Wall clock time and date at job start Wed Apr 1 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 N 1.46496 * 109.47650 * 239.99732 * 2 1 3 5 5 C 1.36936 * 120.00159 * 84.99619 * 4 2 1 6 6 H 1.07998 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47070 * 90.00164 * 9 7 5 11 11 H 1.48505 * 109.47086 * 209.99894 * 9 7 5 12 12 H 1.48492 * 109.47225 * 330.00056 * 9 7 5 13 13 C 1.53008 * 109.47038 * 119.99255 * 2 1 3 14 14 H 1.08999 * 109.52086 * 180.08151 * 13 2 1 15 15 C 1.53034 * 109.49824 * 300.16778 * 13 2 1 16 16 C 1.53039 * 109.53546 * 181.31370 * 15 13 2 17 17 C 1.53186 * 109.31553 * 298.63420 * 16 15 13 18 18 N 1.47207 * 108.85629 * 54.64865 * 17 16 15 19 19 C 1.34771 * 120.81086 * 126.34220 * 18 17 16 20 20 O 1.21607 * 119.99833 * 176.60999 * 19 18 17 21 21 C 1.47428 * 120.00591 * 356.61800 * 19 18 17 22 22 C 1.41295 * 126.41321 * 29.37488 * 21 19 18 23 23 N 1.30444 * 108.02011 * 179.97438 * 22 21 19 24 24 N 1.39940 * 108.90095 * 0.02562 * 23 22 21 25 25 C 1.46500 * 125.75227 * 180.02562 * 24 23 22 26 26 C 1.34255 * 108.48849 * 359.74695 * 24 23 22 27 27 C 1.50696 * 126.29152 * 180.24366 * 26 24 23 28 28 C 1.53004 * 117.49846 * 311.13974 * 27 26 24 29 29 C 1.53002 * 117.49954 * 242.48295 * 27 26 24 30 30 C 1.46924 * 118.55577 * 306.48391 * 18 17 16 31 31 H 1.08995 * 109.47165 * 60.00452 * 1 2 3 32 32 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47495 * 300.00563 * 1 2 3 34 34 H 0.96997 * 119.99773 * 265.00710 * 4 2 1 35 35 H 0.96996 * 120.00166 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.45992 * 301.33015 * 15 13 2 37 37 H 1.09001 * 109.46161 * 61.29595 * 15 13 2 38 38 H 1.08997 * 109.50016 * 58.58652 * 16 15 13 39 39 H 1.09000 * 109.49993 * 178.64895 * 16 15 13 40 40 H 1.09000 * 109.58765 * 174.42615 * 17 16 15 41 41 H 1.09004 * 109.58419 * 294.70460 * 17 16 15 42 42 H 1.07993 * 125.98691 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.47252 * 95.28489 * 25 24 23 44 44 H 1.08999 * 109.46531 * 215.28014 * 25 24 23 45 45 H 1.08997 * 109.47559 * 335.27898 * 25 24 23 46 46 H 1.09002 * 115.55415 * 96.81335 * 27 26 24 47 47 H 1.09004 * 117.49894 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49784 * 145.02114 * 28 27 26 49 49 H 1.09001 * 117.50023 * 214.97800 * 29 27 26 50 50 H 1.08998 * 117.49931 * 359.97438 * 29 27 26 51 51 H 1.09002 * 109.58395 * 293.68036 * 30 18 17 52 52 H 1.08993 * 109.58828 * 173.39739 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4241 7 6 2.6115 -0.6621 -3.5091 8 7 2.9237 -1.9394 -3.4502 9 14 2.7905 0.2699 -5.1181 10 1 4.1532 0.8540 -5.2028 11 1 2.5796 -0.6613 -6.2556 12 1 1.7813 1.3576 -5.1751 13 6 2.0399 -0.7211 1.2494 14 1 3.1299 -0.7203 1.2510 15 6 1.5267 -0.0025 2.4992 16 6 2.0631 -0.7037 3.7493 17 6 1.5532 -2.1479 3.7784 18 7 1.9181 -2.8068 2.5136 19 6 2.5962 -3.9715 2.5126 20 8 2.8363 -4.5343 1.4617 21 6 3.0469 -4.5633 3.7854 22 6 2.4217 -4.4209 5.0445 23 7 3.1189 -5.0916 5.9194 24 7 4.2078 -5.6861 5.2719 25 6 5.2284 -6.5235 5.9069 26 6 4.1558 -5.3647 3.9694 27 6 5.1307 -5.7966 2.9045 28 6 6.6219 -5.6218 3.1990 29 6 5.9276 -4.7029 2.1907 30 6 1.5297 -2.1656 1.2500 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6318 -1.1524 35 1 3.2464 -2.3969 -4.2423 36 1 1.8681 1.0327 2.4889 37 1 0.4370 -0.0253 2.5095 38 1 3.1529 -0.7031 3.7275 39 1 1.7169 -0.1772 4.6387 40 1 2.0109 -2.6803 4.6121 41 1 0.4693 -2.1504 3.8941 42 1 1.5236 -3.8563 5.2468 43 1 4.9591 -7.5736 5.7934 44 1 6.1931 -6.3425 5.4330 45 1 5.2924 -6.2774 6.9668 46 1 4.8320 -6.6656 2.3182 47 1 6.8978 -5.1939 4.1628 48 1 7.3042 -6.3755 2.8061 49 1 6.1535 -4.8525 1.1349 50 1 5.7465 -3.6709 2.4910 51 1 0.4436 -2.1695 1.1571 52 1 1.9698 -2.7090 0.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753801327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:05 Heat of formation + Delta-G solvation = 97.247903 kcal Electronic energy + Delta-G solvation = -31890.436529 eV Core-core repulsion = 27893.525397 eV Total energy + Delta-G solvation = -3996.911132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79057 -39.66647 -37.58247 -37.19412 -35.34576 -33.65848 -32.71829 -31.74728 -30.44351 -29.74011 -28.08341 -27.16339 -25.53479 -24.36360 -23.46883 -23.16547 -22.74867 -21.84232 -20.95312 -20.53355 -18.91368 -18.45586 -17.39612 -16.92839 -16.64859 -15.71526 -15.59376 -15.27418 -14.88687 -14.79128 -14.62076 -14.42457 -14.17712 -13.79945 -13.67778 -13.47330 -13.12102 -13.00420 -12.77766 -12.60715 -12.56031 -12.29949 -12.13250 -11.76629 -11.65391 -11.46735 -11.32314 -10.95154 -10.88810 -10.79295 -10.74008 -10.51694 -10.43188 -10.36495 -10.17265 -10.12128 -9.80089 -9.57682 -9.50125 -9.38000 -8.82649 -8.70577 -8.21656 -6.86180 -5.65780 -2.95080 1.43114 2.08208 2.10883 3.19939 3.48933 3.51422 3.53767 3.54852 3.55774 4.11819 4.24844 4.58917 4.65307 4.71101 4.78836 4.81179 4.84957 4.94332 5.00207 5.03986 5.08421 5.17086 5.27880 5.34296 5.37370 5.46442 5.50769 5.64046 5.69905 5.76557 5.79496 5.87171 5.91560 5.94773 5.97616 6.01509 6.06423 6.15395 6.23052 6.23767 6.34488 6.46222 6.53620 6.62024 6.68753 6.77412 6.91056 6.98010 7.21448 7.36424 7.74127 7.78504 8.51964 8.56998 9.62825 10.21793 10.55991 11.56261 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003146 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.995096 B = 8899.435797 C =10504.865892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.071 0.929 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.084 3.916 18 N -0.605 5.605 19 C 0.590 3.410 20 O -0.528 6.528 21 C -0.277 4.277 22 C 0.067 3.933 23 N -0.299 5.299 24 N -0.359 5.359 25 C 0.092 3.908 26 C 0.180 3.820 27 C -0.099 4.099 28 C -0.184 4.184 29 C -0.135 4.135 30 C 0.119 3.881 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.201 0.799 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.133 0.867 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -6.245 23.129 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.122 4.122 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.039 4.039 18 N -0.339 5.339 19 C 0.378 3.622 20 O -0.404 6.404 21 C -0.292 4.292 22 C -0.119 4.119 23 N -0.119 5.119 24 N -0.139 5.139 25 C -0.049 4.049 26 C 0.048 3.952 27 C -0.119 4.119 28 C -0.221 4.221 29 C -0.173 4.173 30 C -0.002 4.002 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.217 0.783 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.150 0.850 47 H 0.111 0.889 48 H 0.123 0.877 49 H 0.128 0.872 50 H 0.114 0.886 51 H 0.086 0.914 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.444 -6.887 23.733 24.951 hybrid contribution -0.055 0.485 -1.650 1.721 sum 3.389 -6.402 22.083 23.240 Atomic orbital electron populations 1.22570 0.99573 1.00884 0.99883 1.20166 0.91789 0.95212 0.85846 0.93459 1.42519 1.78097 1.10848 1.05281 1.19213 1.36521 0.93771 0.87416 0.91332 1.24736 1.02355 0.95934 0.97932 1.69678 1.50786 1.08494 1.28737 0.86246 0.77679 0.78582 0.84009 1.21868 1.21872 1.20887 1.21760 1.00833 0.94456 0.95193 0.91013 1.21622 1.00842 0.99083 0.93684 1.21899 1.01321 0.95230 0.98642 1.22416 1.00108 0.94046 0.87354 1.47960 1.56528 1.21946 1.07431 1.17200 0.77463 0.80269 0.87309 1.90827 1.56260 1.60923 1.32431 1.20025 1.01842 1.11985 0.95353 1.24349 1.00013 0.97445 0.90085 1.77182 0.98396 1.14961 1.21332 1.48272 1.21328 1.39066 1.05185 1.22076 0.89086 0.93897 0.99803 1.20471 0.95638 0.94128 0.84967 1.20483 0.89537 1.03587 0.98304 1.23185 0.93482 1.04167 1.01294 1.22931 0.99934 0.95637 0.98748 1.21765 0.99710 0.93044 0.85702 0.92985 0.93265 0.94274 0.77979 0.93574 0.91841 0.91453 0.91763 0.91171 0.88377 0.91437 0.78262 0.90327 0.88904 0.88919 0.84965 0.88884 0.87693 0.87183 0.88591 0.91412 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.79 37.15 0.33 -2.69 16 2 C 0.18 3.56 2.72 -67.93 -0.19 3.37 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.39 5.04 -53.43 -0.27 -18.66 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 9 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.10 -1.70 2.33 -90.50 -0.21 -1.91 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.11 -1.44 4.77 -26.69 -0.13 -1.57 16 16 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 17 C 0.08 0.91 5.58 -3.56 -0.02 0.89 16 18 N -0.61 -9.03 2.98 -173.81 -0.52 -9.55 16 19 C 0.59 9.81 7.57 -12.52 -0.09 9.72 16 20 O -0.53 -10.84 15.49 5.27 0.08 -10.76 16 21 C -0.28 -3.85 5.72 -105.06 -0.60 -4.45 16 22 C 0.07 0.78 9.73 -16.98 -0.17 0.61 16 23 N -0.30 -3.59 12.50 30.86 0.39 -3.20 16 24 N -0.36 -3.90 3.98 -63.34 -0.25 -4.15 16 25 C 0.09 0.59 11.16 59.85 0.67 1.26 16 26 C 0.18 2.26 6.43 -81.60 -0.53 1.73 16 27 C -0.10 -1.13 5.06 -91.77 -0.46 -1.60 16 28 C -0.18 -1.56 8.92 -26.69 -0.24 -1.80 16 29 C -0.13 -1.62 10.06 -26.69 -0.27 -1.88 16 30 C 0.12 2.06 5.20 -3.71 -0.02 2.04 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.89 6.32 -51.93 -0.33 0.56 16 33 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 34 H 0.39 10.54 6.16 -40.82 -0.25 10.29 16 35 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.80 6.50 -51.93 -0.34 0.47 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.94 3.22 -51.93 -0.17 0.77 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.20 1.72 5.92 -52.49 -0.31 1.41 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.45 5.26 -51.93 -0.27 0.18 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.09 0.69 6.81 -51.93 -0.35 0.34 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 50 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.07 1.13 6.18 -51.93 -0.32 0.81 16 52 H 0.10 2.16 5.60 -51.93 -0.29 1.87 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -35.06 399.86 -9.19 -44.24 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -8.01 Total: 11.51 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.33 Total: -5.17 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.07 Total: -63.64 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.06 -9.19 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.490 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds