Wall clock time and date at job start Wed Apr 1 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46501 * 109.46906 * 239.99486 * 2 1 3 5 5 C 1.36930 * 119.99947 * 85.00518 * 4 2 1 6 6 H 1.08002 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00506 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99660 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00711 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47312 * 89.99657 * 9 7 5 11 11 H 1.48499 * 109.47439 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.46740 * 330.00088 * 9 7 5 13 13 C 1.53006 * 109.47142 * 119.99893 * 2 1 3 14 14 H 1.08994 * 110.91341 * 57.06403 * 13 2 1 15 15 C 1.55161 * 111.00016 * 293.16610 * 13 2 1 16 16 C 1.54326 * 102.94145 * 206.42295 * 15 13 2 17 17 N 1.47027 * 107.27116 * 22.19231 * 16 15 13 18 18 C 1.34774 * 125.64811 * 181.09094 * 17 16 15 19 19 O 1.21281 * 119.99554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00126 * 359.96519 * 18 17 16 21 21 C 1.50701 * 109.46970 * 179.97438 * 20 18 17 22 22 N 1.31065 * 125.96306 * 90.02403 * 21 20 18 23 23 N 1.40297 * 108.27138 * 179.97438 * 22 21 20 24 24 H 0.96992 * 126.09269 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81506 * 359.95255 * 23 22 21 26 26 C 1.35753 * 107.84635 * 359.81136 * 25 23 22 27 27 C 1.50841 * 124.11397 * 180.09237 * 26 25 23 28 28 C 1.53371 * 108.37234 * 343.66330 * 27 26 25 29 29 C 1.53113 * 109.50315 * 49.96046 * 28 27 26 30 30 C 1.50833 * 128.03275 * 180.17071 * 25 23 22 31 31 C 1.47421 * 108.70114 * 1.06363 * 17 16 15 32 32 H 1.09006 * 109.46695 * 305.27084 * 1 2 3 33 33 H 1.08997 * 109.47165 * 65.26382 * 1 2 3 34 34 H 1.08996 * 109.47347 * 185.26985 * 1 2 3 35 35 H 0.97003 * 120.00111 * 265.00043 * 4 2 1 36 36 H 0.96996 * 120.00122 * 179.97438 * 8 7 5 37 37 H 1.08995 * 110.72103 * 324.78888 * 15 13 2 38 38 H 1.09004 * 110.71852 * 88.06066 * 15 13 2 39 39 H 1.09001 * 109.88273 * 141.61119 * 16 15 13 40 40 H 1.09006 * 109.88367 * 262.62453 * 16 15 13 41 41 H 1.09003 * 109.47133 * 299.99865 * 20 18 17 42 42 H 1.09000 * 109.47140 * 59.99693 * 20 18 17 43 43 H 1.08999 * 109.68569 * 103.38820 * 27 26 25 44 44 H 1.08994 * 109.67996 * 223.91156 * 27 26 25 45 45 H 1.09003 * 109.46403 * 169.96651 * 28 27 26 46 46 H 1.08998 * 109.47001 * 289.94837 * 28 27 26 47 47 H 1.08998 * 109.46467 * 49.72005 * 29 28 27 48 48 H 1.09000 * 109.46024 * 169.69756 * 29 28 27 49 49 H 1.09001 * 109.67808 * 283.13766 * 30 25 23 50 50 H 1.08995 * 109.68083 * 43.69290 * 30 25 23 51 51 H 1.09004 * 110.36726 * 217.03587 * 31 17 16 52 52 H 1.09000 * 110.37487 * 94.70694 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9388 -3.4496 9 14 2.7901 0.2696 -5.1183 10 1 4.1520 0.8556 -5.2032 11 1 2.5804 -0.6621 -6.2554 12 1 1.7793 1.3560 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6478 -1.7369 1.2995 15 6 1.6881 0.0750 2.5337 16 6 2.7881 -0.3625 3.5238 17 7 3.9215 -0.8552 2.7274 18 6 5.0738 -1.3487 3.2225 19 8 5.9443 -1.7285 2.4683 20 6 5.2806 -1.4283 4.7130 21 6 6.6394 -2.0128 5.0011 22 7 7.7536 -1.3372 5.1424 23 7 8.7899 -2.2470 5.4009 24 1 9.7225 -2.0244 5.5471 25 6 8.2602 -3.4814 5.4102 26 6 6.9291 -3.3648 5.1701 27 6 5.9762 -4.5321 5.1027 28 6 6.7968 -5.8169 4.9351 29 6 7.9082 -5.8546 5.9876 30 6 8.9653 -4.7935 5.6473 31 6 3.5884 -0.7207 1.2976 32 1 -0.3633 0.5935 0.8391 33 1 -0.3633 0.4300 -0.9333 34 1 -0.3634 -1.0233 0.0944 35 1 2.2490 -1.6319 -1.1525 36 1 3.2495 -2.3961 -4.2415 37 1 1.7402 1.1479 2.3487 38 1 0.7021 -0.2062 2.9037 39 1 3.1020 0.4882 4.1287 40 1 2.4119 -1.1569 4.1685 41 1 5.2161 -0.4286 5.1427 42 1 4.5116 -2.0632 5.1531 43 1 5.3948 -4.5851 6.0232 44 1 5.3061 -4.4102 4.2518 45 1 6.1465 -6.6824 5.0625 46 1 7.2389 -5.8383 3.9390 47 1 7.4844 -5.6507 6.9709 48 1 8.3729 -6.8405 5.9898 49 1 9.5147 -5.0821 4.7512 50 1 9.6552 -4.6932 6.4852 51 1 3.9856 -1.5653 0.7344 52 1 3.9799 0.2170 0.9033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754791224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:52 Heat of formation + Delta-G solvation = 6.478550 kcal Electronic energy + Delta-G solvation = -30654.429727 eV Core-core repulsion = 26653.582540 eV Total energy + Delta-G solvation = -4000.847187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.58197 -41.03387 -39.03487 -37.36616 -36.75422 -34.59420 -34.22055 -32.15858 -31.11185 -30.36831 -29.98201 -29.89648 -28.74093 -25.90200 -24.59505 -24.45270 -22.98742 -22.81949 -21.50423 -21.04571 -19.91975 -19.65518 -19.11042 -18.48835 -18.13506 -17.38602 -16.60697 -16.48522 -16.21760 -15.63837 -15.53522 -15.16656 -15.08932 -14.77442 -14.68003 -14.53624 -14.39846 -14.21128 -13.96672 -13.91304 -13.59286 -13.52253 -13.34568 -13.12017 -12.93742 -12.85474 -12.83195 -12.65402 -12.34360 -12.19733 -12.01453 -11.76969 -11.73901 -11.65614 -11.51263 -11.46459 -11.38573 -11.34930 -11.04562 -10.93116 -10.27692 -9.63492 -9.21961 -8.97919 -7.92359 -5.19587 0.85978 1.44584 1.46845 1.54531 1.54656 1.61288 1.88868 2.20474 2.56309 3.40607 3.47403 3.52590 3.66784 3.72407 3.86456 3.90006 3.95078 4.04310 4.12902 4.21208 4.30492 4.35051 4.39349 4.48061 4.51945 4.58974 4.62270 4.65788 4.67899 4.76649 4.77989 4.80352 4.90370 4.94388 5.00485 5.05190 5.07293 5.13376 5.17398 5.24531 5.27292 5.29098 5.38924 5.40746 5.44932 5.49312 5.53949 5.68635 5.68989 6.30100 6.43328 6.56717 6.69006 7.15753 7.35556 8.14428 8.34943 9.31401 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.002372 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.011152 B =11803.392074 C =12716.187721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.177 3.823 3 H 0.044 0.956 4 N -0.739 5.739 5 C -0.230 4.230 6 H 0.076 0.924 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.293 1.293 11 H -0.297 1.297 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.078 0.922 15 C -0.112 4.112 16 C 0.093 3.907 17 N -0.618 5.618 18 C 0.523 3.477 19 O -0.591 6.591 20 C -0.045 4.045 21 C 0.087 3.913 22 N -0.327 5.327 23 N -0.467 5.467 24 H 0.448 0.552 25 C 0.087 3.913 26 C -0.247 4.247 27 C -0.041 4.041 28 C -0.122 4.122 29 C -0.106 4.106 30 C -0.056 4.056 31 C 0.126 3.874 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.033 0.967 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -4.222 29.411 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 H 0.062 0.938 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.094 0.906 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.221 1.221 11 H -0.224 1.224 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.097 0.903 15 C -0.150 4.150 16 C -0.028 4.028 17 N -0.351 5.351 18 C 0.313 3.687 19 O -0.471 6.471 20 C -0.086 4.086 21 C -0.079 4.079 22 N -0.151 5.151 23 N -0.175 5.175 24 H 0.293 0.707 25 C -0.044 4.044 26 C -0.258 4.258 27 C -0.079 4.079 28 C -0.160 4.160 29 C -0.144 4.144 30 C -0.095 4.095 31 C 0.003 3.997 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.123 0.877 51 H 0.051 0.949 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.053 -3.107 28.952 29.554 hybrid contribution 0.798 -0.449 -1.941 2.146 sum 5.851 -3.556 27.011 27.865 Atomic orbital electron populations 1.22258 0.96747 1.01158 1.00971 1.20455 0.93330 0.94645 0.84680 0.93832 1.42668 1.78470 1.10237 1.06460 1.19596 1.34192 0.94081 0.88303 0.90590 1.25525 1.03440 0.96860 1.01471 1.69828 1.52997 1.10284 1.29201 0.85217 0.77681 0.77569 0.79821 1.22111 1.22390 1.19051 1.22493 0.91989 1.00620 0.96044 0.90331 1.22723 0.99647 1.00649 0.92018 1.22459 0.85133 1.00813 0.94374 1.48670 1.16583 1.62024 1.07838 1.20740 0.80173 0.76326 0.91503 1.90730 1.43938 1.50419 1.62061 1.20018 0.92623 1.05330 0.90623 1.21586 0.94286 0.92959 0.99029 1.77305 0.95725 1.16471 1.25622 1.45907 1.10489 1.03804 1.57309 0.70650 1.21493 0.94042 0.88852 0.99968 1.20088 0.95168 0.94593 1.15953 1.20020 0.95512 0.90727 1.01615 1.21627 0.98068 0.97216 0.99065 1.21585 0.95034 0.98616 0.99156 1.20595 0.98085 0.87319 1.03498 1.21908 0.96607 0.99543 0.81626 0.90010 0.94980 0.93679 0.79939 0.94350 0.89664 0.86649 0.88715 0.88163 0.85381 0.83729 0.89328 0.93270 0.89786 0.93639 0.90487 0.88868 0.89359 0.87740 0.94878 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.27 71.98 0.67 -4.16 16 2 C 0.18 6.58 2.41 44.99 0.11 6.69 16 3 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 4 N -0.74 -37.38 4.80 -322.93 -1.55 -38.93 16 5 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 6 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 8 N -0.97 -62.01 13.06 21.65 0.28 -61.72 16 9 Si 0.97 47.93 29.55 68.60 2.03 49.96 16 10 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 C -0.09 -2.76 2.62 -9.40 -0.02 -2.78 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.11 -2.06 5.71 31.78 0.18 -1.88 16 16 C 0.09 1.58 6.49 86.73 0.56 2.14 16 17 N -0.62 -17.91 3.33 -811.77 -2.70 -20.61 16 18 C 0.52 17.07 7.84 87.66 0.69 17.76 16 19 O -0.59 -26.61 16.29 -3.03 -0.05 -26.66 16 20 C -0.04 -1.01 5.32 29.10 0.15 -0.85 16 21 C 0.09 2.41 5.71 42.93 0.24 2.65 16 22 N -0.33 -9.73 12.71 -47.63 -0.61 -10.33 16 23 N -0.47 -10.61 7.34 -47.98 -0.35 -10.97 16 24 H 0.45 7.05 8.96 -213.20 -1.91 5.14 16 25 C 0.09 1.83 7.08 41.64 0.29 2.12 16 26 C -0.25 -6.05 5.91 -20.14 -0.12 -6.17 16 27 C -0.04 -0.79 6.05 30.02 0.18 -0.61 16 28 C -0.12 -1.92 5.89 30.76 0.18 -1.74 16 29 C -0.11 -1.13 5.92 30.83 0.18 -0.95 16 30 C -0.06 -0.70 6.30 30.09 0.19 -0.51 16 31 C 0.13 4.68 6.07 86.86 0.53 5.20 16 32 H 0.08 1.89 7.69 -2.38 -0.02 1.87 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.37 20.57 7.80 -92.71 -0.72 19.85 16 36 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.14 2.14 8.06 -2.39 -0.02 2.12 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 0.90 8.11 -2.39 -0.02 0.88 16 47 H 0.08 0.73 8.11 -2.39 -0.02 0.71 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.03 1.52 8.04 -2.38 -0.02 1.50 16 52 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 Total: -1.00 -86.52 415.25 0.66 -85.86 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -1.71 Total: 32.95 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.32 Total: 0.46 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -4.93 Total: -142.56 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -86.52 0.66 -85.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.336 kcal (2) G-P(sol) polarization free energy of solvation -86.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds