Wall clock time and date at job start Wed Apr 1 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47389 * 60.00084 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47026 * 300.00519 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09000 * 110.88398 * 63.88175 * 13 2 1 15 15 C 1.55154 * 111.00855 * 187.80572 * 13 2 1 16 16 C 1.54328 * 102.94482 * 153.57938 * 15 13 2 17 17 N 1.47021 * 107.26855 * 337.80751 * 16 15 13 18 18 C 1.34778 * 125.64754 * 178.97763 * 17 16 15 19 19 O 1.21278 * 119.99921 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00091 * 359.95928 * 18 17 16 21 21 C 1.50696 * 109.47419 * 179.97438 * 20 18 17 22 22 N 1.31073 * 125.95919 * 90.01710 * 21 20 18 23 23 N 1.40291 * 108.26798 * 180.02562 * 22 21 20 24 24 H 0.97006 * 126.09086 * 179.97438 * 23 22 21 25 25 C 1.34323 * 107.81967 * 359.95499 * 23 22 21 26 26 C 1.35752 * 107.84417 * 359.81173 * 25 23 22 27 27 C 1.50833 * 124.11447 * 180.08834 * 26 25 23 28 28 C 1.53364 * 108.37428 * 343.66920 * 27 26 25 29 29 C 1.53111 * 109.50599 * 49.95829 * 28 27 26 30 30 C 1.50830 * 128.03502 * 180.17144 * 25 23 22 31 31 C 1.47431 * 108.70458 * 358.93835 * 17 16 15 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 34 34 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 35 35 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 36 36 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 37 37 H 1.09004 * 110.71981 * 271.93968 * 15 13 2 38 38 H 1.08997 * 110.71930 * 35.21428 * 15 13 2 39 39 H 1.09000 * 109.87788 * 218.39141 * 16 15 13 40 40 H 1.08995 * 110.01086 * 97.29357 * 16 15 13 41 41 H 1.09003 * 109.46984 * 299.99745 * 20 18 17 42 42 H 1.08999 * 109.47159 * 59.99352 * 20 18 17 43 43 H 1.09004 * 109.68371 * 103.39282 * 27 26 25 44 44 H 1.09000 * 109.68360 * 223.91288 * 27 26 25 45 45 H 1.09004 * 109.46431 * 169.96141 * 28 27 26 46 46 H 1.08999 * 109.46892 * 289.94431 * 28 27 26 47 47 H 1.08996 * 109.46492 * 49.72256 * 29 28 27 48 48 H 1.08999 * 109.46764 * 169.70931 * 29 28 27 49 49 H 1.09004 * 109.68166 * 283.13861 * 30 25 23 50 50 H 1.08998 * 109.68142 * 43.68984 * 30 25 23 51 51 H 1.08997 * 110.36583 * 265.29358 * 31 17 16 52 52 H 1.09004 * 110.45648 * 143.01214 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 3.7465 1.3928 -4.9362 11 1 3.3004 -0.6482 -6.1680 12 1 1.4692 0.8069 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 1.7469 -1.7709 1.2388 15 6 3.5783 -0.5738 1.3875 16 6 3.8036 -0.7111 2.9081 17 7 2.5331 -0.3787 3.5692 18 6 2.3105 -0.3989 4.8983 19 8 1.2180 -0.1040 5.3347 20 6 3.4189 -0.7882 5.8421 21 6 2.9143 -0.7300 7.2609 22 7 2.3560 -1.7156 7.9202 23 7 2.0286 -1.2559 9.2046 24 1 1.6037 -1.7741 9.9060 25 6 2.4088 0.0296 9.2903 26 6 2.9646 0.3791 8.1021 27 6 3.5193 1.7484 7.7979 28 6 2.9874 2.7300 8.8493 29 6 3.2181 2.1545 10.2492 30 6 2.2758 0.9615 10.4688 31 6 1.5433 -0.0188 2.5375 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 0.5139 0.8900 35 1 2.2490 -1.6317 -1.1525 36 1 3.2490 -2.3961 -4.2418 37 1 4.0920 -1.3697 0.8482 38 1 3.9051 0.4048 1.0361 39 1 4.5817 -0.0198 3.2314 40 1 4.0917 -1.7337 3.1516 41 1 3.7502 -1.8015 5.6152 42 1 4.2546 -0.0981 5.7255 43 1 4.6083 1.7208 7.8390 44 1 3.1973 2.0627 6.8051 45 1 3.5120 3.6810 8.7566 46 1 1.9202 2.8872 8.6925 47 1 4.2539 1.8280 10.3415 48 1 3.0109 2.9211 10.9958 49 1 1.2446 1.3053 10.5504 50 1 2.5631 0.4411 11.3825 51 1 1.5193 1.0616 2.3954 52 1 0.5549 -0.3866 2.8131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754791225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:57 Heat of formation + Delta-G solvation = 8.334866 kcal Electronic energy + Delta-G solvation = -30362.981424 eV Core-core repulsion = 26362.214733 eV Total energy + Delta-G solvation = -4000.766691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.56863 -41.05320 -39.03379 -37.34794 -36.75062 -34.58462 -34.17452 -32.10186 -31.01702 -30.75528 -30.31344 -29.50911 -28.39609 -26.18569 -24.53293 -24.43079 -22.96833 -22.74893 -21.56839 -21.02193 -19.89200 -19.63137 -19.11234 -18.48410 -18.15983 -17.45120 -16.62479 -16.47812 -16.10197 -15.67889 -15.42827 -15.20695 -14.88588 -14.72474 -14.67270 -14.57882 -14.42068 -14.11530 -13.96491 -13.88409 -13.72211 -13.64515 -13.38448 -13.19122 -12.93491 -12.86299 -12.81255 -12.73817 -12.29738 -12.20894 -11.92527 -11.74950 -11.71482 -11.63531 -11.53340 -11.44178 -11.38184 -11.34392 -11.05538 -10.88031 -10.26654 -9.64589 -9.20324 -8.95569 -7.88604 -5.15707 0.88016 1.50399 1.52222 1.55856 1.58176 1.60602 1.90174 2.18398 2.60148 3.42120 3.47274 3.52807 3.68396 3.72029 3.82651 3.88108 3.95814 4.06348 4.13988 4.25510 4.31986 4.36756 4.37172 4.41541 4.52581 4.55166 4.62893 4.64452 4.67817 4.71094 4.78973 4.80013 4.82702 4.92843 5.00101 5.03408 5.07772 5.09184 5.19528 5.24928 5.26449 5.29852 5.36933 5.40719 5.42662 5.51152 5.56879 5.61752 5.70609 6.33201 6.45116 6.52359 6.70943 7.12615 7.40189 8.16252 8.40068 9.34423 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.001878 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.007914 B =14909.100863 C =15118.305763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.283 1.283 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.113 4.113 16 C 0.101 3.899 17 N -0.616 5.616 18 C 0.532 3.468 19 O -0.582 6.582 20 C -0.052 4.052 21 C 0.088 3.912 22 N -0.328 5.328 23 N -0.466 5.466 24 H 0.448 0.552 25 C 0.087 3.913 26 C -0.245 4.245 27 C -0.041 4.041 28 C -0.120 4.120 29 C -0.108 4.108 30 C -0.056 4.056 31 C 0.122 3.878 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.101 0.899 51 H 0.073 0.927 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 7.499 31.432 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.364 4.364 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.210 1.210 13 C -0.114 4.114 14 H 0.090 0.910 15 C -0.151 4.151 16 C -0.021 4.021 17 N -0.350 5.350 18 C 0.321 3.679 19 O -0.462 6.462 20 C -0.093 4.093 21 C -0.077 4.077 22 N -0.152 5.152 23 N -0.175 5.175 24 H 0.293 0.707 25 C -0.043 4.043 26 C -0.256 4.256 27 C -0.079 4.079 28 C -0.158 4.158 29 C -0.146 4.146 30 C -0.094 4.094 31 C -0.001 4.001 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.119 0.881 51 H 0.091 0.909 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.840 6.573 31.575 32.480 hybrid contribution -0.330 0.009 -1.195 1.240 sum 3.510 6.582 30.380 31.282 Atomic orbital electron populations 1.22381 0.98505 1.00641 1.00520 1.20291 0.92137 0.95020 0.85097 0.93230 1.42511 1.78297 1.10254 1.05934 1.19526 1.34448 0.94071 0.88306 0.90839 1.25450 1.03343 0.96831 1.01119 1.69793 1.52801 1.10050 1.29266 0.85314 0.77757 0.77405 0.79895 1.20323 1.22525 1.20966 1.22441 0.96455 0.99562 0.92985 0.91032 1.22514 0.94907 1.03313 0.94362 1.22309 0.85287 1.02461 0.92013 1.48591 1.14393 1.67201 1.04772 1.20474 0.89313 0.76710 0.81356 1.90696 1.27576 1.50934 1.76970 1.20028 0.96887 1.06429 0.85934 1.21536 0.98166 0.92159 0.95865 1.77332 1.22164 1.23812 0.91908 1.45920 1.49529 1.09713 1.12302 0.70651 1.21493 0.97784 0.86329 0.98694 1.20064 1.13252 0.98252 0.94067 1.20026 1.00060 0.88999 0.98857 1.21611 1.00981 0.98569 0.94605 1.21595 0.99427 0.96515 0.97077 1.20589 1.02085 0.93994 0.92760 1.22111 0.92326 0.99593 0.86108 0.94204 0.94397 0.91705 0.79519 0.94242 0.90480 0.90654 0.88316 0.89586 0.86053 0.84024 0.89902 0.92725 0.89886 0.93043 0.90920 0.88873 0.88990 0.88051 0.90887 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 9.27 71.98 0.67 -5.06 16 2 C 0.18 6.84 2.42 44.99 0.11 6.95 16 3 H 0.05 1.86 8.02 -2.39 -0.02 1.84 16 4 N -0.73 -34.97 4.97 -322.94 -1.61 -36.58 16 5 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 6 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 7 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 8 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 9 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 C -0.09 -2.90 2.65 -9.40 -0.02 -2.93 16 14 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.11 -3.01 6.28 31.78 0.20 -2.81 16 16 C 0.10 2.01 6.49 86.73 0.56 2.58 16 17 N -0.62 -15.72 3.33 -811.78 -2.70 -18.42 16 18 C 0.53 14.88 7.84 87.66 0.69 15.57 16 19 O -0.58 -21.62 16.29 -3.02 -0.05 -21.67 16 20 C -0.05 -1.07 5.32 29.10 0.15 -0.91 16 21 C 0.09 2.21 5.71 42.93 0.24 2.45 16 22 N -0.33 -8.94 12.71 -47.63 -0.61 -9.55 16 23 N -0.47 -9.34 7.34 -47.98 -0.35 -9.69 16 24 H 0.45 5.92 8.96 -213.19 -1.91 4.01 16 25 C 0.09 1.58 7.08 41.64 0.29 1.88 16 26 C -0.25 -5.25 5.91 -20.14 -0.12 -5.37 16 27 C -0.04 -0.67 6.05 30.01 0.18 -0.49 16 28 C -0.12 -1.45 5.89 30.75 0.18 -1.27 16 29 C -0.11 -0.87 5.92 30.83 0.18 -0.69 16 30 C -0.06 -0.53 6.30 30.09 0.19 -0.34 16 31 C 0.12 3.47 5.27 86.85 0.46 3.93 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.95 7.23 -2.38 -0.02 1.93 16 35 H 0.37 19.30 7.80 -92.71 -0.72 18.58 16 36 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 37 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.07 2.07 7.99 -2.39 -0.02 2.05 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.14 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 47 H 0.07 0.57 8.11 -2.39 -0.02 0.55 16 48 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 51 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 52 H 0.06 1.96 7.94 -2.38 -0.02 1.94 16 Total: -1.00 -76.13 414.65 0.56 -75.57 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -1.71 Total: 32.36 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.27 Total: -1.85 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -4.98 Total: -131.96 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.13 0.56 -75.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.907 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds