Wall clock time and date at job start Wed Apr 1 2020 03:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47177 * 2 1 4 4 N 1.46499 * 109.47543 * 120.00265 * 2 1 3 5 5 C 1.36932 * 119.99815 * 275.00582 * 4 2 1 6 6 H 1.07997 * 120.00534 * 359.97438 * 5 4 2 7 7 C 1.38818 * 120.00108 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00247 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99612 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47011 * 89.99839 * 9 7 5 11 11 H 1.48497 * 109.47217 * 209.99931 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99962 * 9 7 5 13 13 C 1.53000 * 109.47430 * 240.00751 * 2 1 3 14 14 C 1.53040 * 109.46191 * 59.99465 * 13 2 1 15 15 C 1.53197 * 109.31333 * 181.38774 * 14 13 2 16 16 N 1.46926 * 108.77597 * 305.36980 * 15 14 13 17 17 C 1.34776 * 120.62448 * 233.58796 * 16 15 14 18 18 O 1.21629 * 119.99781 * 174.88601 * 17 16 15 19 19 C 1.47164 * 120.00298 * 354.88640 * 17 16 15 20 20 C 1.38086 * 126.93976 * 99.88717 * 19 17 16 21 21 C 1.39536 * 105.70761 * 180.02562 * 20 19 17 22 22 N 1.31073 * 107.59848 * 359.97438 * 21 20 19 23 23 N 1.28452 * 110.95964 * 359.73003 * 22 21 20 24 24 C 1.46498 * 125.19048 * 180.30742 * 23 22 21 25 25 C 1.51275 * 109.37613 * 179.97438 * 21 20 19 26 26 C 1.54371 * 105.27413 * 17.14055 * 25 21 20 27 27 C 1.50859 * 144.41456 * 0.05662 * 20 19 17 28 28 C 1.46921 * 118.73957 * 53.60585 * 16 15 14 29 29 C 1.53040 * 109.46487 * 180.02562 * 13 2 1 30 30 H 1.09004 * 109.47238 * 60.00190 * 1 2 3 31 31 H 1.08999 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47128 * 299.99380 * 1 2 3 33 33 H 0.96996 * 120.00102 * 94.99944 * 4 2 1 34 34 H 0.97003 * 119.99686 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.44288 * 300.03064 * 13 2 1 36 36 H 1.09002 * 109.49726 * 301.33708 * 14 13 2 37 37 H 1.08998 * 109.49914 * 61.44008 * 14 13 2 38 38 H 1.09004 * 109.58055 * 65.15380 * 15 14 13 39 39 H 1.09002 * 109.58351 * 185.57713 * 15 14 13 40 40 H 1.09000 * 109.47310 * 275.14974 * 24 23 22 41 41 H 1.09005 * 109.47738 * 35.15168 * 24 23 22 42 42 H 1.08995 * 109.47360 * 155.15253 * 24 23 22 43 43 H 1.09002 * 110.27740 * 136.09313 * 25 21 20 44 44 H 1.08993 * 110.28336 * 258.18886 * 25 21 20 45 45 H 1.09004 * 110.78061 * 91.95680 * 26 25 21 46 46 H 1.08997 * 110.78273 * 215.20707 * 26 25 21 47 47 H 1.08994 * 110.29978 * 281.82635 * 27 20 19 48 48 H 1.08996 * 110.30131 * 43.98097 * 27 20 19 49 49 H 1.09002 * 109.58493 * 186.60832 * 28 16 15 50 50 H 1.08994 * 109.70637 * 66.25156 * 28 16 15 51 51 H 1.08997 * 109.49802 * 298.56767 * 29 13 2 52 52 H 1.09002 * 109.49212 * 58.62423 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8925 1.0404 2.4242 7 6 2.6114 -0.6621 3.5092 8 7 2.7375 -0.0054 4.6429 9 14 3.0545 -2.4749 3.4255 10 1 4.4871 -2.6179 3.0616 11 1 2.8146 -3.1047 4.7487 12 1 2.2141 -3.1430 2.3996 13 6 2.0400 -0.7211 -1.2493 14 6 1.5297 0.0006 -2.4987 15 6 2.0135 -0.7440 -3.7470 16 7 3.4753 -0.8768 -3.6816 17 6 4.2491 -0.4581 -4.7025 18 8 5.4607 -0.4873 -4.5990 19 6 3.6283 0.0346 -5.9425 20 6 3.4397 1.3524 -6.3094 21 6 2.8165 1.3117 -7.5572 22 7 2.6604 0.0513 -7.8812 23 7 3.1274 -0.7197 -6.9660 24 6 3.1206 -2.1840 -7.0111 25 6 2.5686 2.7235 -8.0407 26 6 3.4862 3.6159 -7.1778 27 6 3.6461 2.7855 -5.8857 28 6 4.0773 -1.4752 -2.4824 29 6 3.5704 -0.7215 -1.2488 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.0609 -0.4628 5.4348 35 1 1.6760 -1.7485 -1.2493 36 1 0.4400 0.0215 -2.4871 37 1 1.9136 1.0207 -2.5119 38 1 1.5578 -1.7336 -3.7817 39 1 1.7372 -0.1807 -4.6384 40 1 2.1626 -2.5543 -6.6461 41 1 3.2713 -2.5167 -8.0381 42 1 3.9228 -2.5705 -6.3826 43 1 2.8347 2.8143 -9.0938 44 1 1.5244 2.9969 -7.8891 45 1 4.4504 3.7638 -7.6642 46 1 3.0092 4.5735 -6.9690 47 1 2.8922 3.0758 -5.1540 48 1 4.6460 2.9174 -5.4724 49 1 5.1628 -1.3944 -2.5393 50 1 3.7922 -2.5249 -2.4127 51 1 3.9345 0.3055 -1.2740 52 1 3.9337 -1.2141 -0.3468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753280436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:00 Heat of formation + Delta-G solvation = 40.489372 kcal Electronic energy + Delta-G solvation = -31639.263941 eV Core-core repulsion = 27639.891574 eV Total energy + Delta-G solvation = -3999.372367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.77727 -41.20287 -39.29105 -37.88577 -37.06423 -34.68682 -33.36700 -32.82729 -32.53350 -31.46538 -30.31378 -28.51399 -27.45570 -26.77938 -25.46539 -24.38654 -23.61112 -22.53360 -21.65819 -21.36757 -21.12736 -19.93008 -19.44168 -18.54820 -17.68457 -17.12170 -16.92556 -16.68440 -16.18901 -15.98958 -15.89483 -15.39073 -15.22234 -14.98993 -14.91138 -14.59887 -14.45323 -14.25433 -13.86362 -13.83956 -13.72819 -13.65286 -13.55287 -13.48890 -13.10926 -12.95398 -12.83557 -12.73173 -12.35381 -12.24903 -12.07237 -12.05094 -11.83290 -11.82111 -11.59636 -11.48187 -11.42206 -11.32250 -11.22105 -10.93273 -10.04633 -9.85068 -9.56770 -9.26626 -7.99354 -5.31211 0.53834 0.97129 1.37825 1.42113 1.48981 1.49585 1.54904 1.94647 2.50693 2.88975 3.17906 3.32804 3.53425 3.74432 3.78994 3.88610 3.91475 3.99844 4.08631 4.19095 4.22886 4.23231 4.28053 4.29436 4.35862 4.47811 4.51326 4.52582 4.68789 4.70744 4.74038 4.82231 4.83737 4.85940 4.87562 4.92844 5.00682 5.06314 5.08116 5.10100 5.18265 5.20834 5.26229 5.37951 5.42538 5.47784 5.51280 5.64631 5.80084 5.81606 6.11545 6.25217 6.79228 7.01341 7.12517 7.89697 8.08633 9.22840 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002663 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.224744 B =10513.144730 C =11010.383727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.032 0.968 4 N -0.748 5.748 5 C -0.220 4.220 6 H 0.051 0.949 7 C -0.069 4.069 8 N -0.989 5.989 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.246 1.246 13 C -0.081 4.081 14 C -0.119 4.119 15 C 0.113 3.887 16 N -0.588 5.588 17 C 0.595 3.405 18 O -0.568 6.568 19 C -0.022 4.022 20 C -0.200 4.200 21 C -0.002 4.002 22 N -0.283 5.283 23 N -0.274 5.274 24 C 0.082 3.918 25 C -0.024 4.024 26 C -0.106 4.106 27 C -0.050 4.050 28 C 0.116 3.884 29 C -0.120 4.120 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.365 0.635 34 H 0.255 0.745 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.047 0.953 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -1.342 -30.334 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.051 0.949 4 N -0.391 5.391 5 C -0.351 4.351 6 H 0.069 0.931 7 C -0.260 4.260 8 N -0.640 5.640 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.229 1.229 12 H -0.170 1.170 13 C -0.101 4.101 14 C -0.157 4.157 15 C -0.008 4.008 16 N -0.320 5.320 17 C 0.380 3.620 18 O -0.446 6.446 19 C -0.150 4.150 20 C -0.211 4.211 21 C -0.161 4.161 22 N -0.114 5.114 23 N -0.062 5.062 24 C -0.057 4.057 25 C -0.063 4.063 26 C -0.144 4.144 27 C -0.089 4.089 28 C -0.006 4.006 29 C -0.158 4.158 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.115 0.885 51 H 0.066 0.934 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.654 -2.107 -30.976 31.262 hybrid contribution 0.980 -0.515 1.710 2.037 sum -2.674 -2.622 -29.266 29.504 Atomic orbital electron populations 1.22331 0.97230 1.01461 1.00704 1.20416 0.92905 0.94752 0.85066 0.94944 1.42755 1.80023 1.09444 1.06907 1.18982 1.34441 0.94134 0.87544 0.93056 1.25494 1.02731 1.02553 0.95191 1.69893 1.55124 1.37751 1.01263 0.85434 0.78621 0.80887 0.76999 1.20601 1.22867 1.17039 1.21319 0.94304 1.00543 0.93903 1.21940 1.02496 0.99010 0.92300 1.21925 0.77521 1.02376 0.99027 1.48183 1.08223 1.58904 1.16656 1.17270 0.85537 0.76533 0.82610 1.90815 1.15289 1.55784 1.82708 1.20338 1.09046 0.92019 0.93584 1.21592 1.06305 0.94282 0.98941 1.23399 1.02620 0.93835 0.96242 1.72636 1.20219 1.02525 1.16014 1.46004 1.41272 1.08258 1.10692 1.22460 1.05637 0.70883 1.06733 1.20587 1.01834 0.83131 1.00760 1.22399 1.00340 0.98488 0.93142 1.20522 1.02052 0.86819 0.99465 1.21731 0.98858 0.97511 0.82491 1.21809 0.96430 1.00404 0.97153 0.90361 0.92713 0.95606 0.80142 0.93584 0.89647 0.87901 0.92254 0.88441 0.89826 0.87207 0.86908 0.89049 0.89179 0.88000 0.90572 0.87177 0.89386 0.92063 0.90460 0.88537 0.93449 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.14 71.98 0.66 -4.12 16 2 C 0.18 6.02 2.47 44.99 0.11 6.13 16 3 H 0.03 1.25 8.08 -2.38 -0.02 1.23 16 4 N -0.75 -32.73 4.21 -322.94 -1.36 -34.09 16 5 C -0.22 -12.25 10.41 84.04 0.87 -11.38 16 6 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 9 Si 0.95 44.74 27.73 68.60 1.90 46.64 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 13 C -0.08 -2.03 1.79 -10.77 -0.02 -2.05 16 14 C -0.12 -2.27 5.04 30.67 0.15 -2.11 16 15 C 0.11 1.88 6.32 86.36 0.55 2.42 16 16 N -0.59 -12.92 2.97 -823.08 -2.45 -15.37 16 17 C 0.59 15.94 6.88 86.59 0.60 16.54 16 18 O -0.57 -19.75 16.52 -4.12 -0.07 -19.81 16 19 C -0.02 -0.53 4.66 40.70 0.19 -0.34 16 20 C -0.20 -4.59 7.02 -19.54 -0.14 -4.73 16 21 C 0.00 -0.05 8.13 43.17 0.35 0.30 16 22 N -0.28 -6.38 11.91 -47.02 -0.56 -6.94 16 23 N -0.27 -5.64 3.75 -356.25 -1.34 -6.98 16 24 C 0.08 0.99 11.22 127.77 1.43 2.42 16 25 C -0.02 -0.31 6.76 30.50 0.21 -0.10 16 26 C -0.11 -1.21 7.07 31.54 0.22 -0.99 16 27 C -0.05 -0.90 6.76 30.38 0.21 -0.70 16 28 C 0.12 2.70 6.44 86.36 0.56 3.26 16 29 C -0.12 -3.32 5.22 30.67 0.16 -3.16 16 30 H 0.08 1.79 6.40 -2.39 -0.02 1.77 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.37 15.19 5.44 -92.71 -0.50 14.69 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 1.58 6.36 -2.39 -0.02 1.57 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.08 1.42 6.38 -2.39 -0.02 1.40 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.09 1.12 7.66 -2.39 -0.02 1.10 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.08 2.09 7.00 -2.39 -0.02 2.07 16 50 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.07 2.16 7.40 -2.39 -0.02 2.15 16 Total: -1.00 -79.04 405.85 3.37 -75.67 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.35 Total: 26.41 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.58 Total: -2.17 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.40 Total: -126.74 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.07 Total: -19.81 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -79.04 3.37 -75.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753280436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.160 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds