Wall clock time and date at job start Wed Apr 1 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46961 * 2 1 4 4 N 1.46496 * 109.46934 * 239.99874 * 2 1 3 5 5 C 1.36939 * 120.00359 * 85.00303 * 4 2 1 6 6 H 1.08001 * 119.99292 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00362 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99997 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00062 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46542 * 90.00167 * 9 7 5 11 11 H 1.48493 * 109.46929 * 210.00297 * 9 7 5 12 12 H 1.48491 * 109.46867 * 330.00590 * 9 7 5 13 13 C 1.52998 * 109.47054 * 119.99788 * 2 1 3 14 14 H 1.09001 * 109.49822 * 60.06952 * 13 2 1 15 15 C 1.53038 * 109.50069 * 299.99954 * 13 2 1 16 16 C 1.53034 * 109.53917 * 178.68717 * 15 13 2 17 17 C 1.53188 * 109.31732 * 61.36435 * 16 15 13 18 18 N 1.46930 * 108.77638 * 305.36631 * 17 16 15 19 19 C 1.34774 * 120.63207 * 233.63133 * 18 17 16 20 20 O 1.21599 * 120.00200 * 174.91019 * 19 18 17 21 21 C 1.47432 * 119.99894 * 354.90767 * 19 18 17 22 22 C 1.41288 * 126.41416 * 317.49624 * 21 19 18 23 23 N 1.30451 * 108.02396 * 179.97438 * 22 21 19 24 24 N 1.39938 * 108.89326 * 0.02562 * 23 22 21 25 25 C 1.46497 * 125.75224 * 179.97438 * 24 23 22 26 26 C 1.34262 * 108.49489 * 359.74624 * 24 23 22 27 27 C 1.50691 * 126.29528 * 180.24435 * 26 24 23 28 28 C 1.53000 * 117.49803 * 131.55421 * 27 26 24 29 29 C 1.53003 * 60.00138 * 252.51306 * 28 27 26 30 30 C 1.46924 * 118.73528 * 53.60584 * 18 17 16 31 31 H 1.08994 * 109.47172 * 60.00420 * 1 2 3 32 32 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47102 * 300.00074 * 1 2 3 34 34 H 0.97005 * 119.99706 * 264.99756 * 4 2 1 35 35 H 0.97000 * 120.00084 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.45698 * 58.66172 * 15 13 2 37 37 H 1.09001 * 109.44659 * 298.70143 * 15 13 2 38 38 H 1.09002 * 109.49768 * 301.40807 * 16 15 13 39 39 H 1.09004 * 109.49700 * 181.31692 * 16 15 13 40 40 H 1.08997 * 109.58611 * 65.15037 * 17 16 15 41 41 H 1.09002 * 109.58844 * 185.57707 * 17 16 15 42 42 H 1.07998 * 125.99102 * 359.97438 * 22 21 19 43 43 H 1.09007 * 109.46943 * 95.21898 * 25 24 23 44 44 H 1.09003 * 109.47430 * 215.21662 * 25 24 23 45 45 H 1.08993 * 109.47262 * 335.22045 * 25 24 23 46 46 H 1.09000 * 115.55503 * 277.26829 * 27 26 24 47 47 H 1.08992 * 117.50073 * 0.02562 * 28 27 26 48 48 H 1.09008 * 117.49719 * 145.02283 * 28 27 26 49 49 H 1.09001 * 117.49933 * 252.50995 * 29 28 27 50 50 H 1.08992 * 117.49659 * 107.49017 * 29 28 27 51 51 H 1.09000 * 109.58310 * 186.60668 * 30 18 17 52 52 H 1.08995 * 109.70617 * 66.25245 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4243 7 6 2.6113 -0.6621 -3.5093 8 7 2.7365 -0.0056 -4.6432 9 14 3.0554 -2.4746 -3.4254 10 1 1.8579 -3.2928 -3.7442 11 1 4.1304 -2.7667 -4.4073 12 1 3.5309 -2.8049 -2.0580 13 6 2.0400 -0.7212 1.2493 14 1 1.6779 -1.7493 1.2491 15 6 1.5302 -0.0002 2.4992 16 6 2.0127 -0.7397 3.7492 17 6 3.5442 -0.7368 3.7802 18 7 4.0439 -1.2970 2.5171 19 6 4.9181 -2.3227 2.5191 20 8 5.2531 -2.8381 1.4699 21 6 5.4684 -2.8199 3.7933 22 6 5.9172 -2.0324 4.8771 23 7 6.3295 -2.8373 5.8173 24 7 6.1672 -4.1586 5.3861 25 6 6.5127 -5.3579 6.1532 26 6 5.6366 -4.1420 4.1529 27 6 5.2913 -5.3454 3.3141 28 6 3.9066 -5.3796 2.6641 29 6 4.2181 -6.2953 3.8497 30 6 3.5720 -0.7180 1.2519 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 3.0598 -0.4629 -5.4352 36 1 0.4405 0.0205 2.4874 37 1 1.9127 1.0204 2.5108 38 1 1.6512 -1.7678 3.7259 39 1 1.6298 -0.2391 4.6385 40 1 3.9054 0.2852 3.8948 41 1 3.8941 -1.3458 4.6138 42 1 5.9187 -0.9533 4.9198 43 1 5.6275 -5.7241 6.6734 44 1 6.8810 -6.1287 5.4762 45 1 7.2865 -5.1134 6.8808 46 1 6.1197 -5.7843 2.7580 47 1 3.2457 -4.5316 2.8429 48 1 3.8239 -5.8409 1.6800 49 1 4.3402 -7.3590 3.6455 50 1 3.7618 -6.0498 4.8086 51 1 3.9401 -1.3147 0.4173 52 1 3.9354 0.3053 1.1578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753801326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:55 Heat of formation + Delta-G solvation = 60.510810 kcal Electronic energy + Delta-G solvation = -32058.792195 eV Core-core repulsion = 28060.288022 eV Total energy + Delta-G solvation = -3998.504172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.67683 -40.87134 -38.96366 -38.06332 -36.99063 -34.78820 -34.20839 -33.19972 -31.87471 -31.27596 -30.07971 -28.06434 -26.61753 -25.67154 -24.58052 -24.08909 -23.58667 -22.84946 -21.96360 -21.37845 -20.97708 -19.65831 -19.55851 -18.33262 -17.66491 -16.91189 -16.71679 -16.56865 -16.23335 -15.99692 -15.83055 -15.49525 -15.33487 -14.99271 -14.83046 -14.78233 -14.39288 -14.29255 -14.18449 -13.88598 -13.66713 -13.49049 -13.42650 -13.18674 -13.01346 -12.85506 -12.57316 -12.53499 -12.35400 -12.23141 -12.16747 -11.90504 -11.83193 -11.70675 -11.66687 -11.36600 -11.30878 -11.22777 -11.00616 -10.82063 -10.38464 -9.73625 -9.46989 -9.27206 -8.02043 -5.32022 0.49249 1.15414 1.33232 1.34068 1.38476 1.44899 1.95914 2.26272 2.46997 2.65679 3.29352 3.30780 3.43323 3.54700 3.76976 3.81390 3.84569 3.89366 3.98247 4.10963 4.15330 4.18209 4.21528 4.32266 4.39029 4.45222 4.51312 4.60571 4.63066 4.66778 4.67309 4.69053 4.80394 4.83976 4.88037 4.94650 4.95874 4.99217 5.03495 5.07220 5.11007 5.17987 5.28029 5.33610 5.38157 5.53468 5.59310 5.66115 5.80520 5.81923 6.23709 6.46486 6.52929 7.09844 7.26879 7.88600 8.04859 9.19941 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.003479 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.278028 B = 8046.394552 C = 9205.056784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.049 0.951 4 N -0.753 5.753 5 C -0.214 4.214 6 H 0.064 0.936 7 C -0.060 4.060 8 N -0.983 5.983 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.058 0.942 15 C -0.108 4.108 16 C -0.125 4.125 17 C 0.099 3.901 18 N -0.603 5.603 19 C 0.589 3.411 20 O -0.585 6.585 21 C -0.304 4.304 22 C 0.085 3.915 23 N -0.310 5.310 24 N -0.353 5.353 25 C 0.086 3.914 26 C 0.174 3.826 27 C -0.116 4.116 28 C -0.164 4.164 29 C -0.132 4.132 30 C 0.127 3.873 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.359 0.641 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.212 0.788 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.129 0.871 50 H 0.105 0.895 51 H 0.053 0.947 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -10.738 31.349 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.067 0.933 4 N -0.396 5.396 5 C -0.345 4.345 6 H 0.082 0.918 7 C -0.251 4.251 8 N -0.635 5.635 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.192 1.192 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.023 4.023 18 N -0.334 5.334 19 C 0.378 3.622 20 O -0.465 6.465 21 C -0.319 4.319 22 C -0.102 4.102 23 N -0.130 5.130 24 N -0.132 5.132 25 C -0.053 4.053 26 C 0.040 3.960 27 C -0.136 4.136 28 C -0.202 4.202 29 C -0.169 4.169 30 C 0.005 3.995 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.228 0.772 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.147 0.853 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.147 0.853 50 H 0.124 0.876 51 H 0.072 0.928 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.056 -11.021 31.995 33.978 hybrid contribution 0.220 -0.687 -2.096 2.217 sum 3.276 -11.708 29.899 32.276 Atomic orbital electron populations 1.22305 0.96925 1.01090 1.01143 1.20450 0.93188 0.95139 0.84334 0.93314 1.42921 1.79828 1.09490 1.07371 1.19036 1.33961 0.94500 0.86997 0.91845 1.25294 1.02956 1.01363 0.95531 1.69848 1.55373 1.37245 1.01035 0.85601 0.77609 0.82420 0.77340 1.20335 1.22606 1.19186 1.21634 0.93776 0.99885 0.95843 0.92380 1.21609 1.01805 0.99322 0.91884 1.21886 0.94329 1.01081 0.99003 1.22181 0.95200 1.00151 0.84741 1.48035 1.43608 1.33713 1.08083 1.17696 0.78044 0.78804 0.87641 1.90777 1.61948 1.58994 1.34800 1.19890 1.20406 0.93235 0.98361 1.24299 0.95874 1.01015 0.88963 1.77152 1.25313 0.86977 1.23564 1.48586 1.46229 1.06807 1.11532 1.22360 1.03841 0.81938 0.97138 1.20601 0.94092 0.94622 0.86644 1.20510 0.95151 0.95378 1.02577 1.22803 0.96135 1.02483 0.98782 1.23188 0.98191 0.97640 0.97852 1.21392 0.94672 0.97990 0.85492 0.94973 0.93644 0.89896 0.80798 0.93551 0.89781 0.90569 0.92583 0.87550 0.89315 0.88545 0.77185 0.88333 0.87630 0.87826 0.85321 0.90625 0.88558 0.85256 0.87633 0.92817 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.14 71.98 0.66 -4.41 16 2 C 0.18 6.53 2.47 44.99 0.11 6.64 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 4 N -0.75 -36.33 4.33 -322.95 -1.40 -37.73 16 5 C -0.21 -12.46 10.41 84.03 0.87 -11.59 16 6 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 8 N -0.98 -65.24 13.97 21.65 0.30 -64.93 16 9 Si 0.94 49.66 27.74 68.60 1.90 51.56 16 10 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 11 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 12 H -0.27 -13.73 6.52 99.48 0.65 -13.08 16 13 C -0.09 -2.73 1.97 -10.71 -0.02 -2.75 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.11 -2.17 4.85 30.62 0.15 -2.02 16 16 C -0.12 -1.99 6.08 30.67 0.19 -1.80 16 17 C 0.10 1.77 5.57 86.36 0.48 2.25 16 18 N -0.60 -16.81 2.97 -822.78 -2.45 -19.26 16 19 C 0.59 19.05 6.50 86.67 0.56 19.61 16 20 O -0.58 -24.69 15.73 -4.03 -0.06 -24.76 16 21 C -0.30 -7.81 5.10 -20.15 -0.10 -7.91 16 22 C 0.08 1.75 9.66 85.65 0.83 2.58 16 23 N -0.31 -6.48 12.50 -56.28 -0.70 -7.18 16 24 N -0.35 -6.37 3.98 -354.32 -1.41 -7.78 16 25 C 0.09 0.71 11.11 127.77 1.42 2.13 16 26 C 0.17 3.85 6.44 42.14 0.27 4.12 16 27 C -0.12 -2.29 5.23 -11.54 -0.06 -2.35 16 28 C -0.16 -3.61 9.18 30.60 0.28 -3.33 16 29 C -0.13 -1.69 10.17 30.60 0.31 -1.38 16 30 C 0.13 4.30 5.48 86.37 0.47 4.78 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 2.04 6.40 -2.38 -0.02 2.02 16 34 H 0.36 17.64 5.48 -92.70 -0.51 17.13 16 35 H 0.26 16.27 8.31 -92.71 -0.77 15.49 16 36 H 0.08 1.50 6.36 -2.39 -0.02 1.48 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.55 4.87 -2.39 -0.01 1.54 16 42 H 0.21 3.11 7.52 -2.91 -0.02 3.09 16 43 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.11 0.54 7.92 -2.39 -0.02 0.52 16 45 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.08 1.95 7.77 -2.39 -0.02 1.93 16 48 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 49 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 2.34 6.51 -2.39 -0.02 2.33 16 52 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -83.29 408.10 3.43 -79.87 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.35 Total: 28.87 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.89 Total: 1.34 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -5.65 Total: -136.89 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.90 Total: 51.56 kcal Total: -83.29 3.43 -79.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.378 kcal (2) G-P(sol) polarization free energy of solvation -83.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds