299.99916 * 1 2 3 33 33 H 1.08998 * 109.47166 * 59.99403 * 1 2 3 34 34 H 0.96997 * 119.99844 * 250.14400 * 4 2 1 35 35 H 0.96994 * 119.99966 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.56314 * 65.67524 * 15 13 2 37 37 H 1.08991 * 109.36441 * 305.61590 * 15 13 2 38 38 H 1.08998 * 109.46034 * 301.21779 * 16 15 13 39 39 H 1.08998 * 109.44533 * 181.25841 * 16 15 13 40 40 H 1.08994 * 109.50185 * 178.68168 * 17 16 15 41 41 H 1.09001 * 109.52705 * 58.60144 * 17 16 15 42 42 H 1.09000 * 109.58676 * 294.84918 * 18 17 16 43 43 H 1.08999 * 109.58811 * 174.42442 * 18 17 16 44 44 H 1.07994 * 127.24650 * 0.02562 * 23 22 20 45 45 H 1.08998 * 115.55256 * 179.39154 * 25 24 23 46 46 H 1.09003 * 117.49995 * 359.97438 * 26 25 24 47 47 H 1.09001 * 117.49743 * 145.01858 * 26 25 24 48 48 H 1.09006 * 117.50267 * 214.97998 * 27 25 24 49 49 H 1.09010 * 117.49954 * 359.97213 * 27 25 24 50 50 H 1.08997 * 109.47175 * 89.99588 * 29 28 24 51 51 H 1.08992 * 109.47238 * 209.99766 * 29 28 24 52 52 H 1.09002 * 109.46899 * 329.99991 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.8667 -0.1144 -2.4292 6 1 1.3875 0.8492 -2.5198 7 6 2.3289 -0.7690 -3.5627 8 7 2.9125 -1.9436 -3.4524 9 14 2.1214 0.0166 -5.2447 10 1 3.3080 0.8561 -5.5488 11 1 1.9897 -1.0455 -6.2742 12 1 0.9017 0.8637 -5.2485 13 6 2.0400 -0.7212 1.2492 14 1 1.7990 -1.7823 1.1850 15 6 1.3778 -0.1238 2.4894 16 6 1.9932 -0.7476 3.7441 17 6 3.4893 -0.4294 3.7927 18 6 4.1763 -1.0353 2.5648 19 7 3.4956 -0.5523 1.3556 20 6 4.1925 0.0396 0.3654 21 8 3.6065 0.5446 -0.5724 22 6 5.6682 0.0746 0.4196 23 6 6.5270 0.7715 -0.4631 24 6 7.7817 0.5170 -0.0234 25 6 9.0622 1.0366 -0.6245 26 6 9.0349 2.4350 -1.2447 27 6 9.1138 1.1995 -2.1449 28 7 7.6719 -0.2891 1.0544 29 6 8.8004 -0.8038 1.8341 30 7 6.4357 -0.5397 1.2978 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.4489 -1.5558 -1.1149 35 1 3.2352 -2.4011 -4.2444 36 1 0.3079 -0.3310 2.4674 37 1 1.5399 0.9539 2.5019 38 1 1.8523 -1.8281 3.7189 39 1 1.5059 -0.3385 4.6291 40 1 3.9224 -0.8540 4.6984 41 1 3.6321 0.6512 3.7933 42 1 4.1131 -2.1225 2.6101 43 1 5.2221 -0.7287 2.5427 44 1 6.2413 1.3819 -1.3070 45 1 9.9776 0.7275 -0.1200 46 1 8.0907 2.9790 -1.2184 47 1 9.9327 3.0457 -1.1486 48 1 10.0634 0.9978 -2.6408 49 1 8.2216 0.9303 -2.7105 50 1 9.0337 -0.1071 2.6392 51 1 8.5375 -1.7732 2.2573 52 1 9.6697 -0.9141 1.1858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752147952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:32 Heat of formation + Delta-G solvation = 113.329290 kcal Electronic energy + Delta-G solvation = -32700.540801 eV Core-core repulsion = 28704.327010 eV Total energy + Delta-G solvation = -3996.213791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.68961 -41.28953 -38.17239 -38.11435 -36.90576 -34.58829 -33.97543 -33.55235 -31.60195 -31.25519 -29.40277 -28.45875 -26.44792 -25.87770 -24.74514 -24.00904 -23.40328 -23.27228 -21.69348 -21.48036 -20.92783 -19.90880 -18.84086 -18.11751 -17.35415 -17.22401 -16.75983 -16.71043 -16.01967 -15.79550 -15.54387 -15.46085 -15.22932 -14.86320 -14.78684 -14.65630 -14.49659 -14.24148 -13.85841 -13.53712 -13.50671 -13.43471 -13.37047 -13.00362 -12.81170 -12.80424 -12.57080 -12.49906 -12.43812 -12.22171 -12.11142 -12.00249 -11.76121 -11.69281 -11.56746 -11.41712 -11.23062 -10.88499 -10.81266 -10.02888 -9.90215 -9.68094 -9.36923 -8.54263 -7.76796 -4.94866 0.65969 1.08052 1.41520 1.45713 1.52324 1.58868 2.23162 2.63101 2.66385 3.01309 3.29804 3.52948 3.56666 3.72567 3.86656 3.91159 4.01400 4.04867 4.06729 4.17116 4.20511 4.32019 4.40280 4.40617 4.42989 4.47148 4.61493 4.64556 4.66544 4.73664 4.78001 4.78889 4.90049 4.92776 4.97852 5.00487 5.08791 5.10173 5.13394 5.19477 5.19919 5.24187 5.26772 5.38978 5.43603 5.50971 5.60010 5.63557 5.89421 6.05606 6.43915 6.66335 6.97165 7.48653 7.60072 8.27788 8.51126 9.48629 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005414 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.041233 B = 5171.013007 C = 8263.814935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.177 3.823 3 H 0.036 0.964 4 N -0.698 5.698 5 C -0.172 4.172 6 H 0.057 0.943 7 C -0.092 4.092 8 N -0.980 5.980 9 Si 0.958 3.042 10 H -0.299 1.299 11 H -0.297 1.297 12 H -0.273 1.273 13 C 0.151 3.849 14 H 0.056 0.944 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.124 4.124 18 C 0.086 3.914 19 N -0.603 5.603 20 C 0.553 3.447 21 O -0.489 6.489 22 C -0.023 4.023 23 C -0.213 4.213 24 C 0.058 3.942 25 C -0.095 4.095 26 C -0.153 4.153 27 C -0.171 4.171 28 N -0.280 5.280 29 C 0.073 3.927 30 N -0.266 5.266 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.155 0.845 46 H 0.080 0.920 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.069 0.931 50 H 0.108 0.892 51 H 0.104 0.896 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 4.415 19.544 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 H 0.054 0.946 4 N -0.336 5.336 5 C -0.305 4.305 6 H 0.075 0.925 7 C -0.282 4.282 8 N -0.634 5.634 9 Si 0.790 3.210 10 H -0.228 1.228 11 H -0.224 1.224 12 H -0.198 1.198 13 C 0.047 3.953 14 H 0.074 0.926 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.162 4.162 18 C -0.036 4.036 19 N -0.339 5.339 20 C 0.338 3.662 21 O -0.359 6.359 22 C -0.181 4.181 23 C -0.241 4.241 24 C -0.068 4.068 25 C -0.115 4.115 26 C -0.191 4.191 27 C -0.209 4.209 28 N -0.067 5.067 29 C -0.065 4.065 30 N -0.102 5.102 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.192 0.808 35 H 0.049 0.951 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.173 0.827 46 H 0.098 0.902 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.087 0.913 50 H 0.126 0.874 51 H 0.122 0.878 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.444 4.088 19.921 24.944 hybrid contribution -0.193 0.276 -2.346 2.370 sum 14.251 4.364 17.575 23.044 Atomic orbital electron populations 1.22392 0.97610 1.00872 1.00769 1.20583 0.91704 0.95703 0.85126 0.94646 1.42385 1.68993 1.20345 1.01844 1.19257 1.26398 0.99609 0.85256 0.92487 1.25252 1.04056 0.98369 1.00531 1.69822 1.49214 1.16796 1.27617 0.85302 0.77403 0.76948 0.81331 1.22770 1.22400 1.19792 1.21341 0.79243 0.98748 0.95950 0.92607 1.21890 1.00589 1.00201 0.93159 1.21524 0.95233 1.01094 0.97239 1.21878 0.96117 1.00735 0.97493 1.22469 0.99641 0.98359 0.83151 1.47741 1.07192 1.60028 1.18907 1.17526 0.84603 0.81445 0.82633 1.91159 1.67770 1.43554 1.33412 1.22108 0.94595 1.03519 0.97902 1.21355 0.91948 1.07506 1.03309 1.20702 0.95814 0.98347 0.91935 1.20517 0.93093 1.01695 0.96146 1.23151 1.04402 0.89744 1.01804 1.23138 1.04030 1.02509 0.91193 1.45860 1.05520 1.33780 1.21514 1.22636 0.84708 1.02292 0.96901 1.73271 0.90440 1.22636 1.23889 0.93681 0.90410 0.94940 0.80823 0.95143 0.89039 0.92189 0.91449 0.89452 0.88500 0.92660 0.92509 0.86256 0.85149 0.82745 0.90180 0.84833 0.85307 0.91273 0.87367 0.87759 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 8.73 71.98 0.63 -5.54 16 2 C 0.18 8.06 1.80 44.99 0.08 8.14 16 3 H 0.04 1.82 6.37 -2.39 -0.02 1.81 16 4 N -0.70 -39.71 3.06 -322.94 -0.99 -40.69 16 5 C -0.17 -10.77 8.33 84.04 0.70 -10.07 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.09 -5.95 5.50 84.86 0.47 -5.48 16 8 N -0.98 -66.56 13.06 21.65 0.28 -66.28 16 9 Si 0.96 52.14 29.55 68.60 2.03 54.16 16 10 H -0.30 -16.28 7.11 99.48 0.71 -15.58 16 11 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 12 H -0.27 -14.03 7.11 99.48 0.71 -13.33 16 13 C 0.15 5.58 2.54 44.83 0.11 5.69 16 14 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 15 C -0.12 -3.22 4.56 30.53 0.14 -3.08 16 16 C -0.11 -2.34 5.89 30.62 0.18 -2.16 16 17 C -0.12 -2.68 6.08 30.67 0.19 -2.50 16 18 C 0.09 2.51 6.12 86.36 0.53 3.04 16 19 N -0.60 -22.97 2.98 -799.36 -2.38 -25.35 16 20 C 0.55 25.53 7.32 86.75 0.63 26.16 16 21 O -0.49 -27.00 10.06 -3.93 -0.04 -27.04 16 22 C -0.02 -0.94 6.82 42.46 0.29 -0.65 16 23 C -0.21 -8.24 9.86 22.41 0.22 -8.02 16 24 C 0.06 1.62 6.60 41.40 0.27 1.89 16 25 C -0.10 -1.77 5.93 -11.54 -0.07 -1.84 16 26 C -0.15 -2.73 10.05 30.62 0.31 -2.42 16 27 C -0.17 -3.45 10.06 30.62 0.31 -3.14 16 28 N -0.28 -7.08 3.70 -355.93 -1.32 -8.40 16 29 C 0.07 0.84 11.05 127.77 1.41 2.25 16 30 N -0.27 -8.69 8.46 -48.17 -0.41 -9.10 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.41 6.45 -2.38 -0.02 2.39 16 33 H 0.03 1.39 7.90 -2.39 -0.02 1.37 16 34 H 0.36 22.47 7.62 -92.71 -0.71 21.77 16 35 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.09 2.16 6.69 -2.39 -0.02 2.15 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.12 3.55 4.17 -25.52 -0.11 3.44 16 44 H 0.13 5.55 8.06 -2.91 -0.02 5.53 16 45 H 0.16 1.58 7.18 -2.39 -0.02 1.57 16 46 H 0.08 1.80 7.94 -2.39 -0.02 1.78 16 47 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.07 1.92 7.97 -2.38 -0.02 1.90 16 50 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.12 0.73 7.13 -2.39 -0.02 0.72 16 Total: -1.00 -87.53 400.76 3.70 -83.83 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.12 Total: 36.58 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.40 Total: 2.28 kcal Atomic # 7 Polarization: -145.01 SS G_CDS: -4.81 Total: -149.82 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.03 Total: 54.16 kcal Total: -87.53 3.70 -83.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.158 kcal (2) G-P(sol) polarization free energy of solvation -87.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds