Wall clock time and date at job start Wed Apr 1 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.46987 * 2 1 4 4 N 1.46503 * 109.47275 * 240.00018 * 2 1 3 5 5 C 1.36940 * 120.00123 * 84.99623 * 4 2 1 6 6 H 1.08008 * 119.99732 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00043 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99781 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47595 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47336 * 119.99866 * 9 7 5 12 12 H 1.48503 * 109.47203 * 239.99945 * 9 7 5 13 13 C 1.53001 * 109.47180 * 119.99652 * 2 1 3 14 14 H 1.09006 * 109.49258 * 179.97438 * 13 2 1 15 15 C 1.53034 * 109.50064 * 299.99808 * 13 2 1 16 16 C 1.53038 * 109.54023 * 181.31357 * 15 13 2 17 17 C 1.53183 * 109.31353 * 298.64000 * 16 15 13 18 18 N 1.46927 * 108.78073 * 54.63420 * 17 16 15 19 19 C 1.34770 * 120.63422 * 126.36495 * 18 17 16 20 20 O 1.21521 * 119.99948 * 180.02562 * 19 18 17 21 21 C 1.48176 * 120.00403 * 359.97438 * 19 18 17 22 22 C 1.39032 * 119.69524 * 202.62642 * 21 19 18 23 23 C 1.39450 * 118.95792 * 179.97438 * 22 21 19 24 24 N 1.39194 * 120.83101 * 179.97438 * 23 22 21 25 25 C 1.46508 * 119.99869 * 174.06879 * 24 23 22 26 26 C 1.46495 * 120.00061 * 354.07041 * 24 23 22 27 27 C 1.39420 * 118.33472 * 0.02562 * 23 22 21 28 28 C 1.38232 * 119.26640 * 0.25062 * 27 23 22 29 29 N 1.31652 * 120.99052 * 359.47621 * 28 27 23 30 30 C 1.46925 * 118.73523 * 306.64629 * 18 17 16 31 31 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47431 * 300.00068 * 1 2 3 33 33 H 1.08997 * 109.47458 * 59.99615 * 1 2 3 34 34 H 0.96997 * 119.99643 * 265.00132 * 4 2 1 35 35 H 0.96995 * 119.99697 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.45734 * 61.29871 * 15 13 2 37 37 H 1.09000 * 109.45328 * 301.33308 * 15 13 2 38 38 H 1.09001 * 109.49610 * 178.68623 * 16 15 13 39 39 H 1.09003 * 109.49328 * 58.59396 * 16 15 13 40 40 H 1.08997 * 109.59179 * 294.84340 * 17 16 15 41 41 H 1.09001 * 109.58925 * 174.41781 * 17 16 15 42 42 H 1.07997 * 120.52263 * 359.95753 * 22 21 19 43 43 H 1.08998 * 109.46550 * 90.00058 * 25 24 23 44 44 H 1.08994 * 109.46895 * 210.00433 * 25 24 23 45 45 H 1.09004 * 109.47088 * 330.00474 * 25 24 23 46 46 H 1.08999 * 109.46929 * 5.12458 * 26 24 23 47 47 H 1.09006 * 109.46943 * 125.12597 * 26 24 23 48 48 H 1.08997 * 109.47243 * 245.12272 * 26 24 23 49 49 H 1.08004 * 120.36286 * 179.97438 * 27 23 22 50 50 H 1.07998 * 119.50276 * 179.72945 * 28 27 23 51 51 H 1.09004 * 109.58988 * 173.14115 * 30 18 17 52 52 H 1.09007 * 109.58419 * 293.56427 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6113 -0.6620 -3.5093 8 7 2.9244 -1.9390 -3.4501 9 14 2.7903 0.2700 -5.1182 10 1 2.3762 1.6824 -4.9209 11 1 4.2072 0.2263 -5.5607 12 1 1.9291 -0.3578 -6.1524 13 6 2.0399 -0.7212 1.2493 14 1 3.1300 -0.7218 1.2494 15 6 1.5302 -0.0002 2.4992 16 6 2.0667 -0.7015 3.7492 17 6 1.5534 -2.1444 3.7802 18 7 1.9150 -2.8024 2.5172 19 6 2.5906 -3.9684 2.5192 20 8 2.8842 -4.5023 1.4677 21 6 2.9767 -4.5990 3.8033 22 6 4.0358 -5.4990 3.8377 23 6 4.3863 -6.0829 5.0546 24 7 5.4396 -6.9894 5.1337 25 6 5.8765 -7.4927 6.4384 26 6 6.1114 -7.4402 3.9124 27 6 3.6546 -5.7369 6.1898 28 6 2.6109 -4.8380 6.0730 29 7 2.3071 -4.2993 4.9108 30 6 1.5313 -2.1616 1.2519 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 2.2490 -1.6317 -1.1526 35 1 3.2477 -2.3963 -4.2421 36 1 0.4404 -0.0204 2.5111 37 1 1.8741 1.0341 2.4873 38 1 1.7224 -0.1736 4.6385 39 1 3.1565 -0.7034 3.7258 40 1 0.4695 -2.1444 3.8949 41 1 2.0111 -2.6773 4.6137 42 1 4.5783 -5.7423 2.9362 43 1 5.3198 -8.3971 6.6839 44 1 6.9418 -7.7204 6.4018 45 1 5.6929 -6.7350 7.2002 46 1 5.7140 -6.8945 3.0566 47 1 7.1821 -7.2540 3.9968 48 1 5.9380 -8.5075 3.7751 49 1 3.8976 -6.1697 7.1490 50 1 2.0388 -4.5706 6.9490 51 1 1.9744 -2.7057 0.4177 52 1 0.4455 -2.1629 1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753801642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:41 Heat of formation + Delta-G solvation = 42.681693 kcal Electronic energy + Delta-G solvation = -31146.900775 eV Core-core repulsion = 27147.623474 eV Total energy + Delta-G solvation = -3999.277301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96201 -39.54908 -37.74934 -37.18184 -35.28252 -32.91010 -31.73212 -31.71638 -31.49628 -29.61658 -28.77483 -27.75366 -26.02825 -25.45735 -24.44869 -23.34059 -22.96567 -22.25523 -20.96288 -19.70863 -18.50396 -17.74288 -17.34596 -16.96735 -16.36793 -15.79425 -15.58991 -15.37153 -15.05489 -14.85095 -14.68966 -14.48157 -14.24722 -13.96216 -13.67029 -13.55874 -13.43280 -13.02945 -12.92311 -12.78101 -12.68716 -12.52730 -12.47497 -12.28471 -11.75469 -11.64488 -11.37366 -11.19660 -10.90381 -10.81268 -10.75295 -10.48860 -10.33280 -10.14991 -10.08653 -9.99763 -9.77356 -9.45535 -9.36915 -8.99513 -8.80984 -8.24095 -8.00380 -6.84623 -5.64502 -2.93739 0.65104 1.19375 2.57157 2.87890 3.18775 3.49906 3.54904 3.57553 3.75483 4.12807 4.39628 4.47718 4.67143 4.72895 4.84599 4.87500 4.97190 5.01142 5.11989 5.15968 5.19576 5.21555 5.25786 5.35542 5.41289 5.43999 5.60169 5.63048 5.69587 5.73850 5.80902 5.91215 5.96437 6.03625 6.11245 6.12778 6.25065 6.27096 6.37087 6.46560 6.51093 6.57407 6.68907 6.72294 6.79290 6.90211 6.96892 7.00326 7.23365 7.60875 7.76061 7.80393 8.38826 8.53338 9.64068 10.23175 10.57375 11.57765 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.002656 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.388269 B =10538.397817 C =12202.444906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.135 4.135 17 C 0.077 3.923 18 N -0.586 5.586 19 C 0.562 3.438 20 O -0.526 6.526 21 C 0.131 3.869 22 C -0.191 4.191 23 C 0.246 3.754 24 N -0.626 5.626 25 C 0.092 3.908 26 C 0.082 3.918 27 C -0.238 4.238 28 C 0.133 3.867 29 N -0.493 5.493 30 C 0.114 3.886 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.135 0.865 50 H 0.161 0.839 51 H 0.100 0.900 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -8.752 27.017 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.174 4.174 17 C -0.046 4.046 18 N -0.317 5.317 19 C 0.348 3.652 20 O -0.402 6.402 21 C -0.005 4.005 22 C -0.216 4.216 23 C 0.135 3.865 24 N -0.337 5.337 25 C -0.051 4.051 26 C -0.061 4.061 27 C -0.264 4.264 28 C -0.025 4.025 29 N -0.209 5.209 30 C -0.008 4.008 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.165 0.835 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.153 0.847 50 H 0.178 0.822 51 H 0.118 0.882 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.417 -8.469 26.207 27.647 hybrid contribution 0.881 -0.419 -0.849 1.293 sum 3.298 -8.888 25.358 27.072 Atomic orbital electron populations 1.22565 0.99522 1.00883 0.99914 1.20175 0.91821 0.95239 0.85783 0.93371 1.42537 1.78096 1.10850 1.05309 1.19271 1.36339 0.93811 0.87368 0.91228 1.24747 1.02397 0.95961 0.97980 1.69691 1.50880 1.08569 1.28623 0.86161 0.77217 0.78746 0.84328 1.20661 1.22009 1.21994 1.21677 1.00860 0.94313 0.95379 0.91040 1.21638 1.00839 0.98999 0.93832 1.21968 1.00967 0.96137 0.98304 1.22807 1.00795 0.93106 0.87882 1.47989 1.54168 1.21101 1.08423 1.17951 0.78529 0.81441 0.87315 1.90852 1.54723 1.63039 1.31568 1.20962 0.92646 0.94319 0.92587 1.21626 1.01152 1.00815 0.98024 1.17983 0.87079 0.87837 0.93581 1.46302 1.34217 1.46057 1.07138 1.21686 1.00092 0.99219 0.84109 1.21850 0.97186 1.00101 0.86939 1.21739 1.00552 1.05762 0.98328 1.22610 0.93266 0.91152 0.95441 1.67633 1.29789 1.24826 0.98608 1.21785 1.00012 0.93352 0.85605 0.93288 0.94218 0.92958 0.78024 0.93623 0.91508 0.91982 0.91289 0.92179 0.91925 0.84464 0.83536 0.92959 0.91091 0.91106 0.89736 0.91977 0.92312 0.84728 0.82198 0.88184 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 8.79 37.15 0.33 -2.79 16 2 C 0.18 3.68 2.72 -67.93 -0.18 3.50 16 3 H 0.05 1.00 8.08 -51.92 -0.42 0.59 16 4 N -0.73 -18.85 5.04 -53.42 -0.27 -19.12 16 5 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 6 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 9 Si 0.90 23.12 29.55 -169.99 -5.02 18.09 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 13 C -0.10 -1.80 2.32 -90.72 -0.21 -2.01 16 14 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.12 -1.58 4.78 -26.69 -0.13 -1.71 16 16 C -0.14 -1.64 6.08 -26.62 -0.16 -1.80 16 17 C 0.08 0.99 5.98 -3.71 -0.02 0.97 16 18 N -0.59 -9.62 2.98 -174.02 -0.52 -10.14 16 19 C 0.56 9.97 7.61 -12.18 -0.09 9.88 16 20 O -0.53 -11.31 15.95 5.35 0.09 -11.22 16 21 C 0.13 1.88 6.43 -83.06 -0.53 1.35 16 22 C -0.19 -2.44 8.88 -38.84 -0.34 -2.79 16 23 C 0.25 2.49 6.56 -83.63 -0.55 1.94 16 24 N -0.63 -5.03 3.40 -187.37 -0.64 -5.66 16 25 C 0.09 0.44 10.13 59.85 0.61 1.05 16 26 C 0.08 0.58 10.63 59.84 0.64 1.22 16 27 C -0.24 -1.97 9.22 -39.14 -0.36 -2.33 16 28 C 0.13 1.17 11.17 -17.63 -0.20 0.97 16 29 N -0.49 -5.91 6.41 -9.89 -0.06 -5.97 16 30 C 0.11 2.09 5.20 -3.93 -0.02 2.07 16 31 H 0.05 0.91 6.32 -51.93 -0.33 0.58 16 32 H 0.04 0.60 6.46 -51.93 -0.34 0.27 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.38 10.79 6.17 -40.82 -0.25 10.54 16 35 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.88 6.50 -51.92 -0.34 0.54 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.14 1.69 4.02 -76.50 -0.31 1.38 16 42 H 0.15 1.93 5.62 -52.49 -0.29 1.64 16 43 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 45 H 0.07 0.29 6.52 -51.93 -0.34 -0.05 16 46 H 0.08 0.71 5.39 -51.93 -0.28 0.43 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.13 0.74 6.44 -52.48 -0.34 0.40 16 50 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 51 H 0.10 2.23 5.58 -51.93 -0.29 1.94 16 52 H 0.07 1.27 6.16 -51.92 -0.32 0.95 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -35.10 398.45 -9.21 -44.31 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.03 Total: 10.20 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.48 Total: 2.07 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -0.76 Total: -69.45 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.10 -9.21 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.995 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds