Wall clock time and date at job start Wed Apr 1 2020 04:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46779 * 2 1 4 4 N 1.46500 * 109.47168 * 240.00187 * 2 1 3 5 5 C 1.36934 * 120.00170 * 84.99946 * 4 2 1 6 6 H 1.08005 * 119.99851 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99952 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00105 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99926 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47164 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47013 * 299.99653 * 9 7 5 12 12 H 1.48503 * 109.47001 * 59.99234 * 9 7 5 13 13 C 1.53004 * 109.47369 * 119.99829 * 2 1 3 14 14 C 1.53042 * 109.45633 * 60.02951 * 13 2 1 15 15 C 1.53195 * 109.30933 * 178.60097 * 14 13 2 16 16 N 1.46932 * 108.76470 * 54.65707 * 15 14 13 17 17 C 1.34774 * 120.62928 * 126.36019 * 16 15 14 18 18 O 1.21278 * 119.99972 * 174.43664 * 17 16 15 19 19 C 1.50699 * 120.00075 * 354.44065 * 17 16 15 20 20 H 1.08997 * 109.71224 * 335.09236 * 19 17 16 21 21 C 1.53387 * 109.71764 * 95.74683 * 19 17 16 22 22 C 1.53034 * 109.71849 * 170.21293 * 21 19 17 23 23 C 1.53378 * 109.74560 * 288.27219 * 22 21 19 24 24 C 1.50949 * 108.20856 * 50.64622 * 23 22 21 25 25 N 1.30121 * 128.28707 * 163.16896 * 24 23 22 26 26 N 1.40316 * 108.12246 * 180.30650 * 25 24 23 27 27 H 0.97004 * 126.00066 * 179.97438 * 26 25 24 28 28 C 1.35198 * 107.99117 * 359.95615 * 26 25 24 29 29 C 1.34570 * 107.62296 * 359.96428 * 28 26 25 30 30 C 1.46930 * 118.73546 * 306.38356 * 16 15 14 31 31 C 1.53036 * 109.45910 * 299.97883 * 13 2 1 32 32 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47283 * 299.99514 * 1 2 3 34 34 H 1.08994 * 109.47487 * 60.00628 * 1 2 3 35 35 H 0.96998 * 119.99690 * 264.99724 * 4 2 1 36 36 H 0.96994 * 119.99967 * 0.02562 * 8 7 5 37 37 H 1.08999 * 109.45956 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.49764 * 298.56141 * 14 13 2 39 39 H 1.09001 * 109.50155 * 58.66446 * 14 13 2 40 40 H 1.08996 * 109.59798 * 294.86847 * 15 14 13 41 41 H 1.08996 * 109.58232 * 174.43301 * 15 14 13 42 42 H 1.08993 * 109.43335 * 290.28717 * 21 19 17 43 43 H 1.09001 * 109.43100 * 50.13615 * 21 19 17 44 44 H 1.08998 * 109.42465 * 168.19027 * 22 21 19 45 45 H 1.08999 * 109.37973 * 48.32263 * 22 21 19 46 46 H 1.08999 * 109.71269 * 290.97142 * 23 22 21 47 47 H 1.09002 * 109.75025 * 170.34508 * 23 22 21 48 48 H 1.08006 * 126.18487 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.58475 * 293.82038 * 30 16 15 50 50 H 1.09001 * 109.58424 * 173.39659 * 30 16 15 51 51 H 1.09011 * 109.49625 * 301.33230 * 31 13 2 52 52 H 1.08995 * 109.50490 * 61.39891 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6113 -0.6619 -3.5092 8 7 2.9244 -1.9390 -3.4502 9 14 2.7891 0.2698 -5.1186 10 1 3.2982 -0.6485 -6.1686 11 1 1.4665 0.8065 -5.5285 12 1 3.7443 1.3924 -4.9377 13 6 2.0401 -0.7212 1.2493 14 6 1.5304 -2.1643 1.2486 15 6 2.0716 -2.8932 2.4826 16 7 1.7087 -2.1258 3.6819 17 6 1.0553 -2.7154 4.7026 18 8 0.8503 -2.1001 5.7274 19 6 0.5794 -4.1391 4.5706 20 1 0.4384 -4.3835 3.5177 21 6 1.6120 -5.0895 5.1897 22 6 1.0275 -6.5011 5.2770 23 6 -0.0467 -6.5505 6.3706 24 6 -1.0094 -5.4113 6.1379 25 7 -2.2052 -5.2538 6.6260 26 7 -2.7251 -4.0497 6.1273 27 1 -3.6002 -3.6810 6.3254 28 6 -1.7919 -3.4934 5.3226 29 6 -0.7233 -4.3112 5.3120 30 6 2.0712 -0.7034 3.7469 31 6 1.5303 0.0008 2.4986 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 2.2491 -1.6317 -1.1526 36 1 2.8317 -2.4229 -2.6147 37 1 3.1301 -0.7207 1.2493 38 1 0.4407 -2.1652 1.2741 39 1 1.8742 -2.6712 0.3470 40 1 3.1565 -2.9724 2.4139 41 1 1.6332 -3.8895 2.5398 42 1 2.5078 -5.1057 4.5690 43 1 1.8710 -4.7418 6.1898 44 1 1.8217 -7.2081 5.5168 45 1 0.5818 -6.7679 4.3187 46 1 0.4201 -6.4432 7.3496 47 1 -0.5807 -7.4993 6.3198 48 1 -1.8869 -2.5612 4.7855 49 1 3.1561 -0.6041 3.7813 50 1 1.6326 -0.2550 4.6383 51 1 1.8741 1.0352 2.4868 52 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753275126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:34 Heat of formation + Delta-G solvation = 39.019496 kcal Electronic energy + Delta-G solvation = -31580.804753 eV Core-core repulsion = 27581.368647 eV Total energy + Delta-G solvation = -3999.436106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.81795 -40.22770 -38.20179 -36.58167 -35.53452 -33.28567 -32.59610 -31.17251 -30.67396 -30.51937 -28.87286 -27.99411 -25.79598 -24.85605 -23.64512 -23.15293 -22.36465 -21.89231 -21.11005 -19.62116 -19.00903 -18.52888 -17.84286 -17.39982 -17.18622 -15.94619 -15.39756 -15.31637 -15.22353 -14.84554 -14.46471 -14.25669 -14.22336 -13.95904 -13.66437 -13.59447 -13.38402 -13.16176 -13.05878 -12.95032 -12.67179 -12.31488 -12.13100 -11.97094 -11.68072 -11.58225 -11.51913 -11.39239 -11.12134 -10.93026 -10.77756 -10.65884 -10.59154 -10.38438 -10.15267 -9.94505 -9.91320 -9.65904 -9.57229 -9.16033 -8.93120 -8.64396 -8.61100 -7.04222 -6.11100 -3.10379 1.73025 2.45417 2.54786 2.66674 3.01664 3.50449 3.53505 3.71002 4.12463 4.39239 4.48207 4.61368 4.64604 4.71613 4.85118 4.92935 4.96120 5.00093 5.06440 5.12890 5.17979 5.22583 5.32591 5.34118 5.46086 5.53359 5.54594 5.58107 5.60629 5.67744 5.69210 5.75832 5.80545 5.86880 5.89816 5.91760 6.00470 6.04774 6.10151 6.17942 6.21164 6.37271 6.41138 6.48677 6.57638 6.63029 6.82303 7.05833 7.08168 7.36834 7.47624 7.80756 8.14005 8.74791 9.22733 10.08799 10.24038 11.37360 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002405 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.404906 B =11640.838557 C =11932.102140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.183 3.817 3 H 0.046 0.954 4 N -0.736 5.736 5 C -0.327 4.327 6 H 0.063 0.937 7 C -0.046 4.046 8 N -0.945 5.945 9 Si 1.078 2.922 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.091 4.091 14 C -0.128 4.128 15 C 0.102 3.898 16 N -0.607 5.607 17 C 0.521 3.479 18 O -0.541 6.541 19 C -0.029 4.029 20 H 0.100 0.900 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.040 4.040 24 C 0.089 3.911 25 N -0.292 5.292 26 N -0.484 5.484 27 H 0.439 0.561 28 C 0.084 3.916 29 C -0.219 4.219 30 C 0.112 3.888 31 C -0.127 4.127 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.366 0.634 36 H 0.254 0.746 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.171 0.829 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -6.542 19.777 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.064 0.936 4 N -0.379 5.379 5 C -0.458 4.458 6 H 0.081 0.919 7 C -0.243 4.243 8 N -0.591 5.591 9 Si 0.909 3.091 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.223 1.223 13 C -0.110 4.110 14 C -0.167 4.167 15 C -0.021 4.021 16 N -0.340 5.340 17 C 0.309 3.691 18 O -0.418 6.418 19 C -0.052 4.052 20 H 0.117 0.883 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.079 4.079 25 N -0.114 5.114 26 N -0.192 5.192 27 H 0.283 0.717 28 C -0.062 4.062 29 C -0.231 4.231 30 C -0.010 4.010 31 C -0.166 4.166 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.189 0.811 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.166 -6.584 19.422 21.415 hybrid contribution -0.398 0.754 0.969 1.290 sum -6.564 -5.830 20.391 22.201 Atomic orbital electron populations 1.22510 0.99553 1.00695 0.99805 1.20124 0.91698 0.95160 0.85660 0.93585 1.42489 1.79312 1.09831 1.06296 1.20039 1.41549 0.95051 0.89196 0.91927 1.25715 0.99584 0.97513 1.01532 1.70894 1.51594 1.08300 1.28307 0.83265 0.75849 0.74307 0.75687 1.21067 1.22371 1.22332 1.21402 1.00326 0.94530 0.94765 1.21980 1.01312 0.96319 0.97044 1.21952 1.00534 0.95197 0.84372 1.48182 1.57152 1.10928 1.17744 1.20529 0.77227 0.88524 0.82813 1.90669 1.56974 1.65640 1.28506 1.19772 0.92515 0.92453 1.00426 0.88254 1.21511 0.96879 0.94119 1.01955 1.21558 0.97880 0.96518 0.99170 1.20152 0.93545 0.94233 0.99969 1.22275 0.93028 0.96927 0.95714 1.76969 1.11595 1.00650 1.22232 1.46247 1.16347 1.17941 1.38634 0.71717 1.21992 0.89718 0.98828 0.95691 1.19395 0.96875 0.98169 1.08616 1.21616 0.99834 0.80231 0.99302 1.22001 1.01402 0.99344 0.93826 0.93490 0.94351 0.93126 0.79952 0.93524 0.91126 0.91286 0.90111 0.91036 0.89574 0.90767 0.90874 0.90388 0.91032 0.89740 0.89820 0.81135 0.91680 0.89425 0.90819 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.79 37.16 0.33 -2.54 16 2 C 0.18 3.42 2.72 -67.93 -0.18 3.23 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 4 N -0.74 -17.37 5.04 -53.42 -0.27 -17.64 16 5 C -0.33 -8.93 9.93 -15.06 -0.15 -9.08 16 6 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 7 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 8 N -0.95 -28.44 13.70 55.49 0.76 -27.68 16 9 Si 1.08 25.53 29.92 -169.99 -5.09 20.45 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.09 -1.33 2.14 -90.58 -0.19 -1.52 16 14 C -0.13 -1.70 4.81 -26.61 -0.13 -1.83 16 15 C 0.10 1.08 6.31 -3.71 -0.02 1.06 16 16 N -0.61 -7.02 2.97 -172.76 -0.51 -7.54 16 17 C 0.52 6.48 6.43 -10.99 -0.07 6.41 16 18 O -0.54 -8.51 15.59 5.56 0.09 -8.43 16 19 C -0.03 -0.30 2.19 -92.64 -0.20 -0.50 16 20 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 21 C -0.11 -0.90 5.17 -26.51 -0.14 -1.04 16 22 C -0.11 -0.78 5.86 -26.52 -0.16 -0.93 16 23 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 24 C 0.09 1.02 7.10 -82.34 -0.58 0.43 16 25 N -0.29 -3.58 12.68 33.75 0.43 -3.15 16 26 N -0.48 -4.92 7.37 30.35 0.22 -4.70 16 27 H 0.44 3.01 8.96 -182.43 -1.64 1.37 16 28 C 0.08 0.91 11.18 -17.37 -0.19 0.71 16 29 C -0.22 -2.50 5.05 -104.98 -0.53 -3.03 16 30 C 0.11 1.32 6.42 -3.71 -0.02 1.30 16 31 C -0.13 -1.56 4.96 -26.62 -0.13 -1.69 16 32 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 33 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.37 8.77 4.87 -40.82 -0.20 8.57 16 36 H 0.25 7.43 6.77 -40.82 -0.28 7.16 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 39 H 0.08 1.22 6.46 -51.93 -0.34 0.88 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.76 5.34 -51.93 -0.28 0.48 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.09 1.09 7.04 -51.93 -0.37 0.73 16 51 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 52 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -34.61 394.22 -10.52 -45.13 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -9.44 Total: 8.54 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.65 Total: -10.93 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.63 Total: -60.70 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.09 Total: 20.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.61 -10.52 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753275126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.151 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds