Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 N 1.46496 * 109.47650 * 239.99732 * 2 1 3 5 5 C 1.36936 * 120.00159 * 84.99619 * 4 2 1 6 6 H 1.07998 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47070 * 90.00164 * 9 7 5 11 11 H 1.48505 * 109.47086 * 209.99894 * 9 7 5 12 12 H 1.48492 * 109.47225 * 330.00056 * 9 7 5 13 13 C 1.53008 * 109.47038 * 119.99255 * 2 1 3 14 14 H 1.08999 * 109.52086 * 180.08151 * 13 2 1 15 15 C 1.53034 * 109.49824 * 300.16778 * 13 2 1 16 16 C 1.53039 * 109.53546 * 181.31370 * 15 13 2 17 17 C 1.53186 * 109.31553 * 298.63420 * 16 15 13 18 18 N 1.47207 * 108.85629 * 54.64865 * 17 16 15 19 19 C 1.34771 * 120.81086 * 126.34220 * 18 17 16 20 20 O 1.21607 * 119.99833 * 176.60999 * 19 18 17 21 21 C 1.47428 * 120.00591 * 356.61800 * 19 18 17 22 22 C 1.41295 * 126.41321 * 29.37488 * 21 19 18 23 23 N 1.30444 * 108.02011 * 179.97438 * 22 21 19 24 24 N 1.39940 * 108.90095 * 0.02562 * 23 22 21 25 25 C 1.46500 * 125.75227 * 180.02562 * 24 23 22 26 26 C 1.34255 * 108.48849 * 359.74695 * 24 23 22 27 27 C 1.50696 * 126.29152 * 180.24366 * 26 24 23 28 28 C 1.53004 * 117.49846 * 311.13974 * 27 26 24 29 29 C 1.53002 * 117.49954 * 242.48295 * 27 26 24 30 30 C 1.46924 * 118.55577 * 306.48391 * 18 17 16 31 31 H 1.08995 * 109.47165 * 60.00452 * 1 2 3 32 32 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47495 * 300.00563 * 1 2 3 34 34 H 0.96997 * 119.99773 * 265.00710 * 4 2 1 35 35 H 0.96996 * 120.00166 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.45992 * 301.33015 * 15 13 2 37 37 H 1.09001 * 109.46161 * 61.29595 * 15 13 2 38 38 H 1.08997 * 109.50016 * 58.58652 * 16 15 13 39 39 H 1.09000 * 109.49993 * 178.64895 * 16 15 13 40 40 H 1.09000 * 109.58765 * 174.42615 * 17 16 15 41 41 H 1.09004 * 109.58419 * 294.70460 * 17 16 15 42 42 H 1.07993 * 125.98691 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.47252 * 95.28489 * 25 24 23 44 44 H 1.08999 * 109.46531 * 215.28014 * 25 24 23 45 45 H 1.08997 * 109.47559 * 335.27898 * 25 24 23 46 46 H 1.09002 * 115.55415 * 96.81335 * 27 26 24 47 47 H 1.09004 * 117.49894 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49784 * 145.02114 * 28 27 26 49 49 H 1.09001 * 117.50023 * 214.97800 * 29 27 26 50 50 H 1.08998 * 117.49931 * 359.97438 * 29 27 26 51 51 H 1.09002 * 109.58395 * 293.68036 * 30 18 17 52 52 H 1.08993 * 109.58828 * 173.39739 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4241 7 6 2.6115 -0.6621 -3.5091 8 7 2.9237 -1.9394 -3.4502 9 14 2.7905 0.2699 -5.1181 10 1 4.1532 0.8540 -5.2028 11 1 2.5796 -0.6613 -6.2556 12 1 1.7813 1.3576 -5.1751 13 6 2.0399 -0.7211 1.2494 14 1 3.1299 -0.7203 1.2510 15 6 1.5267 -0.0025 2.4992 16 6 2.0631 -0.7037 3.7493 17 6 1.5532 -2.1479 3.7784 18 7 1.9181 -2.8068 2.5136 19 6 2.5962 -3.9715 2.5126 20 8 2.8363 -4.5343 1.4617 21 6 3.0469 -4.5633 3.7854 22 6 2.4217 -4.4209 5.0445 23 7 3.1189 -5.0916 5.9194 24 7 4.2078 -5.6861 5.2719 25 6 5.2284 -6.5235 5.9069 26 6 4.1558 -5.3647 3.9694 27 6 5.1307 -5.7966 2.9045 28 6 6.6219 -5.6218 3.1990 29 6 5.9276 -4.7029 2.1907 30 6 1.5297 -2.1656 1.2500 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6318 -1.1524 35 1 3.2464 -2.3969 -4.2423 36 1 1.8681 1.0327 2.4889 37 1 0.4370 -0.0253 2.5095 38 1 3.1529 -0.7031 3.7275 39 1 1.7169 -0.1772 4.6387 40 1 2.0109 -2.6803 4.6121 41 1 0.4693 -2.1504 3.8941 42 1 1.5236 -3.8563 5.2468 43 1 4.9591 -7.5736 5.7934 44 1 6.1931 -6.3425 5.4330 45 1 5.2924 -6.2774 6.9668 46 1 4.8320 -6.6656 2.3182 47 1 6.8978 -5.1939 4.1628 48 1 7.3042 -6.3755 2.8061 49 1 6.1535 -4.8525 1.1349 50 1 5.7465 -3.6709 2.4910 51 1 0.4436 -2.1695 1.1571 52 1 1.9698 -2.7090 0.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753801327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = 74.292077 kcal Electronic energy + Delta-G solvation = -31891.431969 eV Core-core repulsion = 27893.525397 eV Total energy + Delta-G solvation = -3997.906572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.71849 -40.88590 -38.94422 -38.10797 -36.86264 -34.83574 -34.13794 -33.11031 -31.61656 -31.16090 -29.57316 -28.09476 -26.69219 -26.09730 -24.69642 -24.41261 -23.60084 -22.89920 -22.06263 -21.60795 -20.18759 -19.63170 -19.21836 -18.20562 -17.59044 -16.93763 -16.70936 -16.54560 -16.23651 -15.84056 -15.75154 -15.55716 -15.43095 -15.30641 -15.07333 -14.74765 -14.27933 -14.09883 -13.92116 -13.79288 -13.59001 -13.44791 -13.28014 -13.06602 -12.91776 -12.81910 -12.61757 -12.47725 -12.27774 -12.22553 -12.03740 -11.83347 -11.75289 -11.67363 -11.61883 -11.32878 -11.28613 -11.14003 -10.91338 -10.75442 -10.36415 -9.75829 -9.39372 -8.97967 -7.89834 -5.19147 0.46357 1.11490 1.33214 1.45392 1.47970 1.56277 2.02732 2.38030 2.57538 2.65147 3.28885 3.42296 3.44318 3.72171 3.79813 3.82279 3.90482 3.92949 3.99887 4.08628 4.15324 4.20777 4.24535 4.36073 4.38205 4.44345 4.47155 4.59083 4.61973 4.65991 4.70503 4.73714 4.77388 4.87804 4.90063 4.94603 4.96755 4.99511 5.10565 5.13275 5.15773 5.18144 5.27099 5.33808 5.41217 5.48476 5.56146 5.64371 5.73279 5.80831 6.31121 6.45568 6.57097 7.32233 7.36106 8.15312 8.36633 9.33490 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003146 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.995096 B = 8899.435797 C =10504.865892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.045 0.955 4 N -0.741 5.741 5 C -0.235 4.235 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.267 1.267 13 C -0.089 4.089 14 H 0.041 0.959 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.077 3.923 18 N -0.603 5.603 19 C 0.583 3.417 20 O -0.584 6.584 21 C -0.305 4.305 22 C 0.075 3.925 23 N -0.308 5.308 24 N -0.352 5.352 25 C 0.080 3.920 26 C 0.176 3.824 27 C -0.111 4.111 28 C -0.138 4.138 29 C -0.164 4.164 30 C 0.129 3.871 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.112 0.888 48 H 0.130 0.870 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -5.170 26.706 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.063 0.937 4 N -0.382 5.382 5 C -0.367 4.367 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.192 1.192 13 C -0.109 4.109 14 H 0.060 0.940 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.044 4.044 18 N -0.335 5.335 19 C 0.373 3.627 20 O -0.465 6.465 21 C -0.320 4.320 22 C -0.111 4.111 23 N -0.128 5.128 24 N -0.131 5.131 25 C -0.059 4.059 26 C 0.042 3.958 27 C -0.130 4.130 28 C -0.175 4.175 29 C -0.202 4.202 30 C 0.006 3.994 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.245 0.755 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.143 0.857 47 H 0.130 0.870 48 H 0.148 0.852 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.093 0.907 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.958 -5.752 27.406 28.159 hybrid contribution 0.102 0.149 -2.674 2.680 sum 3.060 -5.603 24.732 25.543 Atomic orbital electron populations 1.22393 0.97313 1.00856 1.01063 1.20464 0.93234 0.94781 0.85136 0.93663 1.42799 1.78471 1.10387 1.06531 1.19646 1.34543 0.94132 0.88379 0.90502 1.25593 1.03311 0.96832 1.01598 1.69876 1.52856 1.10342 1.29206 0.85154 0.77863 0.77408 0.79447 1.21551 1.22523 1.19182 1.21578 0.98949 0.94274 0.96141 0.94005 1.21612 1.01816 0.99147 0.91996 1.21894 1.00475 0.95002 0.99068 1.22789 1.01992 0.94047 0.85525 1.48033 1.55860 1.21541 1.08092 1.17711 0.76875 0.80394 0.87734 1.90791 1.58451 1.62627 1.34600 1.19928 1.03438 1.13726 0.94906 1.24693 1.00530 0.97225 0.88610 1.77151 0.98843 1.15196 1.21579 1.48602 1.21457 1.38517 1.04484 1.22493 0.88694 0.94057 1.00644 1.20591 0.95467 0.93723 0.85971 1.20466 0.91488 1.02727 0.98368 1.23311 0.91520 1.02143 1.00510 1.22800 1.03238 0.95279 0.98920 1.21430 0.99474 0.92906 0.85555 0.94844 0.93882 0.89941 0.79730 0.94333 0.90792 0.89625 0.93216 0.87122 0.86756 0.88646 0.75510 0.88875 0.87184 0.87315 0.85740 0.86967 0.85156 0.88894 0.90637 0.90652 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.79 71.98 0.63 -4.79 16 2 C 0.17 6.89 2.72 44.99 0.12 7.01 16 3 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 4 N -0.74 -39.41 5.04 -322.95 -1.63 -41.03 16 5 C -0.24 -13.59 9.93 84.03 0.83 -12.75 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 7 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 8 N -0.97 -63.43 13.06 21.65 0.28 -63.14 16 9 Si 0.97 48.22 29.55 68.60 2.03 50.24 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 C -0.09 -3.02 2.33 -10.71 -0.02 -3.04 16 14 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 15 C -0.11 -2.43 4.77 30.62 0.15 -2.28 16 16 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 17 C 0.08 1.48 5.58 86.31 0.48 1.96 16 18 N -0.60 -18.31 2.98 -822.07 -2.45 -20.77 16 19 C 0.58 20.49 7.57 86.66 0.66 21.15 16 20 O -0.58 -26.35 15.49 -4.05 -0.06 -26.41 16 21 C -0.31 -8.51 5.72 -20.15 -0.12 -8.62 16 22 C 0.07 1.60 9.73 85.65 0.83 2.43 16 23 N -0.31 -6.69 12.50 -56.28 -0.70 -7.39 16 24 N -0.35 -6.98 3.98 -354.32 -1.41 -8.39 16 25 C 0.08 0.79 11.16 127.77 1.43 2.22 16 26 C 0.18 4.38 6.43 42.14 0.27 4.65 16 27 C -0.11 -2.59 5.06 -11.54 -0.06 -2.65 16 28 C -0.14 -2.15 8.92 30.62 0.27 -1.88 16 29 C -0.16 -4.27 10.06 30.62 0.31 -3.96 16 30 C 0.13 4.68 5.20 86.36 0.45 5.13 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.53 6.32 -2.39 -0.02 1.52 16 33 H 0.08 2.13 6.46 -2.39 -0.02 2.12 16 34 H 0.37 21.83 6.16 -92.71 -0.57 21.26 16 35 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.09 1.66 6.50 -2.39 -0.02 1.65 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.85 3.22 -2.39 -0.01 1.84 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.23 3.18 5.92 -2.91 -0.02 3.16 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.69 5.26 -2.39 -0.01 0.68 16 45 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.11 1.34 6.81 -2.38 -0.02 1.33 16 48 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 50 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.08 2.57 6.18 -2.39 -0.01 2.55 16 52 H 0.05 2.23 5.60 -2.39 -0.01 2.22 16 Total: -1.00 -83.44 399.86 3.32 -80.12 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.38 Total: 38.75 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.89 Total: -1.98 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -5.91 Total: -140.72 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -83.44 3.32 -80.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.415 kcal (2) G-P(sol) polarization free energy of solvation -83.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds