Wall clock time and date at job start Wed Apr 1 2020 04:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 C 1.53046 * 109.45916 * 180.02562 * 13 2 1 15 15 C 1.53184 * 109.31531 * 178.60226 * 14 13 2 16 16 N 1.46925 * 108.76562 * 54.65717 * 15 14 13 17 17 C 1.34773 * 120.62884 * 126.36278 * 16 15 14 18 18 O 1.21282 * 119.99742 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00255 * 0.02562 * 17 16 15 20 20 H 1.08999 * 115.55194 * 34.41576 * 19 17 16 21 21 C 1.52999 * 117.49790 * 248.74866 * 19 17 16 22 22 C 1.53001 * 117.49851 * 180.08848 * 19 17 16 23 23 H 1.08993 * 117.50300 * 359.97438 * 22 19 17 24 24 C 1.50700 * 117.49875 * 215.00036 * 22 19 17 25 25 C 1.34678 * 126.59043 * 324.68732 * 24 22 19 26 26 N 1.34127 * 108.02056 * 179.87238 * 25 24 22 27 27 C 1.30501 * 109.25632 * 0.39943 * 26 25 24 28 28 N 1.35051 * 108.70011 * 359.75574 * 27 26 25 29 29 C 1.46497 * 126.39858 * 179.97438 * 28 27 26 30 30 C 1.46924 * 118.73847 * 306.38295 * 16 15 14 31 31 C 1.53041 * 109.46326 * 59.97559 * 13 2 1 32 32 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 33 33 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 34 34 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 35 35 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 36 36 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46361 * 299.99944 * 13 2 1 38 38 H 1.08993 * 109.49786 * 298.57217 * 14 13 2 39 39 H 1.09007 * 109.49234 * 58.66389 * 14 13 2 40 40 H 1.09009 * 109.59762 * 294.86846 * 15 14 13 41 41 H 1.09001 * 109.70575 * 174.51271 * 15 14 13 42 42 H 1.09002 * 117.50115 * 359.97438 * 21 19 17 43 43 H 1.09003 * 117.50047 * 145.01898 * 21 19 17 44 44 H 1.07994 * 125.98636 * 0.02702 * 25 24 22 45 45 H 1.07996 * 125.65179 * 179.77214 * 27 26 25 46 46 H 1.08994 * 109.47278 * 270.00126 * 29 28 27 47 47 H 1.08999 * 109.47058 * 30.00013 * 29 28 27 48 48 H 1.08996 * 109.46713 * 149.99549 * 29 28 27 49 49 H 1.08999 * 109.58986 * 293.82443 * 30 16 15 50 50 H 1.09004 * 109.70078 * 173.46245 * 30 16 15 51 51 H 1.09003 * 109.49614 * 301.33584 * 31 13 2 52 52 H 1.09006 * 109.49735 * 61.42491 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 6 3.5704 -0.7218 -1.2488 15 6 4.0772 -1.4749 -2.4826 16 7 3.4747 -0.8770 -3.6819 17 6 4.2483 -0.4575 -4.7026 18 8 3.7388 0.0348 -5.6870 19 6 5.7463 -0.6001 -4.6209 20 1 6.1063 -1.4837 -4.0940 21 6 6.5722 0.6818 -4.4970 22 6 6.5692 -0.1031 -5.8112 23 1 6.0272 0.3266 -6.6535 24 6 7.8155 -0.8727 -6.1653 25 6 8.6581 -1.4761 -5.3051 26 7 9.6375 -2.0514 -6.0183 27 6 9.4387 -1.8203 -7.2872 28 7 8.3122 -1.0878 -7.4225 29 6 7.7305 -0.6119 -8.6801 30 6 2.0129 -0.7447 -3.7470 31 6 1.5291 -0.0001 -2.4987 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2491 -1.6318 1.1526 36 1 3.2478 -2.3964 4.2420 37 1 1.6765 -1.7489 -1.2491 38 1 3.9345 0.3052 -1.2741 39 1 3.9337 -1.2149 -0.3471 40 1 3.7903 -2.5243 -2.4139 41 1 5.1628 -1.3961 -2.5411 42 1 6.0322 1.6284 -4.4750 43 1 7.4759 0.6415 -3.8888 44 1 8.5605 -1.4955 -4.2297 45 1 10.0702 -2.1588 -8.0952 46 1 8.1391 0.3694 -8.9209 47 1 7.9717 -1.3121 -9.4798 48 1 6.6481 -0.5391 -8.5751 49 1 1.5575 -1.7344 -3.7813 50 1 1.7341 -0.1830 -4.6385 51 1 0.4394 0.0206 -2.4868 52 1 1.9126 1.0202 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753279178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:51 Heat of formation + Delta-G solvation = 42.723960 kcal Electronic energy + Delta-G solvation = -30516.740626 eV Core-core repulsion = 26517.465158 eV Total energy + Delta-G solvation = -3999.275468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.09430 -41.41775 -39.45319 -37.61449 -36.79923 -34.92420 -34.60802 -32.52328 -32.04925 -30.44328 -29.91444 -27.80659 -26.90298 -26.09348 -24.88073 -24.27365 -23.63865 -22.38441 -22.12453 -21.09329 -20.52066 -19.75041 -19.11487 -18.63283 -17.74559 -17.07217 -16.76758 -16.59250 -16.26716 -15.79747 -15.55016 -15.49851 -15.40152 -15.04381 -14.80008 -14.63127 -14.43240 -14.18910 -14.03877 -13.81401 -13.66669 -13.50356 -13.40311 -13.34239 -12.96983 -12.84635 -12.78948 -12.71791 -12.28647 -12.21240 -12.16403 -11.95693 -11.79332 -11.69111 -11.47541 -11.33293 -11.17150 -10.96144 -10.90714 -10.74738 -10.47302 -9.64936 -9.22566 -8.92421 -7.88821 -5.14777 0.91269 1.45287 1.49094 1.50391 1.56418 1.80290 2.01823 2.16379 2.59632 2.94457 3.29236 3.44674 3.61520 3.68605 3.79916 3.84408 3.87879 3.90336 3.95388 4.05173 4.08633 4.18607 4.26349 4.34832 4.41428 4.42143 4.49460 4.58096 4.61630 4.62983 4.70820 4.75410 4.80801 4.83956 4.89314 4.92598 4.96219 5.05358 5.08396 5.10513 5.16326 5.27767 5.39271 5.41621 5.50605 5.54958 5.64537 5.70927 5.73151 6.28738 6.34052 6.38187 7.09849 7.10878 7.40670 8.18957 8.42039 9.34144 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002235 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.242939 B =12523.695370 C =13953.081349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.034 0.966 4 N -0.731 5.731 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.115 4.115 15 C 0.112 3.888 16 N -0.601 5.601 17 C 0.544 3.456 18 O -0.582 6.582 19 C -0.178 4.178 20 H 0.141 0.859 21 C -0.118 4.118 22 C -0.049 4.049 23 H 0.117 0.883 24 C 0.002 3.998 25 C -0.042 4.042 26 N -0.535 5.535 27 C 0.183 3.817 28 N -0.459 5.459 29 C 0.063 3.937 30 C 0.113 3.887 31 C -0.116 4.116 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.173 0.827 45 H 0.240 0.760 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.573 2.706 -26.418 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.053 0.947 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.793 3.207 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.206 1.206 13 C -0.100 4.100 14 C -0.154 4.154 15 C -0.010 4.010 16 N -0.332 5.332 17 C 0.333 3.667 18 O -0.464 6.464 19 C -0.199 4.199 20 H 0.159 0.841 21 C -0.156 4.156 22 C -0.069 4.069 23 H 0.135 0.865 24 C -0.113 4.113 25 C -0.189 4.189 26 N -0.253 5.253 27 C -0.099 4.099 28 N -0.141 5.141 29 C -0.078 4.078 30 C -0.009 4.009 31 C -0.154 4.154 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.190 0.810 45 H 0.256 0.744 46 H 0.110 0.890 47 H 0.133 0.867 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.885 2.701 -26.630 27.903 hybrid contribution -0.663 0.328 1.162 1.377 sum 7.221 3.029 -25.468 26.644 Atomic orbital electron populations 1.22368 0.98160 1.00779 1.00475 1.20436 0.92425 0.94741 0.85940 0.94748 1.42552 1.78286 1.10239 1.06000 1.19494 1.34392 0.93889 0.88514 0.91315 1.25404 1.03456 0.96817 1.00951 1.69780 1.52862 1.09925 1.29225 0.85363 0.77730 0.77428 0.80165 1.20928 1.22397 1.20631 1.21256 0.95289 0.99589 0.93828 1.21745 0.95682 1.00596 0.97339 1.21906 0.99340 0.97111 0.82687 1.48122 1.07298 1.60169 1.17594 1.19921 0.88489 0.76453 0.81798 1.90636 1.75829 1.46960 1.32938 1.22395 0.89576 1.02796 1.05126 0.84105 1.23221 1.01176 0.93714 0.97468 1.20022 0.92682 1.00813 0.93427 0.86488 1.20299 0.98910 1.06869 0.85261 1.22236 0.93800 1.02681 1.00216 1.70264 1.26918 1.24388 1.03756 1.25636 0.90068 0.97623 0.96587 1.45458 1.20968 1.40325 1.07315 1.22349 1.00203 1.02472 0.82740 1.21652 0.79003 1.01363 0.98882 1.21912 1.01900 0.98947 0.92691 0.95197 0.90857 0.93836 0.79433 0.94233 0.91459 0.92620 0.91750 0.90388 0.87853 0.87545 0.85615 0.80952 0.74376 0.89013 0.86708 0.89833 0.90349 0.89696 0.88988 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.14 71.98 0.66 -4.62 16 2 C 0.17 6.33 2.47 44.99 0.11 6.44 16 3 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 4 N -0.73 -34.70 4.41 -322.93 -1.42 -36.13 16 5 C -0.23 -12.42 9.93 84.03 0.83 -11.58 16 6 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 7 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 8 N -0.97 -57.68 13.06 21.65 0.28 -57.39 16 9 Si 0.96 45.69 29.55 68.60 2.03 47.72 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C -0.08 -2.30 1.79 -10.76 -0.02 -2.32 16 14 C -0.12 -3.27 5.22 30.67 0.16 -3.11 16 15 C 0.11 2.44 6.30 86.36 0.54 2.98 16 16 N -0.60 -13.76 2.97 -818.92 -2.43 -16.20 16 17 C 0.54 13.18 7.48 87.66 0.66 13.84 16 18 O -0.58 -17.48 15.67 -3.04 -0.05 -17.53 16 19 C -0.18 -3.32 4.48 -11.54 -0.05 -3.37 16 20 H 0.14 2.32 6.66 -2.39 -0.02 2.31 16 21 C -0.12 -1.90 9.76 30.62 0.30 -1.60 16 22 C -0.05 -0.88 5.53 -11.51 -0.06 -0.94 16 23 H 0.12 2.22 6.93 -2.39 -0.02 2.20 16 24 C 0.00 0.04 6.63 40.95 0.27 0.31 16 25 C -0.04 -0.89 10.94 83.53 0.91 0.02 16 26 N -0.53 -12.36 11.25 -200.31 -2.25 -14.62 16 27 C 0.18 2.91 12.56 180.26 2.26 5.18 16 28 N -0.46 -6.85 3.15 -537.90 -1.70 -8.55 16 29 C 0.06 0.44 10.96 127.77 1.40 1.84 16 30 C 0.11 2.51 6.43 86.36 0.56 3.07 16 31 C -0.12 -2.69 5.04 30.67 0.15 -2.54 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.92 6.40 -2.39 -0.02 1.91 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 19.03 7.58 -92.71 -0.70 18.32 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.23 7.41 -2.38 -0.02 2.21 16 40 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.10 1.88 5.67 -2.39 -0.01 1.87 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.13 1.69 7.94 -2.39 -0.02 1.67 16 44 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 46 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.08 0.69 7.38 -2.39 -0.02 0.67 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.08 2.00 7.01 -2.39 -0.02 1.98 16 51 H 0.09 1.89 6.36 -2.39 -0.02 1.88 16 52 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -73.15 412.65 3.83 -69.32 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.22 Total: 33.48 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 9.15 Total: -0.11 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -7.52 Total: -132.88 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.15 3.83 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753279178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.043 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds