Wall clock time and date at job start Wed Apr 1 2020 04:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46945 * 2 1 4 4 N 1.46500 * 109.47181 * 239.99450 * 2 1 3 5 5 C 1.36935 * 120.00027 * 84.99951 * 4 2 1 6 6 H 1.08000 * 119.99582 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00311 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99666 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47465 * 59.99621 * 9 7 5 11 11 H 1.48508 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47154 * 299.99618 * 9 7 5 13 13 C 1.53004 * 109.47096 * 119.99456 * 2 1 3 14 14 C 1.53042 * 109.45957 * 300.00410 * 13 2 1 15 15 C 1.53187 * 109.31049 * 181.38811 * 14 13 2 16 16 N 1.46928 * 108.77574 * 305.35843 * 15 14 13 17 17 C 1.34777 * 120.63543 * 233.59115 * 16 15 14 18 18 O 1.21284 * 119.99520 * 5.35951 * 17 16 15 19 19 C 1.50697 * 120.00364 * 185.36295 * 17 16 15 20 20 H 1.09005 * 109.71021 * 25.83202 * 19 17 16 21 21 C 1.53384 * 109.71829 * 265.22185 * 19 17 16 22 22 C 1.53022 * 109.72571 * 189.76806 * 21 19 17 23 23 C 1.53375 * 109.75234 * 71.70308 * 22 21 19 24 24 C 1.50951 * 108.24384 * 309.31244 * 23 22 21 25 25 N 1.30035 * 128.36001 * 196.72256 * 24 23 22 26 26 N 1.40315 * 108.15427 * 179.89093 * 25 24 23 27 27 H 0.96998 * 126.00450 * 180.02562 * 26 25 24 28 28 C 1.35200 * 107.99164 * 0.05302 * 26 25 24 29 29 C 1.34570 * 107.61759 * 0.03312 * 28 26 25 30 30 C 1.46927 * 118.73725 * 53.86598 * 16 15 14 31 31 C 1.53039 * 109.45838 * 60.06931 * 13 2 1 32 32 H 1.09001 * 109.47190 * 60.00481 * 1 2 3 33 33 H 1.09001 * 109.46597 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46881 * 300.00301 * 1 2 3 35 35 H 0.96998 * 120.00065 * 265.00153 * 4 2 1 36 36 H 0.97006 * 119.99738 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.45103 * 180.02562 * 13 2 1 38 38 H 1.08993 * 109.50142 * 61.43088 * 14 13 2 39 39 H 1.09005 * 109.49508 * 301.33181 * 14 13 2 40 40 H 1.08998 * 109.58827 * 185.57552 * 15 14 13 41 41 H 1.09000 * 109.59260 * 65.14595 * 15 14 13 42 42 H 1.08999 * 109.42999 * 69.68849 * 21 19 17 43 43 H 1.08995 * 109.38563 * 309.82047 * 21 19 17 44 44 H 1.08999 * 109.42674 * 311.61893 * 22 21 19 45 45 H 1.09001 * 109.37777 * 191.75919 * 22 21 19 46 46 H 1.08997 * 109.71412 * 69.01412 * 23 22 21 47 47 H 1.08999 * 109.71583 * 189.61752 * 23 22 21 48 48 H 1.07995 * 126.19034 * 180.02562 * 28 26 25 49 49 H 1.08999 * 109.58876 * 65.92264 * 30 16 15 50 50 H 1.08993 * 109.58738 * 186.35521 * 30 16 15 51 51 H 1.09005 * 109.49893 * 298.56212 * 31 13 2 52 52 H 1.09005 * 109.50155 * 58.66277 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5092 8 7 2.9244 -1.9393 -3.4500 9 14 2.7904 0.2697 -5.1182 10 1 3.7464 1.3915 -4.9368 11 1 3.2993 -0.6489 -6.1683 12 1 1.4684 0.8074 -5.5285 13 6 2.0401 -0.7212 1.2493 14 6 1.5297 0.0006 2.4987 15 6 2.0706 -0.7036 3.7470 16 7 1.7086 -2.1261 3.6817 17 6 1.0559 -2.7162 4.7027 18 8 0.6760 -2.0523 5.6439 19 6 0.7983 -4.2007 4.6747 20 1 1.5502 -4.6928 4.0578 21 6 -0.5989 -4.4728 4.1034 22 6 -0.9582 -5.9475 4.2976 23 6 -1.2349 -6.2226 5.7809 24 6 -0.0809 -5.6763 6.5862 25 7 0.2421 -5.9433 7.8172 26 7 1.3900 -5.2030 8.1383 27 1 1.8513 -5.2077 8.9916 28 6 1.7397 -4.4815 7.0498 29 6 0.8492 -4.7527 6.0780 30 6 2.0770 -2.8946 2.4849 31 6 1.5312 -2.1645 1.2483 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 2.2491 -1.6319 -1.1525 36 1 3.2478 -2.3966 -4.2420 37 1 3.1300 -0.7206 1.2492 38 1 0.4401 -0.0214 2.5119 39 1 1.8731 1.0350 2.4870 40 1 1.6317 -0.2555 4.6384 41 1 3.1555 -0.6039 3.7817 42 1 -0.6085 -4.2344 3.0398 43 1 -1.3289 -3.8506 4.6210 44 1 -0.1286 -6.5700 3.9622 45 1 -1.8476 -6.1831 3.7132 46 1 -2.1590 -5.7281 6.0804 47 1 -1.3224 -7.2965 5.9457 48 1 2.5814 -3.8090 6.9739 49 1 3.1624 -2.9699 2.4187 50 1 1.6423 -3.8924 2.5433 51 1 0.4414 -2.1661 1.2734 52 1 1.8756 -2.6711 0.3467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753275125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:27 Heat of formation + Delta-G solvation = 17.398548 kcal Electronic energy + Delta-G solvation = -31473.558039 eV Core-core repulsion = 27473.184379 eV Total energy + Delta-G solvation = -4000.373660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.58469 -41.14652 -39.27104 -37.28781 -36.76749 -34.63019 -33.48055 -32.29220 -31.81463 -31.41101 -29.96319 -29.44086 -26.82581 -26.06415 -25.16123 -24.21334 -23.17293 -22.73607 -22.04764 -20.61680 -19.79720 -19.43028 -19.19953 -18.58253 -18.11259 -16.86119 -16.64660 -16.21134 -15.97368 -15.76808 -15.74585 -15.42117 -15.34337 -15.08530 -14.86307 -14.53089 -14.22038 -14.18105 -14.02157 -13.78684 -13.60091 -13.39946 -13.06824 -12.93450 -12.85093 -12.82873 -12.72381 -12.58559 -12.25074 -12.17292 -12.07232 -11.95361 -11.71552 -11.68632 -11.54894 -11.35258 -11.16572 -11.04712 -10.83980 -10.57911 -10.34472 -9.56857 -9.40181 -8.91923 -7.88580 -5.14271 0.95312 1.49980 1.51315 1.57287 1.64227 1.67348 1.97092 2.17446 2.60437 3.40837 3.44789 3.64666 3.81738 3.84107 3.87880 3.94039 4.01915 4.13539 4.20708 4.30419 4.31269 4.36461 4.43525 4.46462 4.52460 4.57969 4.61260 4.71153 4.71760 4.79944 4.86142 4.92599 4.93894 4.99361 5.00607 5.06953 5.11759 5.15533 5.17877 5.18960 5.27830 5.33029 5.40675 5.45630 5.47612 5.58295 5.66585 5.69591 5.76853 6.35354 6.42961 6.49028 6.71754 7.23910 7.42023 8.20948 8.44488 9.34572 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002327 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.830168 B =12027.582934 C =12615.323785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.035 0.965 4 N -0.733 5.733 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.282 1.282 13 C -0.080 4.080 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.604 5.604 17 C 0.523 3.477 18 O -0.578 6.578 19 C -0.023 4.023 20 H 0.116 0.884 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.042 4.042 24 C 0.080 3.920 25 N -0.323 5.323 26 N -0.480 5.480 27 H 0.450 0.550 28 C 0.080 3.920 29 C -0.238 4.238 30 C 0.109 3.891 31 C -0.122 4.122 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.187 0.813 49 H 0.080 0.920 50 H 0.108 0.892 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -7.712 21.036 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.053 0.947 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.209 1.209 13 C -0.099 4.099 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.336 5.336 17 C 0.312 3.688 18 O -0.458 6.458 19 C -0.045 4.045 20 H 0.134 0.866 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.081 4.081 24 C -0.089 4.089 25 N -0.145 5.145 26 N -0.189 5.189 27 H 0.297 0.703 28 C -0.067 4.067 29 C -0.250 4.250 30 C -0.013 4.013 31 C -0.160 4.160 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.210 0.790 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.204 0.796 49 H 0.098 0.902 50 H 0.126 0.874 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.110 -7.862 22.456 24.145 hybrid contribution 0.867 0.954 -1.373 1.883 sum -3.244 -6.908 21.083 22.422 Atomic orbital electron populations 1.22376 0.98331 1.00897 0.99953 1.20411 0.92451 0.94706 0.86073 0.94671 1.42649 1.78327 1.10537 1.05981 1.19538 1.34552 0.93982 0.88659 0.91333 1.25403 1.03365 0.96867 1.00951 1.69772 1.52802 1.09888 1.29271 0.85352 0.77730 0.77413 0.80113 1.20750 1.22280 1.20880 1.21233 0.99746 0.95275 0.93632 1.21904 1.01139 0.99631 0.92973 1.21589 1.00237 0.80403 0.98605 1.48231 1.56606 1.10915 1.17884 1.20914 0.76177 0.90522 0.81209 1.90652 1.52384 1.66504 1.36227 1.19787 1.01029 0.90087 0.93627 0.86597 1.21539 0.93350 0.98198 1.01407 1.21543 1.03607 0.94806 0.94431 1.20291 0.92833 1.01637 0.93329 1.22764 0.97967 0.96543 0.91611 1.76874 1.02147 1.19287 1.16220 1.46289 1.23160 1.35607 1.13846 0.70350 1.22296 1.00494 0.96463 0.87427 1.19696 1.00553 1.06991 0.97737 1.22040 1.01051 0.95601 0.82649 1.21948 1.01094 0.95448 0.97497 0.95403 0.93321 0.91677 0.78969 0.94161 0.91863 0.91620 0.90033 0.90070 0.90427 0.89676 0.92697 0.90287 0.88501 0.89619 0.88705 0.79606 0.90216 0.87387 0.91428 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 8.79 71.98 0.63 -4.62 16 2 C 0.17 6.26 2.72 44.99 0.12 6.38 16 3 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 4 N -0.73 -34.65 5.04 -322.93 -1.63 -36.28 16 5 C -0.24 -12.65 9.93 84.03 0.83 -11.82 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 9 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 C -0.08 -2.24 2.14 -10.76 -0.02 -2.26 16 14 C -0.12 -2.74 4.96 30.67 0.15 -2.58 16 15 C 0.11 2.46 6.44 86.36 0.56 3.02 16 16 N -0.60 -12.81 2.97 -818.07 -2.43 -15.23 16 17 C 0.52 12.19 6.45 87.66 0.57 12.76 16 18 O -0.58 -17.75 15.52 -3.04 -0.05 -17.80 16 19 C -0.02 -0.43 2.06 -12.10 -0.02 -0.45 16 20 H 0.12 1.68 6.22 -2.38 -0.01 1.67 16 21 C -0.11 -1.76 5.12 30.73 0.16 -1.60 16 22 C -0.11 -1.32 5.86 30.73 0.18 -1.14 16 23 C -0.04 -0.64 6.31 30.05 0.19 -0.45 16 24 C 0.08 1.71 7.11 43.48 0.31 2.02 16 25 N -0.32 -7.54 12.67 -47.12 -0.60 -8.14 16 26 N -0.48 -8.87 7.37 -57.89 -0.43 -9.30 16 27 H 0.45 5.29 8.96 -213.18 -1.91 3.38 16 28 C 0.08 1.54 11.15 83.33 0.93 2.47 16 29 C -0.24 -5.00 5.05 -20.08 -0.10 -5.10 16 30 C 0.11 2.09 6.19 86.51 0.54 2.62 16 31 C -0.12 -3.11 4.83 30.82 0.15 -2.97 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 34 H 0.06 1.82 6.46 -2.39 -0.02 1.81 16 35 H 0.38 18.68 6.04 -92.71 -0.56 18.12 16 36 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.60 6.51 -2.39 -0.02 1.58 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.25 7.92 -2.39 -0.02 1.23 16 43 H 0.05 1.11 8.07 -2.39 -0.02 1.09 16 44 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.11 1.60 5.36 -2.39 -0.01 1.59 16 51 H 0.07 1.75 6.51 -2.38 -0.02 1.73 16 52 H 0.06 1.97 6.46 -2.38 -0.02 1.96 16 Total: -1.00 -71.74 395.60 1.29 -70.45 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -1.52 Total: 32.99 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.63 Total: -7.36 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -4.80 Total: -125.67 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.74 1.29 -70.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753275125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.845 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds