Wall clock time and date at job start Wed Apr 1 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46501 * 109.46906 * 239.99486 * 2 1 3 5 5 C 1.36930 * 119.99947 * 85.00518 * 4 2 1 6 6 H 1.08002 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00506 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99660 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00711 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47312 * 89.99657 * 9 7 5 11 11 H 1.48499 * 109.47439 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.46740 * 330.00088 * 9 7 5 13 13 C 1.53006 * 109.47142 * 119.99893 * 2 1 3 14 14 H 1.08994 * 110.91341 * 57.06403 * 13 2 1 15 15 C 1.55161 * 111.00016 * 293.16610 * 13 2 1 16 16 C 1.54326 * 102.94145 * 206.42295 * 15 13 2 17 17 N 1.47027 * 107.27116 * 22.19231 * 16 15 13 18 18 C 1.34774 * 125.64811 * 181.09094 * 17 16 15 19 19 O 1.21281 * 119.99554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00126 * 359.96519 * 18 17 16 21 21 C 1.50701 * 109.46970 * 179.97438 * 20 18 17 22 22 N 1.31065 * 125.96306 * 90.02403 * 21 20 18 23 23 N 1.40297 * 108.27138 * 179.97438 * 22 21 20 24 24 H 0.96992 * 126.09269 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81506 * 359.95255 * 23 22 21 26 26 C 1.35753 * 107.84635 * 359.81136 * 25 23 22 27 27 C 1.50841 * 124.11397 * 180.09237 * 26 25 23 28 28 C 1.53371 * 108.37234 * 343.66330 * 27 26 25 29 29 C 1.53113 * 109.50315 * 49.96046 * 28 27 26 30 30 C 1.50833 * 128.03275 * 180.17071 * 25 23 22 31 31 C 1.47421 * 108.70114 * 1.06363 * 17 16 15 32 32 H 1.09006 * 109.46695 * 305.27084 * 1 2 3 33 33 H 1.08997 * 109.47165 * 65.26382 * 1 2 3 34 34 H 1.08996 * 109.47347 * 185.26985 * 1 2 3 35 35 H 0.97003 * 120.00111 * 265.00043 * 4 2 1 36 36 H 0.96996 * 120.00122 * 179.97438 * 8 7 5 37 37 H 1.08995 * 110.72103 * 324.78888 * 15 13 2 38 38 H 1.09004 * 110.71852 * 88.06066 * 15 13 2 39 39 H 1.09001 * 109.88273 * 141.61119 * 16 15 13 40 40 H 1.09006 * 109.88367 * 262.62453 * 16 15 13 41 41 H 1.09003 * 109.47133 * 299.99865 * 20 18 17 42 42 H 1.09000 * 109.47140 * 59.99693 * 20 18 17 43 43 H 1.08999 * 109.68569 * 103.38820 * 27 26 25 44 44 H 1.08994 * 109.67996 * 223.91156 * 27 26 25 45 45 H 1.09003 * 109.46403 * 169.96651 * 28 27 26 46 46 H 1.08998 * 109.47001 * 289.94837 * 28 27 26 47 47 H 1.08998 * 109.46467 * 49.72005 * 29 28 27 48 48 H 1.09000 * 109.46024 * 169.69756 * 29 28 27 49 49 H 1.09001 * 109.67808 * 283.13766 * 30 25 23 50 50 H 1.08995 * 109.68083 * 43.69290 * 30 25 23 51 51 H 1.09004 * 110.36726 * 217.03587 * 31 17 16 52 52 H 1.09000 * 110.37487 * 94.70694 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9388 -3.4496 9 14 2.7901 0.2696 -5.1183 10 1 4.1520 0.8556 -5.2032 11 1 2.5804 -0.6621 -6.2554 12 1 1.7793 1.3560 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6478 -1.7369 1.2995 15 6 1.6881 0.0750 2.5337 16 6 2.7881 -0.3625 3.5238 17 7 3.9215 -0.8552 2.7274 18 6 5.0738 -1.3487 3.2225 19 8 5.9443 -1.7285 2.4683 20 6 5.2806 -1.4283 4.7130 21 6 6.6394 -2.0128 5.0011 22 7 7.7536 -1.3372 5.1424 23 7 8.7899 -2.2470 5.4009 24 1 9.7225 -2.0244 5.5471 25 6 8.2602 -3.4814 5.4102 26 6 6.9291 -3.3648 5.1701 27 6 5.9762 -4.5321 5.1027 28 6 6.7968 -5.8169 4.9351 29 6 7.9082 -5.8546 5.9876 30 6 8.9653 -4.7935 5.6473 31 6 3.5884 -0.7207 1.2976 32 1 -0.3633 0.5935 0.8391 33 1 -0.3633 0.4300 -0.9333 34 1 -0.3634 -1.0233 0.0944 35 1 2.2490 -1.6319 -1.1525 36 1 3.2495 -2.3961 -4.2415 37 1 1.7402 1.1479 2.3487 38 1 0.7021 -0.2062 2.9037 39 1 3.1020 0.4882 4.1287 40 1 2.4119 -1.1569 4.1685 41 1 5.2161 -0.4286 5.1427 42 1 4.5116 -2.0632 5.1531 43 1 5.3948 -4.5851 6.0232 44 1 5.3061 -4.4102 4.2518 45 1 6.1465 -6.6824 5.0625 46 1 7.2389 -5.8383 3.9390 47 1 7.4844 -5.6507 6.9709 48 1 8.3729 -6.8405 5.9898 49 1 9.5147 -5.0821 4.7512 50 1 9.6552 -4.6932 6.4852 51 1 3.9856 -1.5653 0.7344 52 1 3.9799 0.2170 0.9033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754791224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:53 Heat of formation + Delta-G solvation = 31.124358 kcal Electronic energy + Delta-G solvation = -30653.361005 eV Core-core repulsion = 26653.582540 eV Total energy + Delta-G solvation = -3999.778464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.70778 -39.80985 -37.69154 -36.67927 -35.12132 -33.61799 -32.43700 -30.76416 -30.17863 -29.53256 -28.90822 -28.35667 -27.59781 -23.93535 -23.75677 -23.36395 -22.27438 -21.48602 -20.46415 -19.60233 -18.96333 -18.71619 -17.66287 -17.27094 -16.78871 -16.08379 -15.55554 -15.21627 -14.80486 -14.40272 -14.30871 -14.12340 -13.97011 -13.79521 -13.62347 -13.52524 -13.23101 -13.02740 -13.01239 -12.63501 -12.49965 -12.19965 -12.15119 -12.06236 -11.83019 -11.60855 -11.29873 -11.17221 -11.07671 -10.85111 -10.81052 -10.73018 -10.56224 -10.52743 -10.46875 -10.18097 -9.87819 -9.76738 -9.58194 -9.28519 -8.87091 -8.40144 -8.35289 -6.91727 -5.71427 -3.00307 1.75557 2.51623 2.68918 2.83430 3.30248 3.47270 3.52108 3.53765 4.29065 4.42530 4.54333 4.57142 4.60593 4.67908 4.75263 4.88226 4.96142 5.02696 5.06453 5.13634 5.22919 5.30764 5.32283 5.37839 5.41749 5.48878 5.55666 5.59964 5.64374 5.72214 5.73739 5.85828 5.93066 5.94246 5.97201 5.98157 6.12014 6.13014 6.18746 6.21446 6.40118 6.43263 6.45247 6.55397 6.63969 6.68335 6.89055 7.11372 7.19045 7.59826 7.72733 7.74463 8.37990 8.46651 9.57954 10.15142 10.49497 11.51096 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.002372 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.011152 B =11803.392074 C =12716.187721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.048 0.952 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.099 3.901 17 N -0.620 5.620 18 C 0.530 3.470 19 O -0.526 6.526 20 C -0.057 4.057 21 C 0.107 3.893 22 N -0.285 5.285 23 N -0.469 5.469 24 H 0.436 0.564 25 C 0.084 3.916 26 C -0.220 4.220 27 C -0.042 4.042 28 C -0.121 4.121 29 C -0.111 4.111 30 C -0.057 4.057 31 C 0.122 3.878 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -4.678 25.980 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.163 4.163 16 C -0.024 4.024 17 N -0.356 5.356 18 C 0.317 3.683 19 O -0.402 6.402 20 C -0.098 4.098 21 C -0.059 4.059 22 N -0.108 5.108 23 N -0.176 5.176 24 H 0.280 0.720 25 C -0.046 4.046 26 C -0.232 4.232 27 C -0.080 4.080 28 C -0.158 4.158 29 C -0.149 4.149 30 C -0.096 4.096 31 C 0.000 4.000 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.101 0.899 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.486 -3.633 25.452 26.515 hybrid contribution 0.344 -0.342 -0.929 1.048 sum 6.830 -3.975 24.523 25.765 Atomic orbital electron populations 1.22439 0.99119 1.00490 1.00333 1.20162 0.91873 0.95154 0.85412 0.93362 1.42416 1.78145 1.10723 1.05275 1.19191 1.36568 0.93796 0.87298 0.91256 1.24728 1.02192 0.95950 0.98020 1.69659 1.50785 1.08632 1.28853 0.86231 0.77770 0.78582 0.83848 1.21776 1.21858 1.20839 1.22675 0.94220 1.00160 0.95109 0.90145 1.22673 0.97649 1.01008 0.94940 1.22069 0.87112 0.98577 0.94645 1.48588 1.15575 1.62634 1.08771 1.19903 0.80892 0.77628 0.89920 1.90765 1.41662 1.47542 1.60188 1.19956 0.92352 1.03339 0.94191 1.21180 0.93750 0.92038 0.98954 1.77416 0.94714 1.14772 1.23901 1.45852 1.10202 1.03785 1.57790 0.72030 1.20862 0.94050 0.87922 1.01730 1.19675 0.93894 0.94405 1.15180 1.19985 0.95778 0.90632 1.01634 1.21606 0.97279 0.97508 0.99448 1.21579 0.95896 0.97796 0.99679 1.20408 0.97630 0.89249 1.02286 1.22227 0.94889 1.03025 0.79836 0.94439 0.92630 0.93654 0.78265 0.93551 0.90396 0.90089 0.91656 0.91558 0.87623 0.87183 0.91441 0.90989 0.91348 0.91479 0.91350 0.91044 0.89639 0.90460 0.89919 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.27 37.16 0.34 -2.43 16 2 C 0.18 3.46 2.41 -67.93 -0.16 3.30 16 3 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 4 N -0.72 -17.74 4.80 -53.42 -0.26 -18.00 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C -0.10 -1.57 2.62 -88.46 -0.23 -1.80 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.39 5.71 -24.89 -0.14 -1.53 16 16 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 17 N -0.62 -9.12 3.33 -170.51 -0.57 -9.69 16 18 C 0.53 8.48 7.84 -10.99 -0.09 8.40 16 19 O -0.53 -11.06 16.29 5.56 0.09 -10.97 16 20 C -0.06 -0.67 5.32 -29.04 -0.15 -0.83 16 21 C 0.11 1.49 5.71 -82.53 -0.47 1.02 16 22 N -0.29 -4.18 12.71 33.59 0.43 -3.76 16 23 N -0.47 -5.36 7.34 33.48 0.25 -5.12 16 24 H 0.44 3.48 8.96 -182.46 -1.64 1.84 16 25 C 0.08 0.91 7.08 -82.33 -0.58 0.33 16 26 C -0.22 -2.73 5.91 -105.05 -0.62 -3.35 16 27 C -0.04 -0.42 6.05 -27.62 -0.17 -0.59 16 28 C -0.12 -1.01 5.89 -26.48 -0.16 -1.17 16 29 C -0.11 -0.73 5.92 -26.36 -0.16 -0.89 16 30 C -0.06 -0.41 6.30 -27.51 -0.17 -0.58 16 31 C 0.12 2.15 6.07 -2.53 -0.02 2.13 16 32 H 0.04 0.51 7.69 -51.93 -0.40 0.11 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 36 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.11 0.97 8.06 -51.93 -0.42 0.55 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 47 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 1.73 8.04 -51.93 -0.42 1.32 16 52 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 LS Contribution 415.25 15.07 6.26 6.26 Total: -1.00 -36.23 415.25 -11.47 -47.70 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -10.32 Total: 7.76 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.04 Total: -4.14 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 0.57 Total: -64.30 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.23 -11.47 -47.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.820 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds