Wall clock time and date at job start Wed Apr 1 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47233 * 2 1 4 4 N 1.46500 * 109.46906 * 119.99573 * 2 1 3 5 5 C 1.36938 * 120.00325 * 274.99888 * 4 2 1 6 6 H 1.07998 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00014 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46918 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47622 * 119.99484 * 9 7 5 12 12 H 1.48494 * 109.46981 * 239.99860 * 9 7 5 13 13 C 1.53004 * 109.47110 * 239.99432 * 2 1 3 14 14 H 1.09000 * 109.51972 * 185.08359 * 13 2 1 15 15 C 1.53039 * 109.49582 * 65.00283 * 13 2 1 16 16 C 1.53038 * 109.52870 * 178.67486 * 15 13 2 17 17 C 1.53193 * 109.31259 * 61.37036 * 16 15 13 18 18 N 1.46928 * 108.77328 * 305.37092 * 17 16 15 19 19 C 1.34783 * 120.62695 * 233.58507 * 18 17 16 20 20 O 1.21597 * 120.00213 * 174.91524 * 19 18 17 21 21 C 1.47430 * 119.99817 * 354.91248 * 19 18 17 22 22 C 1.41294 * 126.41648 * 317.51607 * 21 19 18 23 23 N 1.30445 * 108.02109 * 179.97438 * 22 21 19 24 24 N 1.39927 * 108.90234 * 359.97438 * 23 22 21 25 25 C 1.46495 * 125.75762 * 179.97438 * 24 23 22 26 26 C 1.34259 * 108.48829 * 359.75169 * 24 23 22 27 27 C 1.50705 * 126.29090 * 180.24432 * 26 24 23 28 28 C 1.53003 * 117.49683 * 131.55282 * 27 26 24 29 29 C 1.52997 * 60.00011 * 252.51125 * 28 27 26 30 30 C 1.46916 * 118.74545 * 53.60616 * 18 17 16 31 31 H 1.08995 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46879 * 300.00605 * 1 2 3 33 33 H 1.09000 * 109.47149 * 60.00212 * 1 2 3 34 34 H 0.97003 * 119.99872 * 94.99959 * 4 2 1 35 35 H 0.96997 * 120.00150 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.45858 * 58.66222 * 15 13 2 37 37 H 1.09003 * 109.46120 * 298.69060 * 15 13 2 38 38 H 1.08997 * 109.50014 * 181.32719 * 16 15 13 39 39 H 1.08998 * 109.49776 * 301.42162 * 16 15 13 40 40 H 1.08997 * 109.58209 * 65.15411 * 17 16 15 41 41 H 1.08998 * 109.58942 * 185.57820 * 17 16 15 42 42 H 1.08003 * 125.98887 * 359.97438 * 22 21 19 43 43 H 1.08998 * 109.47225 * 95.21916 * 25 24 23 44 44 H 1.09007 * 109.47152 * 215.22106 * 25 24 23 45 45 H 1.08996 * 109.47246 * 335.21782 * 25 24 23 46 46 H 1.09003 * 115.55249 * 277.25719 * 27 26 24 47 47 H 1.08998 * 117.50126 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49710 * 145.02086 * 28 27 26 49 49 H 1.09004 * 117.50027 * 252.51568 * 29 28 27 50 50 H 1.08998 * 117.50338 * 107.49072 * 29 28 27 51 51 H 1.09002 * 109.58635 * 66.17753 * 30 18 17 52 52 H 1.09002 * 109.59140 * 186.60400 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6122 -0.6616 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7900 0.2701 5.1183 10 1 2.3752 1.6824 4.9211 11 1 1.9297 -0.3590 6.1523 12 1 4.2069 0.2281 5.5607 13 6 2.0400 -0.7214 -1.2492 14 1 3.1262 -0.8014 -1.2056 15 6 1.6355 0.0685 -2.4960 16 6 2.1736 -0.6350 -3.7441 17 6 1.5615 -2.0360 -3.8396 18 7 1.8219 -2.7524 -2.5835 19 6 2.4122 -3.9640 -2.5937 20 8 2.7063 -4.5059 -1.5457 21 6 2.7014 -4.6323 -3.8757 22 6 1.8467 -4.6980 -4.9989 23 7 2.4587 -5.3725 -5.9327 24 7 3.7158 -5.7643 -5.4592 25 6 4.7084 -6.5402 -6.2066 26 6 3.8607 -5.3051 -4.2059 27 6 5.0658 -5.4932 -3.3207 28 6 5.6226 -4.2561 -2.6132 29 6 6.3865 -4.8759 -3.7850 30 6 1.4261 -2.1233 -1.3162 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2485 -2.3959 4.2421 36 1 2.0506 1.0747 -2.4390 37 1 0.5485 0.1267 -2.5522 38 1 1.9054 -0.0596 -4.6302 39 1 3.2585 -0.7158 -3.6769 40 1 0.4861 -1.9549 -3.9978 41 1 2.0152 -2.5773 -4.6698 42 1 0.8597 -4.2656 -5.0715 43 1 5.4188 -5.8620 -6.6794 44 1 5.2391 -7.2045 -5.5244 45 1 4.2061 -7.1316 -6.9721 46 1 5.1139 -6.4426 -2.7875 47 1 5.1176 -3.3062 -2.7882 48 1 6.0370 -4.3916 -1.6142 49 1 7.3036 -5.4192 -3.5569 50 1 6.3839 -4.3338 -4.7306 51 1 0.3396 -2.0493 -1.2687 52 1 1.7905 -2.7221 -0.4815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753801329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:17 Heat of formation + Delta-G solvation = 82.785020 kcal Electronic energy + Delta-G solvation = -31941.526702 eV Core-core repulsion = 27943.988412 eV Total energy + Delta-G solvation = -3997.538290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74368 -39.68540 -37.60427 -37.14631 -35.32026 -33.63553 -32.73742 -31.77819 -30.44701 -29.67659 -27.97879 -27.21682 -25.40567 -24.41061 -23.55300 -23.09300 -22.72998 -21.80978 -20.93203 -20.36279 -18.95421 -18.44523 -17.45758 -16.97870 -16.66643 -15.72818 -15.63460 -15.21542 -14.81975 -14.73988 -14.57783 -14.42561 -14.07669 -13.90507 -13.66750 -13.50315 -13.10612 -12.98516 -12.83104 -12.74633 -12.53375 -12.37011 -12.09273 -11.82432 -11.68887 -11.46925 -11.29785 -11.04841 -10.94344 -10.82659 -10.81496 -10.53235 -10.43307 -10.35637 -10.15623 -10.13960 -9.80067 -9.59137 -9.52609 -9.42767 -8.83386 -8.67701 -8.24452 -6.86207 -5.66049 -2.95306 1.44514 2.10882 2.15611 3.13490 3.44983 3.48670 3.52211 3.53763 3.56338 4.13519 4.25745 4.63715 4.65135 4.70451 4.77988 4.79117 4.90243 4.93524 4.99085 5.03973 5.06045 5.17000 5.32796 5.34112 5.38623 5.45143 5.54871 5.61631 5.67834 5.74559 5.78717 5.85808 5.91155 5.94302 5.96541 6.00628 6.05431 6.16436 6.21811 6.25169 6.32728 6.46279 6.51816 6.62386 6.67958 6.75598 6.89616 6.98476 7.20611 7.38105 7.71099 7.78790 8.51616 8.53978 9.62628 10.21673 10.55901 11.56034 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.003056 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672933 B = 9159.554836 C =10400.313140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.073 0.927 15 C -0.113 4.113 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.606 5.606 19 C 0.590 3.410 20 O -0.525 6.525 21 C -0.276 4.276 22 C 0.079 3.921 23 N -0.299 5.299 24 N -0.360 5.360 25 C 0.100 3.900 26 C 0.174 3.826 27 C -0.106 4.106 28 C -0.135 4.135 29 C -0.175 4.175 30 C 0.118 3.882 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.190 0.810 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.092 0.908 51 H 0.069 0.931 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 -5.451 -23.960 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.367 5.367 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.019 4.019 18 N -0.340 5.340 19 C 0.377 3.623 20 O -0.401 6.401 21 C -0.291 4.291 22 C -0.108 4.108 23 N -0.119 5.119 24 N -0.140 5.140 25 C -0.042 4.042 26 C 0.043 3.957 27 C -0.126 4.126 28 C -0.173 4.173 29 C -0.213 4.213 30 C -0.003 4.003 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.207 0.793 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.147 0.853 47 H 0.114 0.886 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.110 0.890 51 H 0.087 0.913 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.762 -6.187 -24.543 25.461 hybrid contribution 0.064 0.483 1.634 1.705 sum 2.826 -5.705 -22.909 23.777 Atomic orbital electron populations 1.22575 0.99597 1.00898 0.99874 1.20170 0.91767 0.95220 0.85847 0.93451 1.42510 1.78073 1.10848 1.05282 1.19256 1.36354 0.93807 0.87399 0.91277 1.24739 1.02373 0.95949 0.97942 1.69690 1.50841 1.08535 1.28612 0.86176 0.77230 0.78756 0.84385 1.20673 1.21987 1.22008 1.21767 1.00944 0.94412 0.95135 0.90859 1.21606 1.01010 0.98844 0.93694 1.21905 1.00970 0.95541 0.98681 1.21842 1.00229 0.93081 0.86705 1.47977 1.60602 1.17656 1.07751 1.17258 0.77134 0.80506 0.87367 1.90834 1.51605 1.64743 1.32902 1.20015 0.96985 1.14043 0.98044 1.24007 0.99901 0.97018 0.89847 1.77161 0.92172 1.19513 1.23016 1.48240 1.13469 1.41878 1.10381 1.21925 0.89640 0.95390 0.97199 1.20461 0.95531 0.94050 0.85664 1.20467 0.89702 1.00874 1.01553 1.22911 1.01086 0.95886 0.97404 1.23096 0.94339 1.04014 0.99820 1.21827 0.99108 0.93799 0.85608 0.93184 0.92972 0.94347 0.78014 0.93627 0.91795 0.91545 0.91202 0.91796 0.91623 0.89828 0.79346 0.90473 0.89278 0.88921 0.85307 0.88556 0.87263 0.87834 0.88952 0.91260 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 8.76 37.16 0.33 -2.67 16 2 C 0.18 3.53 2.67 -67.93 -0.18 3.35 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.73 -18.32 5.06 -53.43 -0.27 -18.60 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 9 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 C -0.10 -1.68 2.27 -90.50 -0.21 -1.89 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.11 -1.42 4.89 -26.69 -0.13 -1.55 16 16 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 17 C 0.10 1.13 5.56 -3.71 -0.02 1.11 16 18 N -0.61 -8.83 2.97 -174.04 -0.52 -9.34 16 19 C 0.59 9.63 6.50 -12.51 -0.08 9.55 16 20 O -0.53 -10.77 15.74 5.28 0.08 -10.69 16 21 C -0.28 -3.77 5.10 -105.06 -0.54 -4.30 16 22 C 0.08 0.92 9.66 -16.98 -0.16 0.75 16 23 N -0.30 -3.57 12.50 30.86 0.39 -3.19 16 24 N -0.36 -3.84 3.98 -63.34 -0.25 -4.09 16 25 C 0.10 0.62 11.11 59.84 0.67 1.28 16 26 C 0.17 2.14 6.44 -81.60 -0.53 1.61 16 27 C -0.11 -1.17 5.23 -91.77 -0.48 -1.65 16 28 C -0.14 -1.63 9.19 -26.73 -0.25 -1.87 16 29 C -0.18 -1.50 10.17 -26.73 -0.27 -1.77 16 30 C 0.12 1.99 5.18 -3.72 -0.02 1.97 16 31 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 34 H 0.39 10.54 6.48 -40.82 -0.26 10.27 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.78 6.63 -51.93 -0.34 0.44 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.84 4.87 -51.93 -0.25 0.59 16 42 H 0.19 1.68 7.52 -52.48 -0.39 1.28 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.42 7.92 -51.92 -0.41 0.01 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.10 1.32 7.78 -51.93 -0.40 0.91 16 48 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.07 1.12 6.06 -51.93 -0.31 0.80 16 52 H 0.10 2.11 5.82 -51.93 -0.30 1.80 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -34.94 406.25 -9.42 -44.36 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.39 Total: 10.66 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.28 Total: -4.94 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.07 Total: -63.29 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.94 -9.42 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.143 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds