Wall clock time and date at job start Wed Apr 1 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 C 1.53046 * 109.45916 * 180.02562 * 13 2 1 15 15 C 1.53184 * 109.31531 * 178.60226 * 14 13 2 16 16 N 1.46925 * 108.76562 * 54.65717 * 15 14 13 17 17 C 1.34773 * 120.62884 * 126.36278 * 16 15 14 18 18 O 1.21282 * 119.99742 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00255 * 0.02562 * 17 16 15 20 20 H 1.08999 * 115.55194 * 34.41576 * 19 17 16 21 21 C 1.52999 * 117.49790 * 248.74866 * 19 17 16 22 22 C 1.53001 * 117.49851 * 180.08848 * 19 17 16 23 23 H 1.08993 * 117.50300 * 359.97438 * 22 19 17 24 24 C 1.50700 * 117.49875 * 215.00036 * 22 19 17 25 25 C 1.34678 * 126.59043 * 324.68732 * 24 22 19 26 26 N 1.34127 * 108.02056 * 179.87238 * 25 24 22 27 27 C 1.30501 * 109.25632 * 0.39943 * 26 25 24 28 28 N 1.35051 * 108.70011 * 359.75574 * 27 26 25 29 29 C 1.46497 * 126.39858 * 179.97438 * 28 27 26 30 30 C 1.46924 * 118.73847 * 306.38295 * 16 15 14 31 31 C 1.53041 * 109.46326 * 59.97559 * 13 2 1 32 32 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 34 34 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 35 35 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 36 36 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46361 * 299.99944 * 13 2 1 38 38 H 1.08993 * 109.49786 * 298.57217 * 14 13 2 39 39 H 1.09007 * 109.49234 * 58.66389 * 14 13 2 40 40 H 1.09009 * 109.59762 * 294.86846 * 15 14 13 41 41 H 1.09001 * 109.70575 * 174.51271 * 15 14 13 42 42 H 1.09002 * 117.50115 * 359.97438 * 21 19 17 43 43 H 1.09003 * 117.50047 * 145.01898 * 21 19 17 44 44 H 1.07994 * 125.98636 * 0.02702 * 25 24 22 45 45 H 1.07996 * 125.65179 * 179.77214 * 27 26 25 46 46 H 1.08994 * 109.47278 * 270.00126 * 29 28 27 47 47 H 1.08999 * 109.47058 * 30.00013 * 29 28 27 48 48 H 1.08996 * 109.46713 * 149.99549 * 29 28 27 49 49 H 1.08999 * 109.58986 * 293.82443 * 30 16 15 50 50 H 1.09004 * 109.70078 * 173.46245 * 30 16 15 51 51 H 1.09003 * 109.49614 * 301.33584 * 31 13 2 52 52 H 1.09006 * 109.49735 * 61.42491 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 6 3.5704 -0.7218 -1.2488 15 6 4.0772 -1.4749 -2.4826 16 7 3.4747 -0.8770 -3.6819 17 6 4.2483 -0.4575 -4.7026 18 8 3.7388 0.0348 -5.6870 19 6 5.7463 -0.6001 -4.6209 20 1 6.1063 -1.4837 -4.0940 21 6 6.5722 0.6818 -4.4970 22 6 6.5692 -0.1031 -5.8112 23 1 6.0272 0.3266 -6.6535 24 6 7.8155 -0.8727 -6.1653 25 6 8.6581 -1.4761 -5.3051 26 7 9.6375 -2.0514 -6.0183 27 6 9.4387 -1.8203 -7.2872 28 7 8.3122 -1.0878 -7.4225 29 6 7.7305 -0.6119 -8.6801 30 6 2.0129 -0.7447 -3.7470 31 6 1.5291 -0.0001 -2.4987 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2491 -1.6318 1.1526 36 1 3.2478 -2.3964 4.2420 37 1 1.6765 -1.7489 -1.2491 38 1 3.9345 0.3052 -1.2741 39 1 3.9337 -1.2149 -0.3471 40 1 3.7903 -2.5243 -2.4139 41 1 5.1628 -1.3961 -2.5411 42 1 6.0322 1.6284 -4.4750 43 1 7.4759 0.6415 -3.8888 44 1 8.5605 -1.4955 -4.2297 45 1 10.0702 -2.1588 -8.0952 46 1 8.1391 0.3694 -8.9209 47 1 7.9717 -1.3121 -9.4798 48 1 6.6481 -0.5391 -8.5751 49 1 1.5575 -1.7344 -3.7813 50 1 1.7341 -0.1830 -4.6385 51 1 0.4394 0.0206 -2.4868 52 1 1.9126 1.0202 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753279178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:53 Heat of formation + Delta-G solvation = 60.790835 kcal Electronic energy + Delta-G solvation = -30515.957187 eV Core-core repulsion = 26517.465158 eV Total energy + Delta-G solvation = -3998.492029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.42191 -40.42564 -38.31525 -36.67532 -35.40244 -34.33073 -32.92285 -31.17730 -30.74194 -29.64711 -28.32360 -27.33114 -25.78345 -24.67109 -23.62389 -23.31592 -22.57453 -21.67804 -20.95674 -19.91831 -19.57307 -18.74596 -17.95319 -17.20068 -16.86907 -16.10296 -16.00153 -15.32846 -15.04808 -14.79089 -14.67959 -14.14611 -13.94469 -13.88071 -13.84029 -13.62068 -13.47134 -13.34334 -13.08852 -12.80695 -12.61285 -12.53083 -12.32844 -12.09245 -12.04191 -11.61758 -11.30306 -11.15626 -10.97907 -10.91490 -10.84782 -10.71509 -10.29041 -10.27628 -10.22215 -10.18273 -9.88310 -9.83940 -9.72166 -9.57548 -8.90244 -8.60445 -8.50644 -6.94764 -5.76628 -3.04494 1.59891 2.36570 2.42819 2.83863 2.96003 3.43445 3.48515 3.48939 3.71364 4.06258 4.29980 4.40096 4.44618 4.48756 4.58382 4.68482 4.70582 4.79677 4.93655 4.99399 5.01768 5.04296 5.10013 5.23558 5.33541 5.38855 5.42874 5.53349 5.56194 5.61968 5.68275 5.72725 5.78003 5.93130 5.94198 6.02574 6.09267 6.11376 6.20984 6.32113 6.42300 6.43318 6.48332 6.55546 6.66308 6.79182 6.86680 6.94416 7.12860 7.36976 7.70174 7.79291 8.09119 8.42457 9.53580 10.11706 10.46545 11.45968 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002235 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.242939 B =12523.695370 C =13953.081349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.122 4.122 15 C 0.104 3.896 16 N -0.600 5.600 17 C 0.546 3.454 18 O -0.553 6.553 19 C -0.173 4.173 20 H 0.131 0.869 21 C -0.129 4.129 22 C -0.056 4.056 23 H 0.122 0.878 24 C 0.010 3.990 25 C -0.022 4.022 26 N -0.491 5.491 27 C 0.178 3.822 28 N -0.458 5.458 29 C 0.069 3.931 30 C 0.112 3.888 31 C -0.127 4.127 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.169 0.831 45 H 0.205 0.795 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.078 0.922 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 2.129 -24.571 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.109 4.109 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.332 5.332 17 C 0.334 3.666 18 O -0.432 6.432 19 C -0.194 4.194 20 H 0.149 0.851 21 C -0.166 4.166 22 C -0.076 4.076 23 H 0.140 0.860 24 C -0.105 4.105 25 C -0.171 4.171 26 N -0.208 5.208 27 C -0.103 4.103 28 N -0.140 5.140 29 C -0.073 4.073 30 C -0.010 4.010 31 C -0.166 4.166 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.187 0.813 45 H 0.222 0.778 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.106 0.894 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.758 2.084 -24.747 26.018 hybrid contribution -0.587 0.462 0.696 1.021 sum 7.170 2.545 -24.051 25.226 Atomic orbital electron populations 1.22499 0.99586 1.00738 0.99829 1.20212 0.91561 0.95312 0.86097 0.93757 1.42402 1.78097 1.10604 1.05271 1.19171 1.36291 0.93757 0.87404 0.91426 1.24705 1.02376 0.95950 0.97933 1.69636 1.51073 1.08596 1.28939 0.86314 0.77734 0.78627 0.83787 1.21410 1.21756 1.21341 1.21381 0.95032 0.99900 0.94609 1.21884 0.95967 1.01015 0.97134 1.21959 0.98268 0.97336 0.84297 1.48066 1.07120 1.60422 1.17619 1.19523 0.87483 0.77260 0.82319 1.90653 1.75069 1.45607 1.31847 1.22419 0.91238 1.01667 1.04108 0.85140 1.23157 1.01226 0.94439 0.97820 1.20117 0.93048 1.00908 0.93534 0.85977 1.20271 0.98950 1.06752 0.84522 1.22043 0.93376 1.02010 0.99621 1.70298 1.25716 1.22701 1.02127 1.24947 0.90003 0.98820 0.96557 1.45214 1.21184 1.40899 1.06738 1.22084 1.00575 1.01032 0.83649 1.21645 0.78945 1.00816 0.99579 1.22014 1.01149 0.99612 0.93821 0.93040 0.94333 0.93611 0.78340 0.93528 0.91413 0.91865 0.88867 0.91239 0.89747 0.87416 0.86940 0.81342 0.77803 0.90347 0.89299 0.89338 0.91607 0.89405 0.90398 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.14 37.16 0.34 -2.54 16 2 C 0.18 3.30 2.47 -67.93 -0.17 3.13 16 3 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.98 4.41 -53.42 -0.24 -17.22 16 5 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 9 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 C -0.09 -1.33 1.79 -90.58 -0.16 -1.49 16 14 C -0.12 -1.75 5.22 -26.61 -0.14 -1.89 16 15 C 0.10 1.20 6.30 -3.72 -0.02 1.18 16 16 N -0.60 -7.34 2.97 -172.77 -0.51 -7.86 16 17 C 0.55 6.96 7.48 -10.99 -0.08 6.88 16 18 O -0.55 -8.55 15.67 5.56 0.09 -8.47 16 19 C -0.17 -1.72 4.48 -91.77 -0.41 -2.14 16 20 H 0.13 1.18 6.66 -51.93 -0.35 0.83 16 21 C -0.13 -1.12 9.76 -26.69 -0.26 -1.38 16 22 C -0.06 -0.53 5.53 -91.73 -0.51 -1.04 16 23 H 0.12 1.21 6.93 -51.93 -0.36 0.85 16 24 C 0.01 0.09 6.63 -81.60 -0.54 -0.45 16 25 C -0.02 -0.25 10.94 -17.81 -0.19 -0.44 16 26 N -0.49 -5.86 11.25 -14.66 -0.16 -6.02 16 27 C 0.18 1.58 12.56 -90.37 -1.14 0.44 16 28 N -0.46 -3.81 3.15 -121.37 -0.38 -4.19 16 29 C 0.07 0.32 10.96 59.85 0.66 0.97 16 30 C 0.11 1.35 6.43 -3.71 -0.02 1.33 16 31 C -0.13 -1.60 5.04 -26.61 -0.13 -1.74 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.38 9.56 7.58 -40.82 -0.31 9.25 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.58 7.41 -51.92 -0.38 1.20 16 40 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.08 0.84 5.67 -51.93 -0.29 0.54 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.11 0.84 7.94 -51.93 -0.41 0.43 16 44 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.09 0.43 7.38 -51.93 -0.38 0.05 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.11 7.01 -51.93 -0.36 0.74 16 51 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 52 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -33.61 412.65 -10.88 -44.49 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.56 Total: 8.74 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.03 Total: -6.08 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.57 Total: -61.92 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.61 -10.88 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753279178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.283 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds