Wall clock time and date at job start Wed Apr 1 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47252 * 2 1 4 4 N 1.46502 * 109.47168 * 119.99983 * 2 1 3 5 5 C 1.36935 * 120.00012 * 275.00035 * 4 2 1 6 6 H 1.08004 * 119.99979 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00153 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99635 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46813 * 89.99785 * 9 7 5 11 11 H 1.48499 * 109.47128 * 210.00226 * 9 7 5 12 12 H 1.48504 * 109.47036 * 330.00277 * 9 7 5 13 13 C 1.53000 * 109.47300 * 239.99941 * 2 1 3 14 14 H 1.08999 * 109.52579 * 299.91640 * 13 2 1 15 15 C 1.53041 * 109.49424 * 60.00209 * 13 2 1 16 16 C 1.53042 * 109.53739 * 181.31867 * 15 13 2 17 17 C 1.53194 * 109.31187 * 298.63095 * 16 15 13 18 18 N 1.46927 * 108.77249 * 54.63477 * 17 16 15 19 19 C 1.34779 * 120.62833 * 126.37113 * 18 17 16 20 20 O 1.21608 * 120.00097 * 176.53981 * 19 18 17 21 21 C 1.47427 * 120.00058 * 356.80965 * 19 18 17 22 22 C 1.41284 * 126.41370 * 29.28747 * 21 19 18 23 23 N 1.30451 * 108.02339 * 179.97438 * 22 21 19 24 24 N 1.39935 * 108.89562 * 359.97438 * 23 22 21 25 25 C 1.46505 * 125.75244 * 180.02562 * 24 23 22 26 26 C 1.34255 * 108.49327 * 359.74984 * 24 23 22 27 27 C 1.50700 * 126.29547 * 180.24230 * 26 24 23 28 28 C 1.53002 * 117.49771 * 311.14258 * 27 26 24 29 29 C 1.52988 * 117.50053 * 242.48157 * 27 26 24 30 30 C 1.46927 * 118.74074 * 306.64067 * 18 17 16 31 31 H 1.09004 * 109.47162 * 300.00221 * 1 2 3 32 32 H 1.09003 * 109.47218 * 59.99896 * 1 2 3 33 33 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 34 34 H 0.96999 * 119.99768 * 95.00573 * 4 2 1 35 35 H 0.97002 * 119.99858 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.46677 * 61.29716 * 15 13 2 37 37 H 1.09004 * 109.46021 * 301.33186 * 15 13 2 38 38 H 1.09004 * 109.50007 * 178.68034 * 16 15 13 39 39 H 1.09003 * 109.52496 * 58.59957 * 16 15 13 40 40 H 1.08997 * 109.58628 * 294.84766 * 17 16 15 41 41 H 1.08997 * 109.70475 * 174.49198 * 17 16 15 42 42 H 1.08005 * 125.98978 * 359.97438 * 22 21 19 43 43 H 1.08996 * 109.46816 * 95.28547 * 25 24 23 44 44 H 1.08992 * 109.46819 * 215.28400 * 25 24 23 45 45 H 1.08999 * 109.46822 * 335.28479 * 25 24 23 46 46 H 1.08997 * 115.54713 * 96.80804 * 27 26 24 47 47 H 1.09004 * 117.49743 * 359.97438 * 28 27 26 48 48 H 1.08999 * 117.49685 * 145.01273 * 28 27 26 49 49 H 1.09002 * 117.50093 * 214.97494 * 29 27 26 50 50 H 1.09006 * 117.50322 * 359.97438 * 29 27 26 51 51 H 1.09001 * 109.58359 * 173.14176 * 30 18 17 52 52 H 1.08994 * 109.58905 * 293.57419 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6113 -0.6620 3.5093 8 7 2.9243 -1.9390 3.4502 9 14 2.7904 0.2700 5.1182 10 1 1.5226 0.1799 5.8862 11 1 3.8946 -0.3238 5.9140 12 1 3.0963 1.6950 4.8334 13 6 2.0400 -0.7213 -1.2492 14 1 1.6784 -1.7495 -1.2494 15 6 1.5302 -0.0002 -2.4992 16 6 2.0126 -0.7398 -3.7492 17 6 3.5442 -0.7368 -3.7802 18 7 4.0438 -1.2970 -2.5171 19 6 4.9181 -2.3227 -2.5191 20 8 5.3726 -2.7363 -1.4697 21 6 5.3280 -2.9394 -3.7939 22 6 5.3999 -2.2983 -5.0508 23 7 5.8031 -3.1750 -5.9286 24 7 6.0060 -4.4008 -5.2847 25 6 6.4599 -5.6385 -5.9236 26 6 5.7203 -4.2496 -3.9816 27 6 5.8075 -5.3155 -2.9198 28 6 5.1510 -6.6650 -3.2179 29 6 4.5128 -5.7096 -2.2065 30 6 3.5676 -0.7217 -1.2518 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1526 35 1 3.2477 -2.3963 4.2422 36 1 1.9125 1.0205 -2.5110 37 1 0.4404 0.0204 -2.4874 38 1 1.6297 -0.2392 -4.6386 39 1 1.6511 -1.7679 -3.7264 40 1 3.9053 0.2852 -3.8949 41 1 3.8961 -1.3444 -4.6139 42 1 5.1627 -1.2636 -5.2501 43 1 7.5401 -5.7305 -5.8108 44 1 5.9715 -6.4911 -5.4519 45 1 6.2059 -5.6147 -6.9833 46 1 6.7267 -5.3214 -2.3341 47 1 4.6557 -6.7817 -4.1818 48 1 5.6382 -7.5587 -2.8279 49 1 4.5801 -5.9752 -1.1515 50 1 3.5978 -5.1977 -2.5048 51 1 3.9329 -1.3208 -0.4177 52 1 3.9307 0.3016 -1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753801328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:10 Heat of formation + Delta-G solvation = 72.635356 kcal Electronic energy + Delta-G solvation = -31843.791820 eV Core-core repulsion = 27845.813408 eV Total energy + Delta-G solvation = -3997.978413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.72168 -40.83507 -38.88660 -38.10047 -36.88793 -34.82285 -34.15771 -33.04315 -31.66900 -31.14251 -29.90423 -28.07012 -26.73727 -25.80735 -24.62150 -24.10956 -23.59861 -22.91853 -21.98994 -21.40935 -20.86372 -19.67920 -19.12051 -18.20916 -17.59096 -16.86905 -16.66447 -16.59112 -16.24654 -15.93989 -15.73162 -15.56331 -15.40123 -15.15926 -14.88528 -14.71036 -14.27825 -14.14603 -13.91551 -13.78784 -13.56742 -13.50373 -13.26051 -13.03563 -12.96556 -12.77373 -12.48667 -12.46633 -12.32316 -12.23987 -12.12511 -11.94822 -11.75071 -11.63471 -11.59174 -11.32117 -11.27705 -11.14865 -10.93280 -10.73424 -10.36066 -9.76223 -9.41005 -8.95477 -7.88940 -5.17029 0.46409 1.11056 1.33293 1.45755 1.48204 1.56194 2.04166 2.37655 2.58315 2.65861 3.29121 3.44180 3.44480 3.72004 3.80455 3.82313 3.88314 3.95600 4.01349 4.08640 4.17832 4.21228 4.27414 4.35651 4.38366 4.47138 4.48034 4.59648 4.63222 4.66217 4.70882 4.72924 4.85481 4.89931 4.90863 4.96870 4.99373 5.00595 5.06894 5.09882 5.11533 5.19811 5.30454 5.33480 5.42053 5.52415 5.59104 5.63075 5.69663 5.80893 6.32046 6.45501 6.58192 7.32995 7.37308 8.15684 8.37558 9.34591 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.003144 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.743669 B = 8903.024715 C =10264.573217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.047 0.953 4 N -0.737 5.737 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.969 3.031 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.268 1.268 13 C -0.088 4.088 14 H 0.047 0.953 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.076 3.924 18 N -0.603 5.603 19 C 0.583 3.417 20 O -0.584 6.584 21 C -0.305 4.305 22 C 0.074 3.926 23 N -0.308 5.308 24 N -0.352 5.352 25 C 0.080 3.920 26 C 0.177 3.823 27 C -0.112 4.112 28 C -0.138 4.138 29 C -0.163 4.163 30 C 0.135 3.865 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.228 0.772 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.124 0.876 47 H 0.112 0.888 48 H 0.130 0.870 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.050 0.950 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -5.218 -26.747 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.065 0.935 4 N -0.376 5.376 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.193 1.193 13 C -0.108 4.108 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.045 4.045 18 N -0.335 5.335 19 C 0.373 3.627 20 O -0.465 6.465 21 C -0.320 4.320 22 C -0.111 4.111 23 N -0.128 5.128 24 N -0.130 5.130 25 C -0.059 4.059 26 C 0.043 3.957 27 C -0.132 4.132 28 C -0.175 4.175 29 C -0.201 4.201 30 C 0.012 3.988 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.244 0.756 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.142 0.858 47 H 0.131 0.869 48 H 0.148 0.852 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.069 0.931 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.295 -5.596 -27.453 28.210 hybrid contribution 0.101 0.180 2.691 2.699 sum 3.396 -5.416 -24.761 25.573 Atomic orbital electron populations 1.22319 0.97446 1.00509 1.01003 1.20468 0.92954 0.94974 0.85136 0.93485 1.42679 1.78345 1.10154 1.06456 1.19602 1.34366 0.94074 0.88245 0.90533 1.25545 1.03377 0.96846 1.01478 1.69854 1.52880 1.10369 1.29074 0.85197 0.76720 0.78125 0.80110 1.21458 1.22743 1.19276 1.21504 0.93793 0.99415 0.96103 0.93459 1.21616 1.01627 0.99327 0.92040 1.21895 0.94485 1.00947 0.99045 1.22757 0.95464 1.00630 0.85649 1.47983 1.43735 1.33713 1.08075 1.17722 0.78296 0.78986 0.87724 1.90794 1.56831 1.64084 1.34795 1.19927 1.21837 0.95362 0.94880 1.24682 0.96779 1.01008 0.88637 1.77154 1.23627 0.90361 1.21614 1.48605 1.49507 1.10430 1.04505 1.22495 1.02066 0.80747 1.00577 1.20594 0.94473 0.94671 0.85953 1.20463 0.99795 0.94466 0.98473 1.23310 1.01341 0.92306 1.00512 1.22809 0.95008 1.03381 0.98924 1.21200 0.94523 0.97678 0.85398 0.94698 0.90087 0.94599 0.80098 0.94421 0.90462 0.90030 0.87212 0.92908 0.89062 0.86674 0.75591 0.88913 0.87133 0.87302 0.85849 0.86942 0.85178 0.88830 0.90489 0.93133 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 9.14 71.98 0.66 -4.69 16 2 C 0.17 6.84 2.48 44.99 0.11 6.95 16 3 H 0.05 1.86 8.08 -2.38 -0.02 1.84 16 4 N -0.74 -38.64 4.52 -322.93 -1.46 -40.10 16 5 C -0.23 -13.23 9.93 84.03 0.83 -12.40 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 8 N -0.97 -63.02 13.06 21.65 0.28 -62.73 16 9 Si 0.97 48.32 29.55 68.60 2.03 50.34 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 C -0.09 -2.94 1.96 -10.86 -0.02 -2.96 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.42 4.85 30.62 0.15 -2.28 16 16 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 17 C 0.08 1.49 5.57 86.36 0.48 1.97 16 18 N -0.60 -18.69 2.98 -823.61 -2.45 -21.15 16 19 C 0.58 20.77 7.57 86.66 0.66 21.42 16 20 O -0.58 -26.75 15.50 -4.06 -0.06 -26.82 16 21 C -0.31 -8.59 5.72 -20.15 -0.12 -8.70 16 22 C 0.07 1.61 9.72 85.65 0.83 2.44 16 23 N -0.31 -6.74 12.50 -56.27 -0.70 -7.44 16 24 N -0.35 -7.00 3.98 -354.31 -1.41 -8.41 16 25 C 0.08 0.79 11.16 127.77 1.43 2.22 16 26 C 0.18 4.41 6.43 42.14 0.27 4.68 16 27 C -0.11 -2.62 5.06 -11.54 -0.06 -2.68 16 28 C -0.14 -2.11 8.93 30.62 0.27 -1.83 16 29 C -0.16 -4.16 10.06 30.61 0.31 -3.85 16 30 C 0.13 5.05 5.44 86.22 0.47 5.52 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 2.14 6.40 -2.39 -0.02 2.12 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.37 21.50 7.61 -92.71 -0.71 20.80 16 35 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.65 6.36 -2.38 -0.02 1.63 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 1.91 3.19 -2.39 -0.01 1.91 16 42 H 0.23 3.28 5.92 -2.91 -0.02 3.27 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 0.68 5.26 -2.39 -0.01 0.67 16 45 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.11 1.31 6.81 -2.39 -0.02 1.29 16 48 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.05 2.48 6.52 -2.39 -0.02 2.46 16 52 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -82.57 405.30 3.38 -79.19 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.23 Total: 37.74 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 6.93 Total: -0.63 kcal Atomic # 7 Polarization: -134.09 SS G_CDS: -5.74 Total: -139.83 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.34 kcal Total: -82.57 3.38 -79.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.829 kcal (2) G-P(sol) polarization free energy of solvation -82.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds