Wall clock time and date at job start Wed Apr 1 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46779 * 2 1 4 4 N 1.46500 * 109.47168 * 240.00187 * 2 1 3 5 5 C 1.36934 * 120.00170 * 84.99946 * 4 2 1 6 6 H 1.08005 * 119.99851 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99952 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00105 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99926 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47164 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47013 * 299.99653 * 9 7 5 12 12 H 1.48503 * 109.47001 * 59.99234 * 9 7 5 13 13 C 1.53004 * 109.47369 * 119.99829 * 2 1 3 14 14 C 1.53042 * 109.45633 * 60.02951 * 13 2 1 15 15 C 1.53195 * 109.30933 * 178.60097 * 14 13 2 16 16 N 1.46932 * 108.76470 * 54.65707 * 15 14 13 17 17 C 1.34774 * 120.62928 * 126.36019 * 16 15 14 18 18 O 1.21278 * 119.99972 * 174.43664 * 17 16 15 19 19 C 1.50699 * 120.00075 * 354.44065 * 17 16 15 20 20 H 1.08997 * 109.71224 * 335.09236 * 19 17 16 21 21 C 1.53387 * 109.71764 * 95.74683 * 19 17 16 22 22 C 1.53034 * 109.71849 * 170.21293 * 21 19 17 23 23 C 1.53378 * 109.74560 * 288.27219 * 22 21 19 24 24 C 1.50949 * 108.20856 * 50.64622 * 23 22 21 25 25 N 1.30121 * 128.28707 * 163.16896 * 24 23 22 26 26 N 1.40316 * 108.12246 * 180.30650 * 25 24 23 27 27 H 0.97004 * 126.00066 * 179.97438 * 26 25 24 28 28 C 1.35198 * 107.99117 * 359.95615 * 26 25 24 29 29 C 1.34570 * 107.62296 * 359.96428 * 28 26 25 30 30 C 1.46930 * 118.73546 * 306.38356 * 16 15 14 31 31 C 1.53036 * 109.45910 * 299.97883 * 13 2 1 32 32 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47283 * 299.99514 * 1 2 3 34 34 H 1.08994 * 109.47487 * 60.00628 * 1 2 3 35 35 H 0.96998 * 119.99690 * 264.99724 * 4 2 1 36 36 H 0.96994 * 119.99967 * 0.02562 * 8 7 5 37 37 H 1.08999 * 109.45956 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.49764 * 298.56141 * 14 13 2 39 39 H 1.09001 * 109.50155 * 58.66446 * 14 13 2 40 40 H 1.08996 * 109.59798 * 294.86847 * 15 14 13 41 41 H 1.08996 * 109.58232 * 174.43301 * 15 14 13 42 42 H 1.08993 * 109.43335 * 290.28717 * 21 19 17 43 43 H 1.09001 * 109.43100 * 50.13615 * 21 19 17 44 44 H 1.08998 * 109.42465 * 168.19027 * 22 21 19 45 45 H 1.08999 * 109.37973 * 48.32263 * 22 21 19 46 46 H 1.08999 * 109.71269 * 290.97142 * 23 22 21 47 47 H 1.09002 * 109.75025 * 170.34508 * 23 22 21 48 48 H 1.08006 * 126.18487 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.58475 * 293.82038 * 30 16 15 50 50 H 1.09001 * 109.58424 * 173.39659 * 30 16 15 51 51 H 1.09011 * 109.49625 * 301.33230 * 31 13 2 52 52 H 1.08995 * 109.50490 * 61.39891 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6113 -0.6619 -3.5092 8 7 2.9244 -1.9390 -3.4502 9 14 2.7891 0.2698 -5.1186 10 1 3.2982 -0.6485 -6.1686 11 1 1.4665 0.8065 -5.5285 12 1 3.7443 1.3924 -4.9377 13 6 2.0401 -0.7212 1.2493 14 6 1.5304 -2.1643 1.2486 15 6 2.0716 -2.8932 2.4826 16 7 1.7087 -2.1258 3.6819 17 6 1.0553 -2.7154 4.7026 18 8 0.8503 -2.1001 5.7274 19 6 0.5794 -4.1391 4.5706 20 1 0.4384 -4.3835 3.5177 21 6 1.6120 -5.0895 5.1897 22 6 1.0275 -6.5011 5.2770 23 6 -0.0467 -6.5505 6.3706 24 6 -1.0094 -5.4113 6.1379 25 7 -2.2052 -5.2538 6.6260 26 7 -2.7251 -4.0497 6.1273 27 1 -3.6002 -3.6810 6.3254 28 6 -1.7919 -3.4934 5.3226 29 6 -0.7233 -4.3112 5.3120 30 6 2.0712 -0.7034 3.7469 31 6 1.5303 0.0008 2.4986 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 2.2491 -1.6317 -1.1526 36 1 2.8317 -2.4229 -2.6147 37 1 3.1301 -0.7207 1.2493 38 1 0.4407 -2.1652 1.2741 39 1 1.8742 -2.6712 0.3470 40 1 3.1565 -2.9724 2.4139 41 1 1.6332 -3.8895 2.5398 42 1 2.5078 -5.1057 4.5690 43 1 1.8710 -4.7418 6.1898 44 1 1.8217 -7.2081 5.5168 45 1 0.5818 -6.7679 4.3187 46 1 0.4201 -6.4432 7.3496 47 1 -0.5807 -7.4993 6.3198 48 1 -1.8869 -2.5612 4.7855 49 1 3.1561 -0.6041 3.7813 50 1 1.6326 -0.2550 4.6383 51 1 1.8741 1.0352 2.4868 52 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753275126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:33 Heat of formation + Delta-G solvation = 17.456598 kcal Electronic energy + Delta-G solvation = -31581.739790 eV Core-core repulsion = 27581.368647 eV Total energy + Delta-G solvation = -4000.371143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61811 -41.21451 -39.39338 -37.32295 -36.96484 -34.87860 -33.51835 -32.26791 -31.88797 -31.43315 -29.88575 -29.42679 -26.86540 -26.02197 -25.19875 -24.27473 -23.34739 -22.71247 -22.12964 -20.71472 -19.77067 -19.61229 -19.39424 -18.63923 -18.18656 -16.92772 -16.86436 -16.22448 -16.02798 -15.89114 -15.70222 -15.57561 -15.35257 -15.13290 -15.00430 -14.51548 -14.45627 -14.35887 -14.12690 -13.77049 -13.54179 -13.40667 -13.16355 -13.02752 -12.95882 -12.88795 -12.58899 -12.46492 -12.26618 -12.09869 -11.95783 -11.84505 -11.72896 -11.71700 -11.41526 -11.39633 -11.24180 -11.03121 -10.86854 -10.62517 -10.37010 -9.64004 -9.43381 -9.04554 -8.32799 -5.25374 0.91659 1.58268 1.59754 1.66135 1.68674 1.85106 1.93952 2.11463 2.73731 3.37435 3.44696 3.59932 3.69057 3.76785 3.79776 3.86505 3.95440 4.06760 4.11159 4.18730 4.27282 4.30170 4.36003 4.40837 4.47709 4.51896 4.55831 4.61453 4.68116 4.70506 4.81118 4.84515 4.90168 4.91037 4.95112 5.01119 5.04830 5.07123 5.11135 5.14739 5.20356 5.25899 5.30107 5.37924 5.44029 5.58103 5.65358 5.66305 5.67235 6.38800 6.43353 6.57666 6.68482 7.18181 7.19037 8.09665 8.19918 9.19678 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002405 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.404906 B =11640.838557 C =11932.102140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.033 0.967 4 N -0.746 5.746 5 C -0.325 4.325 6 H 0.060 0.940 7 C -0.104 4.104 8 N -0.976 5.976 9 Si 1.122 2.878 10 H -0.293 1.293 11 H -0.282 1.282 12 H -0.280 1.280 13 C -0.081 4.081 14 C -0.123 4.123 15 C 0.108 3.892 16 N -0.604 5.604 17 C 0.523 3.477 18 O -0.577 6.577 19 C -0.026 4.026 20 H 0.113 0.887 21 C -0.105 4.105 22 C -0.106 4.106 23 C -0.042 4.042 24 C 0.080 3.920 25 N -0.322 5.322 26 N -0.480 5.480 27 H 0.450 0.550 28 C 0.077 3.923 29 C -0.237 4.237 30 C 0.115 3.885 31 C -0.116 4.116 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.363 0.637 36 H 0.246 0.754 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.183 0.817 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -6.850 20.351 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.051 0.949 4 N -0.390 5.390 5 C -0.457 4.457 6 H 0.078 0.922 7 C -0.296 4.296 8 N -0.625 5.625 9 Si 0.948 3.052 10 H -0.220 1.220 11 H -0.208 1.208 12 H -0.207 1.207 13 C -0.100 4.100 14 C -0.161 4.161 15 C -0.014 4.014 16 N -0.336 5.336 17 C 0.312 3.688 18 O -0.457 6.457 19 C -0.048 4.048 20 H 0.131 0.869 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.081 4.081 24 C -0.088 4.088 25 N -0.145 5.145 26 N -0.189 5.189 27 H 0.296 0.704 28 C -0.070 4.070 29 C -0.249 4.249 30 C -0.007 4.007 31 C -0.155 4.155 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.197 0.803 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.200 0.800 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.100 0.900 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.111 -6.868 20.035 22.043 hybrid contribution -0.470 0.929 0.861 1.351 sum -6.580 -5.938 20.896 22.699 Atomic orbital electron populations 1.22353 0.98160 1.00854 1.00056 1.20351 0.92516 0.94536 0.85723 0.94927 1.42666 1.79593 1.09833 1.06878 1.20335 1.39766 0.95074 0.90515 0.92247 1.26990 1.00057 0.97702 1.04812 1.70986 1.54002 1.09362 1.28127 0.82679 0.76686 0.73578 0.72252 1.21959 1.20831 1.20656 1.21247 0.99671 0.95330 0.93742 1.21887 1.01231 0.95414 0.97586 1.21971 1.01139 0.95705 0.82555 1.48218 1.56743 1.10896 1.17770 1.20901 0.76474 0.89170 0.82205 1.90655 1.58392 1.66668 1.29939 1.19825 0.92475 0.91264 1.01194 0.86910 1.21544 0.97035 0.94518 1.01223 1.21554 0.98018 0.95928 0.98912 1.20316 0.93442 0.93639 1.00722 1.22809 0.93097 0.97752 0.95191 1.76912 1.12472 1.01747 1.23354 1.46294 1.16862 1.17476 1.38267 0.70398 1.22282 0.89845 0.99177 0.95677 1.19680 0.97524 0.98512 1.09219 1.21571 1.00275 0.80384 0.98518 1.21902 1.01307 0.99574 0.92714 0.93359 0.91291 0.95608 0.80340 0.94382 0.92066 0.91309 0.92067 0.90161 0.87160 0.89131 0.92434 0.88070 0.90571 0.89370 0.88770 0.80025 0.90852 0.89917 0.90023 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 8.79 71.98 0.63 -4.56 16 2 C 0.18 6.50 2.72 44.99 0.12 6.63 16 3 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 4 N -0.75 -35.46 5.04 -322.93 -1.63 -37.09 16 5 C -0.33 -17.81 9.93 84.03 0.83 -16.98 16 6 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 7 C -0.10 -5.92 5.50 84.86 0.47 -5.46 16 8 N -0.98 -59.40 13.70 21.65 0.30 -59.10 16 9 Si 1.12 51.38 29.92 68.60 2.05 53.43 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 C -0.08 -2.26 2.14 -10.77 -0.02 -2.28 16 14 C -0.12 -3.08 4.81 30.67 0.15 -2.94 16 15 C 0.11 2.05 6.31 86.36 0.54 2.59 16 16 N -0.60 -12.71 2.97 -818.90 -2.43 -15.15 16 17 C 0.52 12.13 6.43 87.66 0.56 12.69 16 18 O -0.58 -17.63 15.59 -3.02 -0.05 -17.67 16 19 C -0.03 -0.47 2.19 -12.10 -0.03 -0.50 16 20 H 0.11 1.74 5.95 -2.39 -0.01 1.72 16 21 C -0.11 -1.53 5.17 30.74 0.16 -1.37 16 22 C -0.11 -1.17 5.86 30.73 0.18 -0.99 16 23 C -0.04 -0.62 6.31 30.05 0.19 -0.43 16 24 C 0.08 1.73 7.10 43.44 0.31 2.04 16 25 N -0.32 -7.72 12.68 -47.13 -0.60 -8.32 16 26 N -0.48 -9.48 7.37 -57.88 -0.43 -9.91 16 27 H 0.45 5.96 8.96 -213.18 -1.91 4.05 16 28 C 0.08 1.60 11.18 83.33 0.93 2.53 16 29 C -0.24 -5.14 5.05 -20.10 -0.10 -5.24 16 30 C 0.11 2.49 6.42 86.36 0.55 3.04 16 31 C -0.12 -2.64 4.96 30.67 0.15 -2.49 16 32 H 0.05 1.60 6.46 -2.39 -0.02 1.58 16 33 H 0.07 1.88 6.46 -2.39 -0.02 1.86 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.36 17.63 4.87 -92.71 -0.45 17.18 16 36 H 0.25 14.69 6.77 -92.71 -0.63 14.07 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.73 6.51 -2.39 -0.02 1.72 16 39 H 0.06 1.81 6.46 -2.39 -0.02 1.80 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 1.58 5.34 -2.39 -0.01 1.57 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.04 8.07 -2.39 -0.02 1.02 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.94 7.04 -2.39 -0.02 1.92 16 51 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.07 1.59 6.51 -2.39 -0.02 1.57 16 Total: -1.00 -74.95 394.22 1.58 -73.37 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -1.27 Total: 34.15 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 5.64 Total: -13.72 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -4.79 Total: -129.56 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -74.95 1.58 -73.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753275126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.827 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds