Wall clock time and date at job start Wed Apr 1 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47233 * 2 1 4 4 N 1.46500 * 109.46906 * 119.99573 * 2 1 3 5 5 C 1.36938 * 120.00325 * 274.99888 * 4 2 1 6 6 H 1.07998 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00014 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46918 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47622 * 119.99484 * 9 7 5 12 12 H 1.48494 * 109.46981 * 239.99860 * 9 7 5 13 13 C 1.53004 * 109.47110 * 239.99432 * 2 1 3 14 14 H 1.09000 * 109.51972 * 185.08359 * 13 2 1 15 15 C 1.53039 * 109.49582 * 65.00283 * 13 2 1 16 16 C 1.53038 * 109.52870 * 178.67486 * 15 13 2 17 17 C 1.53193 * 109.31259 * 61.37036 * 16 15 13 18 18 N 1.46928 * 108.77328 * 305.37092 * 17 16 15 19 19 C 1.34783 * 120.62695 * 233.58507 * 18 17 16 20 20 O 1.21597 * 120.00213 * 174.91524 * 19 18 17 21 21 C 1.47430 * 119.99817 * 354.91248 * 19 18 17 22 22 C 1.41294 * 126.41648 * 317.51607 * 21 19 18 23 23 N 1.30445 * 108.02109 * 179.97438 * 22 21 19 24 24 N 1.39927 * 108.90234 * 359.97438 * 23 22 21 25 25 C 1.46495 * 125.75762 * 179.97438 * 24 23 22 26 26 C 1.34259 * 108.48829 * 359.75169 * 24 23 22 27 27 C 1.50705 * 126.29090 * 180.24432 * 26 24 23 28 28 C 1.53003 * 117.49683 * 131.55282 * 27 26 24 29 29 C 1.52997 * 60.00011 * 252.51125 * 28 27 26 30 30 C 1.46916 * 118.74545 * 53.60616 * 18 17 16 31 31 H 1.08995 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46879 * 300.00605 * 1 2 3 33 33 H 1.09000 * 109.47149 * 60.00212 * 1 2 3 34 34 H 0.97003 * 119.99872 * 94.99959 * 4 2 1 35 35 H 0.96997 * 120.00150 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.45858 * 58.66222 * 15 13 2 37 37 H 1.09003 * 109.46120 * 298.69060 * 15 13 2 38 38 H 1.08997 * 109.50014 * 181.32719 * 16 15 13 39 39 H 1.08998 * 109.49776 * 301.42162 * 16 15 13 40 40 H 1.08997 * 109.58209 * 65.15411 * 17 16 15 41 41 H 1.08998 * 109.58942 * 185.57820 * 17 16 15 42 42 H 1.08003 * 125.98887 * 359.97438 * 22 21 19 43 43 H 1.08998 * 109.47225 * 95.21916 * 25 24 23 44 44 H 1.09007 * 109.47152 * 215.22106 * 25 24 23 45 45 H 1.08996 * 109.47246 * 335.21782 * 25 24 23 46 46 H 1.09003 * 115.55249 * 277.25719 * 27 26 24 47 47 H 1.08998 * 117.50126 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49710 * 145.02086 * 28 27 26 49 49 H 1.09004 * 117.50027 * 252.51568 * 29 28 27 50 50 H 1.08998 * 117.50338 * 107.49072 * 29 28 27 51 51 H 1.09002 * 109.58635 * 66.17753 * 30 18 17 52 52 H 1.09002 * 109.59140 * 186.60400 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6122 -0.6616 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7900 0.2701 5.1183 10 1 2.3752 1.6824 4.9211 11 1 1.9297 -0.3590 6.1523 12 1 4.2069 0.2281 5.5607 13 6 2.0400 -0.7214 -1.2492 14 1 3.1262 -0.8014 -1.2056 15 6 1.6355 0.0685 -2.4960 16 6 2.1736 -0.6350 -3.7441 17 6 1.5615 -2.0360 -3.8396 18 7 1.8219 -2.7524 -2.5835 19 6 2.4122 -3.9640 -2.5937 20 8 2.7063 -4.5059 -1.5457 21 6 2.7014 -4.6323 -3.8757 22 6 1.8467 -4.6980 -4.9989 23 7 2.4587 -5.3725 -5.9327 24 7 3.7158 -5.7643 -5.4592 25 6 4.7084 -6.5402 -6.2066 26 6 3.8607 -5.3051 -4.2059 27 6 5.0658 -5.4932 -3.3207 28 6 5.6226 -4.2561 -2.6132 29 6 6.3865 -4.8759 -3.7850 30 6 1.4261 -2.1233 -1.3162 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 1.1527 35 1 3.2485 -2.3959 4.2421 36 1 2.0506 1.0747 -2.4390 37 1 0.5485 0.1267 -2.5522 38 1 1.9054 -0.0596 -4.6302 39 1 3.2585 -0.7158 -3.6769 40 1 0.4861 -1.9549 -3.9978 41 1 2.0152 -2.5773 -4.6698 42 1 0.8597 -4.2656 -5.0715 43 1 5.4188 -5.8620 -6.6794 44 1 5.2391 -7.2045 -5.5244 45 1 4.2061 -7.1316 -6.9721 46 1 5.1139 -6.4426 -2.7875 47 1 5.1176 -3.3062 -2.7882 48 1 6.0370 -4.3916 -1.6142 49 1 7.3036 -5.4192 -3.5569 50 1 6.3839 -4.3338 -4.7306 51 1 0.3396 -2.0493 -1.2687 52 1 1.7905 -2.7221 -0.4815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753801329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:16 Heat of formation + Delta-G solvation = 60.100581 kcal Electronic energy + Delta-G solvation = -31942.510373 eV Core-core repulsion = 27943.988412 eV Total energy + Delta-G solvation = -3998.521961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.65756 -40.89426 -38.95024 -38.04899 -36.85261 -34.77366 -34.15663 -33.12487 -31.63712 -31.10561 -29.45775 -28.10198 -26.51586 -26.15906 -24.66874 -24.45564 -23.57609 -22.84075 -22.07164 -21.36885 -20.24370 -19.58204 -19.20161 -18.30279 -17.63739 -16.94075 -16.71000 -16.50302 -16.17338 -15.87868 -15.65526 -15.45866 -15.42100 -15.26900 -14.98210 -14.80183 -14.30565 -14.12953 -13.90091 -13.85108 -13.58355 -13.46440 -13.29103 -13.00627 -12.93683 -12.85715 -12.63358 -12.53241 -12.26996 -12.22860 -12.04156 -11.87936 -11.76658 -11.70048 -11.67428 -11.34028 -11.29592 -11.15773 -10.92627 -10.79977 -10.36450 -9.69884 -9.41280 -8.97702 -7.89821 -5.19006 0.51120 1.18332 1.35711 1.45706 1.47275 1.57122 1.98143 2.30870 2.57587 2.66471 3.31059 3.42618 3.45796 3.72639 3.80639 3.84985 3.90735 3.92783 4.03141 4.12858 4.15713 4.22246 4.25663 4.36842 4.40721 4.44284 4.53522 4.63579 4.64021 4.66111 4.68559 4.72253 4.77510 4.86498 4.89961 4.94433 4.96637 4.99778 5.11536 5.12761 5.15306 5.17617 5.27847 5.36827 5.40634 5.48727 5.56841 5.64885 5.73805 5.83513 6.31282 6.48733 6.55778 7.31217 7.36183 8.15400 8.36686 9.33728 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.003056 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.672933 B = 9159.554836 C =10400.313140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.046 0.954 4 N -0.741 5.741 5 C -0.232 4.232 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.089 4.089 14 H 0.041 0.959 15 C -0.107 4.107 16 C -0.127 4.127 17 C 0.100 3.900 18 N -0.603 5.603 19 C 0.587 3.413 20 O -0.584 6.584 21 C -0.303 4.303 22 C 0.086 3.914 23 N -0.309 5.309 24 N -0.353 5.353 25 C 0.086 3.914 26 C 0.172 3.828 27 C -0.113 4.113 28 C -0.166 4.166 29 C -0.131 4.131 30 C 0.127 3.873 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.214 0.786 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.130 0.870 50 H 0.106 0.894 51 H 0.081 0.919 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -4.251 -27.528 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.064 0.936 4 N -0.381 5.381 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.801 3.199 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.110 4.110 14 H 0.059 0.941 15 C -0.144 4.144 16 C -0.165 4.165 17 C -0.021 4.021 18 N -0.335 5.335 19 C 0.376 3.624 20 O -0.464 6.464 21 C -0.318 4.318 22 C -0.101 4.101 23 N -0.129 5.129 24 N -0.131 5.131 25 C -0.053 4.053 26 C 0.039 3.961 27 C -0.133 4.133 28 C -0.204 4.204 29 C -0.168 4.168 30 C 0.005 3.995 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.202 0.798 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.231 0.769 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.147 0.853 47 H 0.090 0.910 48 H 0.111 0.889 49 H 0.148 0.852 50 H 0.124 0.876 51 H 0.099 0.901 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.255 -4.925 -28.209 28.725 hybrid contribution 0.230 0.111 2.648 2.660 sum 2.485 -4.814 -25.561 26.129 Atomic orbital electron populations 1.22399 0.97336 1.00887 1.01070 1.20467 0.93209 0.94788 0.85101 0.93621 1.42788 1.78440 1.10346 1.06552 1.19679 1.34288 0.94146 0.88337 0.90455 1.25591 1.03373 0.96849 1.01598 1.69883 1.52944 1.10390 1.29114 0.85090 0.76630 0.78268 0.79915 1.18712 1.22324 1.22348 1.21577 0.98754 0.94594 0.96030 0.94080 1.21588 1.02305 0.98554 0.91992 1.21894 0.99968 0.95506 0.99086 1.22177 1.02197 0.92847 0.84912 1.48035 1.59782 1.17351 1.08309 1.17732 0.76225 0.80710 0.87724 1.90799 1.54114 1.66324 1.35152 1.19898 0.98658 1.15743 0.97491 1.24317 1.00506 0.96621 0.88631 1.77131 0.92809 1.19725 1.23236 1.48570 1.13604 1.41124 1.09844 1.22360 0.89343 0.95911 0.97659 1.20585 0.95461 0.93610 0.86466 1.20501 0.90993 1.00098 1.01701 1.22754 1.03671 0.95609 0.98329 1.23191 0.93816 1.01535 0.98234 1.21512 0.99342 0.93249 0.85416 0.93786 0.94804 0.90008 0.79835 0.94354 0.90920 0.89541 0.87380 0.93319 0.88734 0.88599 0.76937 0.88407 0.87665 0.87709 0.85264 0.91004 0.88922 0.85208 0.87569 0.90080 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.76 71.98 0.63 -4.77 16 2 C 0.17 6.85 2.67 44.99 0.12 6.97 16 3 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 4 N -0.74 -39.23 5.06 -322.94 -1.63 -40.86 16 5 C -0.23 -13.39 9.93 84.03 0.83 -12.56 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 8 N -0.97 -63.40 13.06 21.65 0.28 -63.12 16 9 Si 0.97 48.17 29.55 68.60 2.03 50.19 16 10 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 13 C -0.09 -2.99 2.27 -10.71 -0.02 -3.02 16 14 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.11 -2.39 4.89 30.62 0.15 -2.24 16 16 C -0.13 -2.32 6.08 30.67 0.19 -2.13 16 17 C 0.10 1.93 5.56 86.36 0.48 2.41 16 18 N -0.60 -17.86 2.97 -822.79 -2.45 -20.31 16 19 C 0.59 20.21 6.50 86.66 0.56 20.78 16 20 O -0.58 -26.27 15.74 -4.02 -0.06 -26.33 16 21 C -0.30 -8.28 5.10 -20.15 -0.10 -8.38 16 22 C 0.09 1.84 9.66 85.65 0.83 2.67 16 23 N -0.31 -6.72 12.50 -56.27 -0.70 -7.42 16 24 N -0.35 -6.82 3.98 -354.31 -1.41 -8.23 16 25 C 0.09 0.81 11.11 127.77 1.42 2.23 16 26 C 0.17 4.14 6.44 42.14 0.27 4.41 16 27 C -0.11 -2.51 5.23 -11.54 -0.06 -2.58 16 28 C -0.17 -4.28 9.19 30.59 0.28 -4.00 16 29 C -0.13 -2.04 10.17 30.59 0.31 -1.73 16 30 C 0.13 4.49 5.18 86.36 0.45 4.94 16 31 H 0.04 1.55 6.23 -2.39 -0.01 1.54 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 2.09 6.60 -2.39 -0.02 2.08 16 34 H 0.37 21.77 6.48 -92.71 -0.60 21.17 16 35 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.64 6.63 -2.39 -0.02 1.63 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.67 4.87 -2.39 -0.01 1.66 16 42 H 0.21 3.21 7.52 -2.91 -0.02 3.19 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.10 0.67 7.92 -2.38 -0.02 0.65 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.07 2.17 7.78 -2.39 -0.02 2.16 16 48 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.08 2.63 6.06 -2.39 -0.01 2.61 16 52 H 0.05 2.20 5.82 -2.39 -0.01 2.18 16 Total: -1.00 -82.88 406.25 3.19 -79.69 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.33 Total: 37.89 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 6.80 Total: -1.49 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -5.91 Total: -139.95 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Total: -82.88 3.19 -79.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.789 kcal (2) G-P(sol) polarization free energy of solvation -82.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds