Wall clock time and date at job start Wed Apr 1 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46961 * 2 1 4 4 N 1.46496 * 109.46934 * 239.99874 * 2 1 3 5 5 C 1.36939 * 120.00359 * 85.00303 * 4 2 1 6 6 H 1.08001 * 119.99292 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00362 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99997 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00062 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46542 * 90.00167 * 9 7 5 11 11 H 1.48493 * 109.46929 * 210.00297 * 9 7 5 12 12 H 1.48491 * 109.46867 * 330.00590 * 9 7 5 13 13 C 1.52998 * 109.47054 * 119.99788 * 2 1 3 14 14 H 1.09001 * 109.49822 * 60.06952 * 13 2 1 15 15 C 1.53038 * 109.50069 * 299.99954 * 13 2 1 16 16 C 1.53034 * 109.53917 * 178.68717 * 15 13 2 17 17 C 1.53188 * 109.31732 * 61.36435 * 16 15 13 18 18 N 1.46930 * 108.77638 * 305.36631 * 17 16 15 19 19 C 1.34774 * 120.63207 * 233.63133 * 18 17 16 20 20 O 1.21599 * 120.00200 * 174.91019 * 19 18 17 21 21 C 1.47432 * 119.99894 * 354.90767 * 19 18 17 22 22 C 1.41288 * 126.41416 * 317.49624 * 21 19 18 23 23 N 1.30451 * 108.02396 * 179.97438 * 22 21 19 24 24 N 1.39938 * 108.89326 * 0.02562 * 23 22 21 25 25 C 1.46497 * 125.75224 * 179.97438 * 24 23 22 26 26 C 1.34262 * 108.49489 * 359.74624 * 24 23 22 27 27 C 1.50691 * 126.29528 * 180.24435 * 26 24 23 28 28 C 1.53000 * 117.49803 * 131.55421 * 27 26 24 29 29 C 1.53003 * 60.00138 * 252.51306 * 28 27 26 30 30 C 1.46924 * 118.73528 * 53.60584 * 18 17 16 31 31 H 1.08994 * 109.47172 * 60.00420 * 1 2 3 32 32 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47102 * 300.00074 * 1 2 3 34 34 H 0.97005 * 119.99706 * 264.99756 * 4 2 1 35 35 H 0.97000 * 120.00084 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.45698 * 58.66172 * 15 13 2 37 37 H 1.09001 * 109.44659 * 298.70143 * 15 13 2 38 38 H 1.09002 * 109.49768 * 301.40807 * 16 15 13 39 39 H 1.09004 * 109.49700 * 181.31692 * 16 15 13 40 40 H 1.08997 * 109.58611 * 65.15037 * 17 16 15 41 41 H 1.09002 * 109.58844 * 185.57707 * 17 16 15 42 42 H 1.07998 * 125.99102 * 359.97438 * 22 21 19 43 43 H 1.09007 * 109.46943 * 95.21898 * 25 24 23 44 44 H 1.09003 * 109.47430 * 215.21662 * 25 24 23 45 45 H 1.08993 * 109.47262 * 335.22045 * 25 24 23 46 46 H 1.09000 * 115.55503 * 277.26829 * 27 26 24 47 47 H 1.08992 * 117.50073 * 0.02562 * 28 27 26 48 48 H 1.09008 * 117.49719 * 145.02283 * 28 27 26 49 49 H 1.09001 * 117.49933 * 252.50995 * 29 28 27 50 50 H 1.08992 * 117.49659 * 107.49017 * 29 28 27 51 51 H 1.09000 * 109.58310 * 186.60668 * 30 18 17 52 52 H 1.08995 * 109.70617 * 66.25245 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4243 7 6 2.6113 -0.6621 -3.5093 8 7 2.7365 -0.0056 -4.6432 9 14 3.0554 -2.4746 -3.4254 10 1 1.8579 -3.2928 -3.7442 11 1 4.1304 -2.7667 -4.4073 12 1 3.5309 -2.8049 -2.0580 13 6 2.0400 -0.7212 1.2493 14 1 1.6779 -1.7493 1.2491 15 6 1.5302 -0.0002 2.4992 16 6 2.0127 -0.7397 3.7492 17 6 3.5442 -0.7368 3.7802 18 7 4.0439 -1.2970 2.5171 19 6 4.9181 -2.3227 2.5191 20 8 5.2531 -2.8381 1.4699 21 6 5.4684 -2.8199 3.7933 22 6 5.9172 -2.0324 4.8771 23 7 6.3295 -2.8373 5.8173 24 7 6.1672 -4.1586 5.3861 25 6 6.5127 -5.3579 6.1532 26 6 5.6366 -4.1420 4.1529 27 6 5.2913 -5.3454 3.3141 28 6 3.9066 -5.3796 2.6641 29 6 4.2181 -6.2953 3.8497 30 6 3.5720 -0.7180 1.2519 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0598 -0.4629 -5.4352 36 1 0.4405 0.0205 2.4874 37 1 1.9127 1.0204 2.5108 38 1 1.6512 -1.7678 3.7259 39 1 1.6298 -0.2391 4.6385 40 1 3.9054 0.2852 3.8948 41 1 3.8941 -1.3458 4.6138 42 1 5.9187 -0.9533 4.9198 43 1 5.6275 -5.7241 6.6734 44 1 6.8810 -6.1287 5.4762 45 1 7.2865 -5.1134 6.8808 46 1 6.1197 -5.7843 2.7580 47 1 3.2457 -4.5316 2.8429 48 1 3.8239 -5.8409 1.6800 49 1 4.3402 -7.3590 3.6455 50 1 3.7618 -6.0498 4.8086 51 1 3.9401 -1.3147 0.4173 52 1 3.9354 0.3053 1.1578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753801326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:57 Heat of formation + Delta-G solvation = 83.881722 kcal Electronic energy + Delta-G solvation = -32057.778756 eV Core-core repulsion = 28060.288022 eV Total energy + Delta-G solvation = -3997.490734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.81829 -39.72938 -37.68170 -37.25373 -35.49390 -33.71264 -32.80679 -31.74368 -30.61832 -30.03330 -28.65418 -27.30644 -25.48348 -24.21910 -23.40942 -22.89205 -22.76971 -21.86151 -20.88825 -20.18461 -19.71017 -18.69260 -17.66143 -17.21427 -16.77435 -15.80882 -15.72153 -15.28958 -14.98015 -14.78900 -14.71666 -14.41311 -14.06199 -14.02464 -13.78175 -13.40928 -13.09780 -12.94472 -12.90499 -12.88590 -12.70788 -12.36676 -12.19373 -12.10554 -11.81956 -11.52643 -11.38559 -11.14378 -11.05157 -10.93132 -10.91394 -10.73810 -10.57027 -10.54009 -10.24984 -10.04148 -9.84391 -9.66623 -9.56345 -9.47460 -8.85918 -8.75797 -8.36524 -7.18024 -5.68687 -3.03613 1.36588 2.03721 2.08485 3.05087 3.35413 3.41129 3.47869 3.55587 3.57493 4.04054 4.18564 4.52648 4.59110 4.69587 4.70211 4.71461 4.80435 4.85150 4.89506 4.95733 5.00018 5.04680 5.21902 5.25512 5.28709 5.33812 5.47108 5.51968 5.59406 5.63590 5.67968 5.70666 5.76601 5.80214 5.86562 5.91716 5.98668 6.11278 6.12280 6.16152 6.21145 6.39330 6.41588 6.50884 6.54966 6.61613 6.78030 6.88711 7.06851 7.31218 7.62328 8.07503 8.43950 8.50583 9.29629 10.02788 10.22334 11.49686 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.003479 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.278028 B = 8046.394552 C = 9205.056784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.055 0.945 4 N -0.748 5.748 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.006 3.994 8 N -0.936 5.936 9 Si 0.877 3.123 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.270 1.270 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.104 3.896 18 N -0.607 5.607 19 C 0.591 3.409 20 O -0.529 6.529 21 C -0.277 4.277 22 C 0.080 3.920 23 N -0.298 5.298 24 N -0.360 5.360 25 C 0.099 3.901 26 C 0.173 3.827 27 C -0.105 4.105 28 C -0.138 4.138 29 C -0.174 4.174 30 C 0.123 3.877 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.361 0.639 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.190 0.810 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -9.515 26.895 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.073 0.927 4 N -0.391 5.391 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.190 4.190 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.196 1.196 13 C -0.126 4.126 14 H 0.086 0.914 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.020 4.020 18 N -0.340 5.340 19 C 0.379 3.621 20 O -0.406 6.406 21 C -0.291 4.291 22 C -0.107 4.107 23 N -0.117 5.117 24 N -0.139 5.139 25 C -0.042 4.042 26 C 0.042 3.958 27 C -0.125 4.125 28 C -0.176 4.176 29 C -0.211 4.211 30 C 0.001 3.999 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.194 0.806 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.207 0.793 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.147 0.853 47 H 0.114 0.886 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.111 0.889 51 H 0.119 0.881 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.707 -9.807 27.423 29.359 hybrid contribution 0.023 -1.126 -0.813 1.389 sum 3.731 -10.934 26.611 29.010 Atomic orbital electron populations 1.22449 0.98864 1.00775 1.00391 1.20146 0.91945 0.95562 0.84816 0.92660 1.42824 1.79639 1.09550 1.07126 1.19035 1.36805 0.95502 0.85559 0.89278 1.24631 1.01413 0.97377 0.95571 1.69700 1.52886 1.35565 1.00251 0.86631 0.77989 0.86980 0.77647 1.21331 1.21869 1.19579 1.21795 0.94896 1.00364 0.95499 0.91369 1.21615 1.01031 0.99161 0.93386 1.21905 0.95104 1.01321 0.98727 1.21866 0.94588 0.99023 0.86491 1.47996 1.44207 1.34213 1.07609 1.17256 0.78427 0.79130 0.87321 1.90817 1.59936 1.57112 1.32698 1.20002 1.18327 0.91957 0.98863 1.24019 0.96647 1.00041 0.89966 1.77183 1.24988 0.86259 1.23286 1.48252 1.47563 1.06162 1.11935 1.21933 1.02401 0.83125 0.96723 1.20433 0.94662 0.94681 0.86018 1.20461 0.95239 0.94729 1.02084 1.22902 0.95489 1.01551 0.97626 1.23098 1.01719 0.97148 0.99166 1.21675 0.93749 0.99054 0.85410 0.92430 0.93762 0.93972 0.80570 0.93180 0.91189 0.91652 0.91871 0.91061 0.91457 0.89798 0.79277 0.90444 0.89290 0.88856 0.85308 0.88560 0.87464 0.87793 0.88854 0.88079 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.14 37.16 0.34 -2.47 16 2 C 0.19 3.44 2.47 -67.93 -0.17 3.27 16 3 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.75 -17.64 4.33 -53.43 -0.23 -17.88 16 5 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 9 Si 0.88 23.06 27.74 -169.99 -4.71 18.35 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 13 C -0.11 -1.61 1.97 -90.50 -0.18 -1.79 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.11 -1.32 4.85 -26.69 -0.13 -1.45 16 16 C -0.13 -1.30 6.08 -26.62 -0.16 -1.46 16 17 C 0.10 1.07 5.57 -3.71 -0.02 1.05 16 18 N -0.61 -8.56 2.97 -174.03 -0.52 -9.08 16 19 C 0.59 9.36 6.50 -12.52 -0.08 9.28 16 20 O -0.53 -10.57 15.73 5.28 0.08 -10.49 16 21 C -0.28 -3.65 5.10 -105.07 -0.54 -4.18 16 22 C 0.08 0.90 9.66 -16.98 -0.16 0.74 16 23 N -0.30 -3.45 12.50 30.86 0.39 -3.06 16 24 N -0.36 -3.67 3.98 -63.34 -0.25 -3.92 16 25 C 0.10 0.57 11.11 59.85 0.67 1.23 16 26 C 0.17 2.03 6.44 -81.60 -0.53 1.50 16 27 C -0.11 -1.09 5.23 -91.77 -0.48 -1.57 16 28 C -0.14 -1.51 9.18 -26.73 -0.25 -1.76 16 29 C -0.17 -1.34 10.17 -26.73 -0.27 -1.61 16 30 C 0.12 2.03 5.48 -3.71 -0.02 2.01 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 34 H 0.36 8.67 5.48 -40.82 -0.22 8.44 16 35 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 36 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.80 4.87 -51.93 -0.25 0.54 16 42 H 0.19 1.63 7.52 -52.49 -0.39 1.24 16 43 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.09 0.38 7.92 -51.93 -0.41 -0.04 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.10 1.20 7.77 -51.93 -0.40 0.79 16 48 H 0.11 1.20 8.14 -51.92 -0.42 0.77 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 2.09 6.51 -51.93 -0.34 1.75 16 52 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 408.10 15.07 6.15 6.15 Total: -1.00 -35.83 408.10 -9.17 -45.00 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.62 Total: 8.12 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.23 Total: -4.03 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.16 Total: -63.09 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.83 -9.17 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.880 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds