Wall clock time and date at job start Wed Apr 1 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47389 * 60.00084 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47026 * 300.00519 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09000 * 110.88398 * 63.88175 * 13 2 1 15 15 C 1.55154 * 111.00855 * 187.80572 * 13 2 1 16 16 C 1.54328 * 102.94482 * 153.57938 * 15 13 2 17 17 N 1.47021 * 107.26855 * 337.80751 * 16 15 13 18 18 C 1.34778 * 125.64754 * 178.97763 * 17 16 15 19 19 O 1.21278 * 119.99921 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00091 * 359.95928 * 18 17 16 21 21 C 1.50696 * 109.47419 * 179.97438 * 20 18 17 22 22 N 1.31073 * 125.95919 * 90.01710 * 21 20 18 23 23 N 1.40291 * 108.26798 * 180.02562 * 22 21 20 24 24 H 0.97006 * 126.09086 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81967 * 359.95499 * 23 22 21 26 26 C 1.35752 * 107.84417 * 359.81173 * 25 23 22 27 27 C 1.50833 * 124.11447 * 180.08834 * 26 25 23 28 28 C 1.53364 * 108.37428 * 343.66920 * 27 26 25 29 29 C 1.53111 * 109.50599 * 49.95829 * 28 27 26 30 30 C 1.50830 * 128.03502 * 180.17144 * 25 23 22 31 31 C 1.47431 * 108.70458 * 358.93835 * 17 16 15 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 34 34 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 35 35 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 36 36 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 37 37 H 1.09004 * 110.71981 * 271.93968 * 15 13 2 38 38 H 1.08997 * 110.71930 * 35.21428 * 15 13 2 39 39 H 1.09000 * 109.87788 * 218.39141 * 16 15 13 40 40 H 1.08995 * 110.01086 * 97.29357 * 16 15 13 41 41 H 1.09003 * 109.46984 * 299.99745 * 20 18 17 42 42 H 1.08999 * 109.47159 * 59.99352 * 20 18 17 43 43 H 1.09004 * 109.68371 * 103.39282 * 27 26 25 44 44 H 1.09000 * 109.68360 * 223.91288 * 27 26 25 45 45 H 1.09004 * 109.46431 * 169.96141 * 28 27 26 46 46 H 1.08999 * 109.46892 * 289.94431 * 28 27 26 47 47 H 1.08996 * 109.46492 * 49.72256 * 29 28 27 48 48 H 1.08999 * 109.46764 * 169.70931 * 29 28 27 49 49 H 1.09004 * 109.68166 * 283.13861 * 30 25 23 50 50 H 1.08998 * 109.68142 * 43.68984 * 30 25 23 51 51 H 1.08997 * 110.36583 * 265.29358 * 31 17 16 52 52 H 1.09004 * 110.45648 * 143.01214 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 3.7465 1.3928 -4.9362 11 1 3.3004 -0.6482 -6.1680 12 1 1.4692 0.8069 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 1.7469 -1.7709 1.2388 15 6 3.5783 -0.5738 1.3875 16 6 3.8036 -0.7111 2.9081 17 7 2.5331 -0.3787 3.5692 18 6 2.3105 -0.3989 4.8983 19 8 1.2180 -0.1040 5.3347 20 6 3.4189 -0.7882 5.8421 21 6 2.9143 -0.7300 7.2609 22 7 2.3560 -1.7156 7.9202 23 7 2.0286 -1.2559 9.2046 24 1 1.6037 -1.7741 9.9060 25 6 2.4088 0.0296 9.2903 26 6 2.9646 0.3791 8.1021 27 6 3.5193 1.7484 7.7979 28 6 2.9874 2.7300 8.8493 29 6 3.2181 2.1545 10.2492 30 6 2.2758 0.9615 10.4688 31 6 1.5433 -0.0188 2.5375 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 0.5139 0.8900 35 1 2.2490 -1.6317 -1.1525 36 1 3.2490 -2.3961 -4.2418 37 1 4.0920 -1.3697 0.8482 38 1 3.9051 0.4048 1.0361 39 1 4.5817 -0.0198 3.2314 40 1 4.0917 -1.7337 3.1516 41 1 3.7502 -1.8015 5.6152 42 1 4.2546 -0.0981 5.7255 43 1 4.6083 1.7208 7.8390 44 1 3.1973 2.0627 6.8051 45 1 3.5120 3.6810 8.7566 46 1 1.9202 2.8872 8.6925 47 1 4.2539 1.8280 10.3415 48 1 3.0109 2.9211 10.9958 49 1 1.2446 1.3053 10.5504 50 1 2.5631 0.4411 11.3825 51 1 1.5193 1.0616 2.3954 52 1 0.5549 -0.3866 2.8131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754791225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:59 Heat of formation + Delta-G solvation = 30.144458 kcal Electronic energy + Delta-G solvation = -30362.035689 eV Core-core repulsion = 26362.214733 eV Total energy + Delta-G solvation = -3999.820956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.79493 -39.91366 -37.75254 -36.77177 -35.16278 -33.71131 -32.43569 -30.83029 -30.20088 -29.61858 -29.28631 -28.45504 -27.14701 -24.46977 -23.84564 -23.08782 -22.36259 -21.41792 -20.60330 -19.58688 -19.05352 -18.81257 -17.75212 -17.31872 -16.90258 -16.18471 -15.72342 -15.27782 -14.84026 -14.51547 -14.22760 -14.14294 -14.04294 -13.85337 -13.72939 -13.41511 -13.32447 -13.12758 -12.96017 -12.61325 -12.55567 -12.44957 -12.26685 -12.12924 -11.94774 -11.70293 -11.26290 -11.19878 -11.17599 -10.90347 -10.86216 -10.69756 -10.60921 -10.55301 -10.36516 -10.21289 -9.95827 -9.83304 -9.62852 -9.38541 -8.90065 -8.53607 -8.44169 -6.95535 -5.76035 -3.04386 1.67205 2.42530 2.60686 2.69471 3.19074 3.44077 3.49073 3.49540 4.20470 4.34297 4.46416 4.51281 4.52920 4.62111 4.81726 4.84906 4.87643 4.97566 5.05780 5.12797 5.15859 5.22533 5.27580 5.32458 5.37222 5.40426 5.53698 5.55337 5.57276 5.64663 5.73115 5.76405 5.87814 5.89886 5.95163 6.01383 6.02401 6.09252 6.10736 6.24604 6.28161 6.40853 6.45950 6.50679 6.60852 6.67048 6.89724 7.10748 7.12169 7.51776 7.59676 7.70495 8.22733 8.42509 9.53824 10.11294 10.46331 11.46486 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.001878 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.007914 B =14909.100863 C =15118.305763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.096 3.904 17 N -0.617 5.617 18 C 0.533 3.467 19 O -0.535 6.535 20 C -0.058 4.058 21 C 0.107 3.893 22 N -0.284 5.284 23 N -0.469 5.469 24 H 0.436 0.564 25 C 0.083 3.917 26 C -0.221 4.221 27 C -0.042 4.042 28 C -0.120 4.120 29 C -0.112 4.112 30 C -0.057 4.057 31 C 0.115 3.885 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 5.917 29.342 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.027 4.027 17 N -0.352 5.352 18 C 0.320 3.680 19 O -0.411 6.411 20 C -0.100 4.100 21 C -0.059 4.059 22 N -0.107 5.107 23 N -0.176 5.176 24 H 0.280 0.720 25 C -0.046 4.046 26 C -0.232 4.232 27 C -0.080 4.080 28 C -0.158 4.158 29 C -0.150 4.150 30 C -0.096 4.096 31 C -0.007 4.007 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.096 0.904 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.677 4.968 29.461 29.997 hybrid contribution 0.104 0.473 -0.628 0.793 sum 2.780 5.440 28.833 29.473 Atomic orbital electron populations 1.22501 0.99309 1.00972 1.00054 1.20127 0.91754 0.95136 0.85452 0.93286 1.42364 1.78158 1.10647 1.05125 1.19172 1.36381 0.93817 0.87332 0.91296 1.24715 1.02303 0.95964 0.97981 1.69642 1.50968 1.08623 1.28938 0.86298 0.77749 0.78592 0.83714 1.21322 1.21782 1.21368 1.22661 0.94965 1.00556 0.94047 0.90089 1.22580 0.96647 1.03948 0.92230 1.22206 0.85727 1.00344 0.94431 1.48557 1.13945 1.67690 1.05016 1.19916 0.89187 0.77750 0.81115 1.90721 1.25495 1.48706 1.76207 1.19959 0.97551 1.04992 0.87474 1.21183 0.98004 0.91623 0.95098 1.77438 1.20593 1.22378 0.90300 1.45868 1.49789 1.09156 1.12793 0.71999 1.20864 0.99490 0.86424 0.97823 1.19667 1.12318 0.97582 0.93638 1.19984 0.99245 0.89705 0.99098 1.21600 1.01830 0.98253 0.94082 1.21583 0.99416 0.96365 0.97650 1.20405 1.01361 0.94367 0.93420 1.22292 0.92483 0.99594 0.86335 0.93469 0.92761 0.94361 0.78296 0.93525 0.89448 0.90269 0.91493 0.91461 0.87403 0.87044 0.91349 0.91093 0.91359 0.91604 0.91277 0.91030 0.89696 0.90416 0.91361 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.27 37.16 0.34 -2.67 16 2 C 0.19 3.49 2.42 -67.93 -0.16 3.32 16 3 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 4 N -0.72 -17.14 4.97 -53.43 -0.27 -17.41 16 5 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 9 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.10 -1.59 2.65 -88.47 -0.23 -1.83 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.62 6.28 -24.90 -0.16 -1.77 16 16 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 17 N -0.62 -8.31 3.33 -170.51 -0.57 -8.88 16 18 C 0.53 7.67 7.84 -10.99 -0.09 7.59 16 19 O -0.53 -9.84 16.29 5.56 0.09 -9.75 16 20 C -0.06 -0.64 5.32 -29.04 -0.15 -0.80 16 21 C 0.11 1.38 5.71 -82.52 -0.47 0.91 16 22 N -0.28 -3.89 12.71 33.59 0.43 -3.46 16 23 N -0.47 -4.85 7.34 33.48 0.25 -4.60 16 24 H 0.44 3.03 8.96 -182.45 -1.64 1.39 16 25 C 0.08 0.81 7.08 -82.33 -0.58 0.23 16 26 C -0.22 -2.47 5.91 -105.05 -0.62 -3.09 16 27 C -0.04 -0.37 6.05 -27.63 -0.17 -0.54 16 28 C -0.12 -0.84 5.89 -26.49 -0.16 -1.00 16 29 C -0.11 -0.62 5.92 -26.36 -0.16 -0.77 16 30 C -0.06 -0.34 6.30 -27.51 -0.17 -0.51 16 31 C 0.12 1.69 5.27 -2.52 -0.01 1.68 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.59 7.23 -51.93 -0.38 0.21 16 35 H 0.38 9.72 7.80 -40.82 -0.32 9.40 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.14 7.99 -51.93 -0.42 0.73 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.11 0.92 8.06 -51.93 -0.42 0.50 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 47 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 52 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 LS Contribution 414.65 15.07 6.25 6.25 Total: -1.00 -34.48 414.65 -11.47 -45.95 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -10.29 Total: 6.82 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.06 Total: -5.16 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.56 Total: -61.13 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.48 -11.47 -45.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.097 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds