Wall clock time and date at job start Wed Apr 1 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47272 * 2 1 4 4 N 1.46507 * 109.47069 * 120.00297 * 2 1 3 5 5 C 1.36937 * 119.99544 * 274.99648 * 4 2 1 6 6 H 1.07997 * 120.00233 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99174 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99325 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00483 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47016 * 90.00156 * 9 7 5 11 11 H 1.48502 * 109.47009 * 209.99800 * 9 7 5 12 12 H 1.48496 * 109.47045 * 330.00313 * 9 7 5 13 13 C 1.53003 * 109.46890 * 240.00024 * 2 1 3 14 14 H 1.08998 * 110.88744 * 296.11913 * 13 2 1 15 15 C 1.55159 * 111.00336 * 172.20092 * 13 2 1 16 16 C 1.54320 * 102.86240 * 206.23094 * 15 13 2 17 17 N 1.47025 * 107.27467 * 22.51899 * 16 15 13 18 18 C 1.34773 * 125.64708 * 180.96739 * 17 16 15 19 19 O 1.21279 * 120.00042 * 179.69882 * 18 17 16 20 20 C 1.50702 * 119.99962 * 359.69515 * 18 17 16 21 21 C 1.50702 * 109.46987 * 179.97438 * 20 18 17 22 22 N 1.31074 * 125.95591 * 90.02879 * 21 20 18 23 23 N 1.40297 * 108.26839 * 179.97438 * 22 21 20 24 24 H 0.97000 * 126.09116 * 179.97438 * 23 22 21 25 25 C 1.34329 * 107.81522 * 359.93929 * 23 22 21 26 26 C 1.35749 * 107.84395 * 0.07894 * 25 23 22 27 27 C 1.50838 * 124.10853 * 179.86338 * 26 25 23 28 28 C 1.53371 * 108.38000 * 343.43905 * 27 26 25 29 29 C 1.53102 * 109.50894 * 49.95055 * 28 27 26 30 30 C 1.50826 * 128.03424 * 180.12077 * 25 23 22 31 31 C 1.47421 * 108.70469 * 0.71029 * 17 16 15 32 32 H 1.09001 * 109.47216 * 59.99423 * 1 2 3 33 33 H 1.08999 * 109.47768 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47077 * 299.99863 * 1 2 3 35 35 H 0.97000 * 120.00063 * 94.99819 * 4 2 1 36 36 H 0.96995 * 119.99964 * 180.02562 * 8 7 5 37 37 H 1.09002 * 110.71752 * 324.78373 * 15 13 2 38 38 H 1.09000 * 110.72424 * 87.88116 * 15 13 2 39 39 H 1.09002 * 109.98511 * 263.04749 * 16 15 13 40 40 H 1.08994 * 109.77383 * 141.88559 * 16 15 13 41 41 H 1.09002 * 109.47094 * 60.00140 * 20 18 17 42 42 H 1.08992 * 109.47541 * 300.00191 * 20 18 17 43 43 H 1.09000 * 109.68266 * 103.15767 * 27 26 25 44 44 H 1.08993 * 109.68271 * 223.67998 * 27 26 25 45 45 H 1.08998 * 109.46515 * 169.96479 * 28 27 26 46 46 H 1.09005 * 109.46273 * 289.93408 * 28 27 26 47 47 H 1.08991 * 109.47222 * 49.73911 * 29 28 27 48 48 H 1.09000 * 109.46116 * 169.72018 * 29 28 27 49 49 H 1.09004 * 109.67917 * 43.67427 * 30 25 23 50 50 H 1.09000 * 109.71588 * 283.14428 * 30 25 23 51 51 H 1.09003 * 110.36860 * 94.93082 * 31 17 16 52 52 H 1.08996 * 110.36841 * 217.14656 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6113 -0.6622 3.5092 8 7 2.7366 -0.0057 4.6431 9 14 3.0555 -2.4746 3.4253 10 1 4.4883 -2.6168 3.0621 11 1 2.8153 -3.1049 4.7484 12 1 2.2160 -3.1430 2.3989 13 6 2.0399 -0.7213 -1.2493 14 1 1.7467 -1.7710 -1.2388 15 6 3.5783 -0.5740 -1.3874 16 6 3.8019 -0.7166 -2.9077 17 7 2.5330 -0.3789 -3.5691 18 6 2.3101 -0.4003 -4.8981 19 8 1.2173 -0.1064 -5.3345 20 6 3.4186 -0.7894 -5.8420 21 6 2.9131 -0.7340 -7.2606 22 7 2.9548 0.3098 -8.0523 23 7 2.3865 -0.0492 -9.2837 24 1 2.2858 0.5282 -10.0566 25 6 2.0073 -1.3353 -9.2020 26 6 2.3209 -1.7833 -7.9595 27 6 2.0503 -3.1850 -7.4725 28 6 1.0321 -3.8368 -8.4163 29 6 1.4887 -3.6539 -9.8661 30 6 1.3495 -2.1795 -10.2647 31 6 1.5433 -0.0189 -2.5376 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 2.2490 -1.6319 1.1526 36 1 3.0599 -0.4629 5.4351 37 1 3.9051 0.4046 -1.0360 38 1 4.0920 -1.3681 -0.8455 39 1 4.0840 -1.7416 -3.1482 40 1 4.5833 -0.0292 -3.2315 41 1 3.7508 -1.8023 -5.6143 42 1 4.2537 -0.0986 -5.7262 43 1 2.9761 -3.7604 -7.4773 44 1 1.6448 -3.1505 -6.4614 45 1 0.9568 -4.9005 -8.1906 46 1 0.0580 -3.3669 -8.2801 47 1 2.5309 -3.9586 -9.9600 48 1 0.8706 -4.2673 -10.5217 49 1 1.8399 -2.0105 -11.2235 50 1 0.2941 -1.9179 -10.3412 51 1 1.5193 1.0615 -2.3954 52 1 0.5554 -0.3863 -2.8152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754791222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:42 Heat of formation + Delta-G solvation = 34.227663 kcal Electronic energy + Delta-G solvation = -30489.036056 eV Core-core repulsion = 26489.392161 eV Total energy + Delta-G solvation = -3999.643895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.83335 -40.00266 -37.86908 -36.80917 -35.34132 -33.75543 -32.44510 -30.97981 -30.29639 -29.71176 -29.60565 -28.65369 -27.30787 -24.49473 -23.87284 -22.92550 -22.39125 -21.40643 -20.62821 -19.83077 -19.09620 -18.87517 -17.79071 -17.63063 -17.11292 -16.26957 -15.69036 -15.42917 -14.86481 -14.54015 -14.35505 -14.23099 -14.09320 -13.82592 -13.74177 -13.59778 -13.36033 -13.14775 -13.03489 -12.65681 -12.64223 -12.51193 -12.29644 -12.27291 -12.04094 -11.87453 -11.55460 -11.29723 -11.19651 -10.98787 -10.93060 -10.82242 -10.65528 -10.57231 -10.47449 -10.24872 -10.02016 -9.91106 -9.58725 -9.43393 -8.94080 -8.61577 -8.47625 -7.27898 -5.77075 -3.12523 1.63359 2.38127 2.56647 2.63134 3.11754 3.36070 3.38530 3.44652 4.17144 4.31036 4.42857 4.46882 4.48315 4.58305 4.72233 4.77104 4.84035 4.88810 4.98639 5.01116 5.11072 5.18603 5.22671 5.25017 5.30007 5.36724 5.43724 5.48072 5.53439 5.61742 5.62073 5.66062 5.73401 5.83410 5.85161 5.88990 5.98412 5.98941 6.06277 6.13194 6.17657 6.25537 6.37136 6.42391 6.44716 6.51585 6.80302 7.02053 7.07107 7.47714 7.51655 7.99285 8.16036 8.41911 9.20388 9.92804 10.12737 11.41328 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.002047 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.872139 B =13673.215550 C =14033.758955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.746 5.746 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.080 0.920 15 C -0.120 4.120 16 C 0.096 3.904 17 N -0.618 5.618 18 C 0.533 3.467 19 O -0.533 6.533 20 C -0.058 4.058 21 C 0.107 3.893 22 N -0.284 5.284 23 N -0.469 5.469 24 H 0.437 0.563 25 C 0.084 3.916 26 C -0.221 4.221 27 C -0.042 4.042 28 C -0.120 4.120 29 C -0.112 4.112 30 C -0.057 4.057 31 C 0.116 3.884 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -7.214 -31.664 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.389 5.389 5 C -0.369 4.369 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.158 4.158 16 C -0.027 4.027 17 N -0.353 5.353 18 C 0.321 3.679 19 O -0.409 6.409 20 C -0.099 4.099 21 C -0.060 4.060 22 N -0.107 5.107 23 N -0.176 5.176 24 H 0.280 0.720 25 C -0.045 4.045 26 C -0.232 4.232 27 C -0.080 4.080 28 C -0.157 4.157 29 C -0.150 4.150 30 C -0.096 4.096 31 C -0.006 4.006 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.002 -5.645 -31.905 32.416 hybrid contribution 0.072 -1.683 -0.144 1.691 sum 1.074 -7.328 -32.049 32.894 Atomic orbital electron populations 1.22467 0.98785 1.00981 1.00626 1.20104 0.91954 0.95458 0.84428 0.92365 1.42742 1.79854 1.09287 1.07013 1.19054 1.36720 0.95502 0.85669 0.89227 1.24672 1.01591 0.97412 0.95570 1.69700 1.52717 1.35555 1.00258 0.86560 0.78357 0.86865 0.76796 1.21125 1.21889 1.20345 1.22704 0.95069 1.00485 0.94383 0.90157 1.22619 0.96492 1.04106 0.92547 1.22182 0.85958 1.00324 0.94203 1.48542 1.13944 1.67760 1.05054 1.19923 0.89195 0.77762 0.81057 1.90727 1.25512 1.48550 1.76143 1.19956 0.97764 1.04825 0.87404 1.21174 0.98672 0.91195 0.94926 1.77431 1.20516 1.21745 0.91044 1.45865 1.49005 1.09388 1.13329 0.71982 1.20862 1.00222 0.86052 0.97404 1.19666 1.11530 0.98058 0.93920 1.19986 0.98717 0.90426 0.98920 1.21594 0.99273 1.00690 0.94189 1.21535 1.02244 0.94183 0.97072 1.20362 1.00243 0.94004 0.94960 1.22271 0.92490 0.99786 0.86077 0.94015 0.93571 0.92275 0.80719 0.93109 0.89841 0.89808 0.91423 0.91351 0.87042 0.87405 0.91356 0.91100 0.91326 0.91597 0.91334 0.90987 0.90327 0.89759 0.91177 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.27 37.15 0.34 -2.54 16 2 C 0.19 3.40 2.42 -67.93 -0.16 3.23 16 3 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 4 N -0.75 -16.53 4.78 -53.42 -0.26 -16.79 16 5 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 9 Si 0.88 21.48 27.74 -169.99 -4.71 16.77 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 13 C -0.11 -1.52 2.65 -88.47 -0.23 -1.76 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 15 C -0.12 -1.53 6.28 -24.90 -0.16 -1.69 16 16 C 0.10 0.99 6.48 -3.06 -0.02 0.97 16 17 N -0.62 -7.85 3.33 -170.53 -0.57 -8.42 16 18 C 0.53 7.35 7.84 -10.99 -0.09 7.26 16 19 O -0.53 -9.50 16.29 5.56 0.09 -9.41 16 20 C -0.06 -0.61 5.32 -29.03 -0.15 -0.76 16 21 C 0.11 1.33 5.71 -82.52 -0.47 0.85 16 22 N -0.28 -3.76 12.71 33.59 0.43 -3.34 16 23 N -0.47 -4.69 7.34 33.48 0.25 -4.44 16 24 H 0.44 2.89 8.96 -182.45 -1.64 1.25 16 25 C 0.08 0.79 7.08 -82.33 -0.58 0.21 16 26 C -0.22 -2.41 5.91 -105.06 -0.62 -3.03 16 27 C -0.04 -0.37 6.06 -27.62 -0.17 -0.53 16 28 C -0.12 -0.83 5.90 -26.49 -0.16 -0.98 16 29 C -0.11 -0.60 5.90 -26.49 -0.16 -0.76 16 30 C -0.06 -0.33 6.30 -27.63 -0.17 -0.50 16 31 C 0.12 1.60 5.27 -2.53 -0.01 1.59 16 32 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.36 7.86 5.66 -40.82 -0.23 7.63 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.08 1.14 7.99 -51.93 -0.42 0.72 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 47 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 52 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -35.55 411.53 -11.11 -46.66 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -10.25 Total: 5.93 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.07 Total: -5.09 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.63 Total: -61.06 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.55 -11.11 -46.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.892 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds