Wall clock time and date at job start Wed Apr 1 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47441 * 2 1 4 4 N 1.46505 * 109.46588 * 119.99376 * 2 1 3 5 5 C 1.36940 * 120.00041 * 274.99867 * 4 2 1 6 6 H 1.07996 * 119.99892 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99807 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99886 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00225 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46825 * 89.99877 * 9 7 5 11 11 H 1.48501 * 109.47203 * 209.99748 * 9 7 5 12 12 H 1.48497 * 109.47115 * 329.99809 * 9 7 5 13 13 C 1.52999 * 109.47511 * 239.99016 * 2 1 3 14 14 H 1.08998 * 110.88993 * 304.52566 * 13 2 1 15 15 C 1.55405 * 111.06537 * 68.30574 * 13 2 1 16 16 C 1.54323 * 102.82955 * 153.48916 * 15 13 2 17 17 N 1.47030 * 107.39728 * 337.97362 * 16 15 13 18 18 C 1.34779 * 125.64473 * 178.90084 * 17 16 15 19 19 O 1.21286 * 119.99762 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00298 * 359.97207 * 18 17 16 21 21 C 1.50693 * 109.47105 * 180.02562 * 20 18 17 22 22 N 1.31068 * 125.96621 * 90.03022 * 21 20 18 23 23 N 1.40294 * 108.27484 * 179.97438 * 22 21 20 24 24 H 0.96998 * 126.09032 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81539 * 359.94554 * 23 22 21 26 26 C 1.35747 * 107.84424 * 359.81688 * 25 23 22 27 27 C 1.50843 * 124.11126 * 180.09071 * 26 25 23 28 28 C 1.53360 * 108.37311 * 343.66256 * 27 26 25 29 29 C 1.53112 * 109.50407 * 49.96118 * 28 27 26 30 30 C 1.50826 * 128.03005 * 180.17127 * 25 23 22 31 31 C 1.47424 * 108.70373 * 358.86627 * 17 16 15 32 32 H 1.08997 * 109.46927 * 174.75048 * 1 2 3 33 33 H 1.08998 * 109.47265 * 294.75883 * 1 2 3 34 34 H 1.09006 * 109.46259 * 54.75439 * 1 2 3 35 35 H 0.97002 * 119.99721 * 95.00411 * 4 2 1 36 36 H 0.97002 * 120.00071 * 180.02562 * 8 7 5 37 37 H 1.08995 * 110.69901 * 35.19957 * 15 13 2 38 38 H 1.09001 * 110.85037 * 271.84457 * 15 13 2 39 39 H 1.08999 * 109.88464 * 218.48052 * 16 15 13 40 40 H 1.09004 * 109.88602 * 97.46350 * 16 15 13 41 41 H 1.08996 * 109.47177 * 300.00197 * 20 18 17 42 42 H 1.09001 * 109.46675 * 60.00246 * 20 18 17 43 43 H 1.08996 * 109.68468 * 103.38835 * 27 26 25 44 44 H 1.09000 * 109.67946 * 223.90890 * 27 26 25 45 45 H 1.09004 * 109.46616 * 169.96591 * 28 27 26 46 46 H 1.09001 * 109.46900 * 289.94880 * 28 27 26 47 47 H 1.09003 * 109.46643 * 49.72538 * 29 28 27 48 48 H 1.09001 * 109.46153 * 169.70321 * 29 28 27 49 49 H 1.08994 * 109.68219 * 283.14021 * 30 25 23 50 50 H 1.09001 * 109.68036 * 43.69690 * 30 25 23 51 51 H 1.09001 * 110.36382 * 142.97091 * 31 17 16 52 52 H 1.09000 * 110.36290 * 265.28521 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8918 1.0405 2.4243 7 6 2.6111 -0.6617 3.5094 8 7 2.7363 -0.0051 4.6433 9 14 3.0552 -2.4742 3.4258 10 1 4.4881 -2.6164 3.0626 11 1 2.8150 -3.1043 4.7489 12 1 2.2157 -3.1427 2.3994 13 6 2.0401 -0.7214 -1.2491 14 1 1.6256 -1.7275 -1.3134 15 6 1.7210 0.0926 -2.5338 16 6 2.8265 -0.3609 -3.5103 17 7 3.9376 -0.8861 -2.7032 18 6 5.0855 -1.4005 -3.1873 19 8 5.9373 -1.8058 -2.4251 20 6 5.3104 -1.4722 -4.6757 21 6 6.6599 -2.0839 -4.9509 22 7 6.9079 -3.3607 -5.1122 23 7 8.2821 -3.5156 -5.3485 24 1 8.7444 -4.3542 -5.5024 25 6 8.8433 -2.2954 -5.3243 26 6 7.8604 -1.3902 -5.0847 27 6 8.0869 0.0978 -4.9847 28 6 9.5870 0.3461 -4.7849 29 6 10.3790 -0.4335 -5.8382 30 6 10.2937 -1.9355 -5.5281 31 6 3.5885 -0.7561 -1.2768 32 1 -0.3633 -1.0233 -0.0940 33 1 -0.3634 0.4304 0.9332 34 1 -0.3632 0.5931 -0.8394 35 1 2.2490 -1.6317 1.1528 36 1 3.0595 -0.4623 5.4354 37 1 1.7931 1.1627 -2.3397 38 1 0.7351 -0.1646 -2.9212 39 1 3.1679 0.4874 -4.1036 40 1 2.4436 -1.1422 -4.1669 41 1 4.5338 -2.0865 -5.1314 42 1 5.2735 -0.4678 -5.0975 43 1 7.7535 0.5824 -5.9023 44 1 7.5319 0.4973 -4.1359 45 1 9.7959 1.4109 -4.8881 46 1 9.8810 0.0132 -3.7894 47 1 9.9617 -0.2366 -6.8257 48 1 11.4221 -0.1181 -5.8152 49 1 10.8597 -2.1671 -4.6258 50 1 10.6969 -2.4988 -6.3697 51 1 3.9590 -1.6142 -0.7159 52 1 3.9961 0.1691 -0.8694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754791223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:46 Heat of formation + Delta-G solvation = 9.066026 kcal Electronic energy + Delta-G solvation = -30730.925947 eV Core-core repulsion = 26730.190962 eV Total energy + Delta-G solvation = -4000.734986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.59209 -41.05429 -39.08887 -37.37654 -36.88641 -34.60617 -34.26703 -32.45370 -31.19526 -30.40271 -30.28877 -29.93675 -28.76565 -25.67288 -24.58455 -24.46131 -22.99676 -22.71279 -21.55466 -21.24975 -19.98482 -19.67977 -19.47505 -18.51543 -18.17475 -17.33651 -16.68165 -16.56686 -16.12978 -15.94001 -15.49849 -15.08968 -15.01743 -14.81115 -14.68897 -14.59336 -14.44706 -14.25001 -13.99046 -13.94925 -13.77292 -13.69929 -13.54505 -13.20306 -12.98757 -12.94831 -12.84146 -12.68919 -12.40432 -12.11864 -11.92438 -11.77813 -11.74922 -11.70891 -11.65713 -11.47223 -11.41186 -11.37211 -11.06758 -10.99795 -10.28869 -9.64805 -9.30465 -9.22978 -8.03459 -5.33898 0.85120 1.31670 1.36313 1.40375 1.53564 1.59712 1.87773 2.18668 2.45057 3.29118 3.36446 3.49746 3.65401 3.69127 3.74836 3.87226 3.90849 4.01944 4.05384 4.14540 4.28933 4.34456 4.38550 4.45667 4.50695 4.53915 4.60650 4.63750 4.64847 4.74953 4.77084 4.78425 4.85631 4.91929 4.99732 5.03223 5.06367 5.09329 5.14640 5.23582 5.26365 5.27926 5.34913 5.39684 5.43226 5.48358 5.64463 5.68283 5.79390 6.22106 6.42058 6.54310 6.68057 7.08484 7.13765 7.86968 8.02582 9.18514 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002522 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.456112 B =11098.065380 C =11985.868216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.049 0.951 4 N -0.755 5.755 5 C -0.214 4.214 6 H 0.063 0.937 7 C -0.063 4.063 8 N -0.984 5.984 9 Si 0.941 3.059 10 H -0.293 1.293 11 H -0.294 1.294 12 H -0.253 1.253 13 C -0.097 4.097 14 H 0.083 0.917 15 C -0.112 4.112 16 C 0.093 3.907 17 N -0.617 5.617 18 C 0.524 3.476 19 O -0.591 6.591 20 C -0.045 4.045 21 C 0.087 3.913 22 N -0.328 5.328 23 N -0.467 5.467 24 H 0.447 0.553 25 C 0.086 3.914 26 C -0.247 4.247 27 C -0.040 4.040 28 C -0.122 4.122 29 C -0.107 4.107 30 C -0.056 4.056 31 C 0.119 3.881 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.360 0.640 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.036 0.964 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -0.188 -33.035 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.398 5.398 5 C -0.346 4.346 6 H 0.081 0.919 7 C -0.254 4.254 8 N -0.635 5.635 9 Si 0.770 3.230 10 H -0.220 1.220 11 H -0.221 1.221 12 H -0.178 1.178 13 C -0.117 4.117 14 H 0.102 0.898 15 C -0.150 4.150 16 C -0.028 4.028 17 N -0.351 5.351 18 C 0.314 3.686 19 O -0.471 6.471 20 C -0.086 4.086 21 C -0.078 4.078 22 N -0.151 5.151 23 N -0.176 5.176 24 H 0.293 0.707 25 C -0.044 4.044 26 C -0.258 4.258 27 C -0.078 4.078 28 C -0.160 4.160 29 C -0.144 4.144 30 C -0.095 4.095 31 C -0.004 4.004 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.192 0.808 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.107 0.893 50 H 0.122 0.878 51 H 0.055 0.945 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.173 -1.425 -32.591 33.887 hybrid contribution 0.950 -1.115 1.427 2.045 sum 10.123 -2.540 -31.164 32.865 Atomic orbital electron populations 1.22253 0.96431 1.01527 1.01139 1.20435 0.93424 0.94941 0.83823 0.93293 1.42916 1.80078 1.09412 1.07413 1.19032 1.33929 0.94447 0.87147 0.91866 1.25338 1.02995 1.01513 0.95542 1.69852 1.55289 1.37311 1.01088 0.85605 0.78011 0.82350 0.76989 1.21978 1.22084 1.17819 1.22604 0.92273 1.00848 0.95998 0.89821 1.22758 0.99689 1.00576 0.91952 1.22455 0.85743 1.00369 0.94206 1.48653 1.17562 1.60985 1.07893 1.20712 0.80067 0.76375 0.91495 1.90729 1.45001 1.49934 1.61419 1.20020 0.92995 1.04814 0.90821 1.21595 0.96326 0.90873 0.99044 1.77309 0.93308 1.18705 1.25817 1.45917 1.05694 1.08439 1.57508 0.70677 1.21491 0.97797 0.85135 0.99956 1.20095 0.91577 0.98108 1.16048 1.20017 0.97267 0.88938 1.01601 1.21625 0.94012 1.01325 0.99002 1.21588 1.01598 0.91965 0.99286 1.20593 0.86544 0.98741 1.03643 1.22006 0.96320 1.00073 0.81974 0.93112 0.95144 0.89807 0.80770 0.93547 0.89443 0.86683 0.88211 0.88708 0.85419 0.83699 0.89387 0.93112 0.89781 0.93572 0.90535 0.88915 0.89348 0.87830 0.94536 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.29 71.98 0.67 -3.98 16 2 C 0.18 6.32 2.42 44.99 0.11 6.43 16 3 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 4 N -0.76 -35.21 4.56 -322.93 -1.47 -36.69 16 5 C -0.21 -12.29 10.41 84.03 0.87 -11.41 16 6 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 7 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 8 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 9 Si 0.94 48.58 27.74 68.60 1.90 50.48 16 10 H -0.29 -15.43 7.11 99.48 0.71 -14.73 16 11 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 12 H -0.25 -11.90 6.52 99.48 0.65 -11.25 16 13 C -0.10 -2.64 2.61 -9.32 -0.02 -2.66 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.11 -1.80 5.81 31.87 0.19 -1.62 16 16 C 0.09 1.38 6.48 86.73 0.56 1.94 16 17 N -0.62 -16.27 3.33 -811.77 -2.70 -18.97 16 18 C 0.52 15.85 7.84 87.66 0.69 16.54 16 19 O -0.59 -24.99 16.29 -3.05 -0.05 -25.04 16 20 C -0.05 -0.94 5.32 29.10 0.15 -0.79 16 21 C 0.09 2.28 5.71 42.93 0.24 2.53 16 22 N -0.33 -9.32 12.71 -47.63 -0.61 -9.93 16 23 N -0.47 -10.15 7.34 -47.99 -0.35 -10.50 16 24 H 0.45 6.66 8.96 -213.20 -1.91 4.75 16 25 C 0.09 1.73 7.08 41.64 0.29 2.02 16 26 C -0.25 -5.72 5.91 -20.14 -0.12 -5.84 16 27 C -0.04 -0.72 6.05 30.01 0.18 -0.54 16 28 C -0.12 -1.76 5.89 30.75 0.18 -1.58 16 29 C -0.11 -1.04 5.92 30.84 0.18 -0.85 16 30 C -0.06 -0.65 6.30 30.09 0.19 -0.46 16 31 C 0.12 4.00 6.03 86.85 0.52 4.52 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.83 7.74 -2.38 -0.02 1.81 16 35 H 0.36 16.82 5.66 -92.71 -0.52 16.30 16 36 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 37 H 0.09 1.35 7.99 -2.39 -0.02 1.33 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.15 1.90 8.06 -2.39 -0.02 1.88 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.05 0.84 8.11 -2.39 -0.02 0.82 16 47 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 48 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 52 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 Total: -1.00 -88.31 412.20 0.81 -87.50 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -1.57 Total: 26.73 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.36 Total: 0.90 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -4.83 Total: -140.58 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.90 Total: 50.48 kcal Total: -88.31 0.81 -87.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.566 kcal (2) G-P(sol) polarization free energy of solvation -88.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds