Wall clock time and date at job start Wed Apr 1 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47441 * 2 1 4 4 N 1.46505 * 109.46588 * 119.99376 * 2 1 3 5 5 C 1.36940 * 120.00041 * 274.99867 * 4 2 1 6 6 H 1.07996 * 119.99892 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99807 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99886 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00225 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46825 * 89.99877 * 9 7 5 11 11 H 1.48501 * 109.47203 * 209.99748 * 9 7 5 12 12 H 1.48497 * 109.47115 * 329.99809 * 9 7 5 13 13 C 1.52999 * 109.47511 * 239.99016 * 2 1 3 14 14 H 1.08998 * 110.88993 * 304.52566 * 13 2 1 15 15 C 1.55405 * 111.06537 * 68.30574 * 13 2 1 16 16 C 1.54323 * 102.82955 * 153.48916 * 15 13 2 17 17 N 1.47030 * 107.39728 * 337.97362 * 16 15 13 18 18 C 1.34779 * 125.64473 * 178.90084 * 17 16 15 19 19 O 1.21286 * 119.99762 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00298 * 359.97207 * 18 17 16 21 21 C 1.50693 * 109.47105 * 180.02562 * 20 18 17 22 22 N 1.31068 * 125.96621 * 90.03022 * 21 20 18 23 23 N 1.40294 * 108.27484 * 179.97438 * 22 21 20 24 24 H 0.96998 * 126.09032 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81539 * 359.94554 * 23 22 21 26 26 C 1.35747 * 107.84424 * 359.81688 * 25 23 22 27 27 C 1.50843 * 124.11126 * 180.09071 * 26 25 23 28 28 C 1.53360 * 108.37311 * 343.66256 * 27 26 25 29 29 C 1.53112 * 109.50407 * 49.96118 * 28 27 26 30 30 C 1.50826 * 128.03005 * 180.17127 * 25 23 22 31 31 C 1.47424 * 108.70373 * 358.86627 * 17 16 15 32 32 H 1.08997 * 109.46927 * 174.75048 * 1 2 3 33 33 H 1.08998 * 109.47265 * 294.75883 * 1 2 3 34 34 H 1.09006 * 109.46259 * 54.75439 * 1 2 3 35 35 H 0.97002 * 119.99721 * 95.00411 * 4 2 1 36 36 H 0.97002 * 120.00071 * 180.02562 * 8 7 5 37 37 H 1.08995 * 110.69901 * 35.19957 * 15 13 2 38 38 H 1.09001 * 110.85037 * 271.84457 * 15 13 2 39 39 H 1.08999 * 109.88464 * 218.48052 * 16 15 13 40 40 H 1.09004 * 109.88602 * 97.46350 * 16 15 13 41 41 H 1.08996 * 109.47177 * 300.00197 * 20 18 17 42 42 H 1.09001 * 109.46675 * 60.00246 * 20 18 17 43 43 H 1.08996 * 109.68468 * 103.38835 * 27 26 25 44 44 H 1.09000 * 109.67946 * 223.90890 * 27 26 25 45 45 H 1.09004 * 109.46616 * 169.96591 * 28 27 26 46 46 H 1.09001 * 109.46900 * 289.94880 * 28 27 26 47 47 H 1.09003 * 109.46643 * 49.72538 * 29 28 27 48 48 H 1.09001 * 109.46153 * 169.70321 * 29 28 27 49 49 H 1.08994 * 109.68219 * 283.14021 * 30 25 23 50 50 H 1.09001 * 109.68036 * 43.69690 * 30 25 23 51 51 H 1.09001 * 110.36382 * 142.97091 * 31 17 16 52 52 H 1.09000 * 110.36290 * 265.28521 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8918 1.0405 2.4243 7 6 2.6111 -0.6617 3.5094 8 7 2.7363 -0.0051 4.6433 9 14 3.0552 -2.4742 3.4258 10 1 4.4881 -2.6164 3.0626 11 1 2.8150 -3.1043 4.7489 12 1 2.2157 -3.1427 2.3994 13 6 2.0401 -0.7214 -1.2491 14 1 1.6256 -1.7275 -1.3134 15 6 1.7210 0.0926 -2.5338 16 6 2.8265 -0.3609 -3.5103 17 7 3.9376 -0.8861 -2.7032 18 6 5.0855 -1.4005 -3.1873 19 8 5.9373 -1.8058 -2.4251 20 6 5.3104 -1.4722 -4.6757 21 6 6.6599 -2.0839 -4.9509 22 7 6.9079 -3.3607 -5.1122 23 7 8.2821 -3.5156 -5.3485 24 1 8.7444 -4.3542 -5.5024 25 6 8.8433 -2.2954 -5.3243 26 6 7.8604 -1.3902 -5.0847 27 6 8.0869 0.0978 -4.9847 28 6 9.5870 0.3461 -4.7849 29 6 10.3790 -0.4335 -5.8382 30 6 10.2937 -1.9355 -5.5281 31 6 3.5885 -0.7561 -1.2768 32 1 -0.3633 -1.0233 -0.0940 33 1 -0.3634 0.4304 0.9332 34 1 -0.3632 0.5931 -0.8394 35 1 2.2490 -1.6317 1.1528 36 1 3.0595 -0.4623 5.4354 37 1 1.7931 1.1627 -2.3397 38 1 0.7351 -0.1646 -2.9212 39 1 3.1679 0.4874 -4.1036 40 1 2.4436 -1.1422 -4.1669 41 1 4.5338 -2.0865 -5.1314 42 1 5.2735 -0.4678 -5.0975 43 1 7.7535 0.5824 -5.9023 44 1 7.5319 0.4973 -4.1359 45 1 9.7959 1.4109 -4.8881 46 1 9.8810 0.0132 -3.7894 47 1 9.9617 -0.2366 -6.8257 48 1 11.4221 -0.1181 -5.8152 49 1 10.8597 -2.1671 -4.6258 50 1 10.6969 -2.4988 -6.3697 51 1 3.9590 -1.6142 -0.7159 52 1 3.9961 0.1691 -0.8694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754791223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:48 Heat of formation + Delta-G solvation = 34.880294 kcal Electronic energy + Delta-G solvation = -30729.806557 eV Core-core repulsion = 26730.190962 eV Total energy + Delta-G solvation = -3999.615595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76634 -39.91533 -37.81172 -36.73381 -35.30448 -33.68365 -32.45028 -30.94554 -30.32281 -29.59314 -29.01040 -28.83973 -27.71689 -23.82990 -23.80796 -23.39885 -22.32874 -21.37087 -20.54605 -19.81973 -19.02690 -18.81171 -17.72677 -17.60951 -17.02058 -16.09575 -15.69053 -15.28421 -14.85819 -14.52735 -14.26139 -14.19094 -14.05960 -13.93341 -13.76706 -13.61369 -13.28727 -13.10005 -12.83644 -12.74803 -12.54575 -12.35132 -12.25995 -12.18884 -11.97460 -11.72715 -11.66384 -11.22254 -11.13067 -10.97741 -10.86368 -10.81845 -10.59226 -10.58392 -10.54126 -10.23119 -9.95802 -9.85295 -9.54469 -9.35658 -8.90150 -8.51107 -8.41038 -7.24270 -5.73556 -3.08962 1.69989 2.44924 2.63320 2.73606 3.20259 3.43052 3.46809 3.51642 4.23681 4.36737 4.47824 4.51638 4.55663 4.63797 4.65122 4.79764 4.90229 4.91699 4.98463 5.04763 5.17229 5.23317 5.25839 5.29000 5.35917 5.41438 5.46162 5.50053 5.58677 5.59581 5.68113 5.70953 5.80331 5.82420 5.86545 5.91433 6.02968 6.06367 6.09176 6.13015 6.23809 6.29820 6.34464 6.43160 6.48979 6.54787 6.79186 7.01467 7.13553 7.54098 7.61664 8.02054 8.27577 8.45535 9.23918 9.96917 10.15997 11.44793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002522 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.456112 B =11098.065380 C =11985.868216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.079 0.921 15 C -0.123 4.123 16 C 0.099 3.901 17 N -0.621 5.621 18 C 0.530 3.470 19 O -0.527 6.527 20 C -0.056 4.056 21 C 0.106 3.894 22 N -0.285 5.285 23 N -0.469 5.469 24 H 0.436 0.564 25 C 0.084 3.916 26 C -0.221 4.221 27 C -0.042 4.042 28 C -0.121 4.121 29 C -0.112 4.112 30 C -0.057 4.057 31 C 0.119 3.881 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -0.224 -28.653 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.097 0.903 15 C -0.161 4.161 16 C -0.024 4.024 17 N -0.356 5.356 18 C 0.317 3.683 19 O -0.403 6.403 20 C -0.098 4.098 21 C -0.060 4.060 22 N -0.108 5.108 23 N -0.176 5.176 24 H 0.280 0.720 25 C -0.045 4.045 26 C -0.232 4.232 27 C -0.080 4.080 28 C -0.158 4.158 29 C -0.150 4.150 30 C -0.096 4.096 31 C -0.002 4.002 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.741 -1.467 -28.112 29.788 hybrid contribution 0.779 -1.199 0.114 1.434 sum 10.520 -2.667 -27.999 30.028 Atomic orbital electron populations 1.22412 0.98606 1.00523 1.00900 1.20136 0.92057 0.95452 0.84357 0.92375 1.42808 1.79822 1.09405 1.07166 1.19030 1.36915 0.95455 0.85648 0.89177 1.24641 1.01395 0.97348 0.95580 1.69697 1.52696 1.35566 1.00267 0.86617 0.78712 0.86903 0.76724 1.20952 1.21815 1.20353 1.22772 0.94319 1.00136 0.95477 0.90258 1.22700 0.97731 1.00974 0.94700 1.22080 0.87511 0.98324 0.94501 1.48578 1.16756 1.61590 1.08667 1.19934 0.80714 0.77591 0.90047 1.90763 1.42793 1.47096 1.59614 1.19948 0.93139 1.02594 0.94114 1.21173 0.94969 0.90784 0.99067 1.77419 0.91494 1.17813 1.24063 1.45859 1.06349 1.07471 1.57920 0.72000 1.20867 0.96265 0.85716 1.01669 1.19677 0.91521 0.96705 1.15317 1.19983 0.96275 0.90175 1.01567 1.21605 0.94812 1.00028 0.99395 1.21581 1.00656 0.92954 0.99768 1.20411 0.88951 0.97782 1.02452 1.22244 0.94710 1.03019 0.80276 0.93774 0.92136 0.94069 0.80685 0.93104 0.90104 0.89957 0.91416 0.91573 0.87570 0.87105 0.91409 0.91041 0.91328 0.91513 0.91322 0.91016 0.89637 0.90424 0.90511 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.29 37.16 0.35 -2.33 16 2 C 0.19 3.39 2.42 -67.93 -0.16 3.23 16 3 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 4 N -0.75 -17.32 4.56 -53.42 -0.24 -17.57 16 5 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 9 Si 0.88 22.82 27.74 -169.99 -4.71 18.10 16 10 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 13 C -0.11 -1.56 2.61 -88.34 -0.23 -1.79 16 14 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -1.26 5.81 -24.76 -0.14 -1.41 16 16 C 0.10 0.95 6.48 -3.06 -0.02 0.93 16 17 N -0.62 -8.59 3.33 -170.52 -0.57 -9.16 16 18 C 0.53 8.09 7.84 -10.99 -0.09 8.00 16 19 O -0.53 -10.65 16.29 5.55 0.09 -10.56 16 20 C -0.06 -0.63 5.32 -29.04 -0.15 -0.79 16 21 C 0.11 1.42 5.71 -82.53 -0.47 0.95 16 22 N -0.28 -4.06 12.71 33.59 0.43 -3.63 16 23 N -0.47 -5.18 7.34 33.48 0.25 -4.94 16 24 H 0.44 3.34 8.96 -182.45 -1.64 1.70 16 25 C 0.08 0.88 7.08 -82.33 -0.58 0.30 16 26 C -0.22 -2.63 5.91 -105.05 -0.62 -3.25 16 27 C -0.04 -0.40 6.05 -27.63 -0.17 -0.57 16 28 C -0.12 -0.95 5.89 -26.49 -0.16 -1.11 16 29 C -0.11 -0.69 5.92 -26.36 -0.16 -0.84 16 30 C -0.06 -0.39 6.30 -27.51 -0.17 -0.56 16 31 C 0.12 1.97 6.03 -2.53 -0.02 1.96 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.54 7.74 -51.93 -0.40 0.13 16 35 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 36 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 37 H 0.08 0.80 7.99 -51.93 -0.42 0.39 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.11 0.91 8.06 -51.93 -0.42 0.49 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 47 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 52 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -37.27 412.20 -11.11 -48.38 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -10.28 Total: 6.05 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.05 Total: -4.05 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.64 Total: -64.14 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.27 -11.11 -48.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds