Wall clock time and date at job start Wed Apr 1 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 N 1.46500 * 109.47047 * 120.00405 * 2 1 3 5 5 C 1.36935 * 120.00013 * 274.99583 * 4 2 1 6 6 H 1.08003 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00416 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47153 * 59.99554 * 9 7 5 11 11 H 1.48500 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46742 * 299.99878 * 9 7 5 13 13 C 1.53001 * 109.46833 * 239.99929 * 2 1 3 14 14 H 1.08998 * 110.88937 * 300.11365 * 13 2 1 15 15 C 1.55152 * 111.00619 * 176.18168 * 13 2 1 16 16 C 1.54320 * 102.94659 * 206.42563 * 15 13 2 17 17 N 1.47025 * 107.26929 * 22.19210 * 16 15 13 18 18 C 1.34776 * 125.64624 * 181.09390 * 17 16 15 19 19 O 1.21571 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.47709 * 120.00251 * 359.95933 * 18 17 16 21 21 N 1.32044 * 126.64635 * 359.68652 * 20 18 17 22 22 N 1.28679 * 110.11019 * 179.84991 * 21 20 18 23 23 H 0.96994 * 124.94566 * 179.71869 * 22 21 20 24 24 C 1.34753 * 110.10357 * 359.95390 * 22 21 20 25 25 C 1.35206 * 107.18248 * 0.50466 * 24 22 21 26 26 C 1.50383 * 126.23656 * 178.64951 * 25 24 22 27 27 C 1.53215 * 109.09064 * 27.88129 * 26 25 24 28 28 C 1.52648 * 109.60034 * 271.31888 * 27 26 25 29 29 C 1.52612 * 110.81834 * 61.52288 * 28 27 26 30 30 C 1.50690 * 127.38247 * 180.75984 * 24 22 21 31 31 C 1.47422 * 108.70609 * 1.06211 * 17 16 15 32 32 H 1.09007 * 109.46845 * 54.91148 * 1 2 3 33 33 H 1.09000 * 109.46666 * 294.91517 * 1 2 3 34 34 H 1.08997 * 109.47251 * 174.91604 * 1 2 3 35 35 H 0.96999 * 119.99796 * 94.99331 * 4 2 1 36 36 H 0.97001 * 120.00377 * 180.02562 * 8 7 5 37 37 H 1.08998 * 110.71873 * 324.79158 * 15 13 2 38 38 H 1.08999 * 110.71948 * 88.06012 * 15 13 2 39 39 H 1.09000 * 109.88349 * 262.77445 * 16 15 13 40 40 H 1.09002 * 110.01309 * 141.68183 * 16 15 13 41 41 H 1.08996 * 109.53260 * 147.76535 * 26 25 24 42 42 H 1.09006 * 109.53295 * 267.99783 * 26 25 24 43 43 H 1.09001 * 109.44604 * 31.35403 * 27 26 25 44 44 H 1.08994 * 109.45157 * 151.30206 * 27 26 25 45 45 H 1.08996 * 109.21206 * 181.86953 * 28 27 26 46 46 H 1.09005 * 109.20556 * 301.18455 * 28 27 26 47 47 H 1.08993 * 109.41455 * 153.73396 * 29 28 27 48 48 H 1.09004 * 109.41345 * 273.59398 * 29 28 27 49 49 H 1.09002 * 109.52764 * 106.92391 * 30 24 22 50 50 H 1.09003 * 109.57805 * 346.76000 * 30 24 22 51 51 H 1.08991 * 110.37006 * 217.03438 * 31 17 16 52 52 H 1.09005 * 110.46086 * 94.74987 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5089 8 7 2.9254 -1.9390 3.4498 9 14 2.7902 0.2697 5.1182 10 1 1.4676 0.8055 5.5288 11 1 3.3004 -0.6484 6.1680 12 1 3.7448 1.3928 4.9371 13 6 2.0400 -0.7213 -1.2493 14 1 1.6878 -1.7525 -1.2736 15 6 3.5879 -0.6591 -1.3345 16 6 3.8557 -0.7752 -2.8498 17 7 2.6288 -0.3560 -3.5432 18 6 2.4496 -0.3351 -4.8788 19 8 1.3879 0.0315 -5.3440 20 6 3.5431 -0.7574 -5.7775 21 7 4.7442 -1.1710 -5.4171 22 7 5.4429 -1.4615 -6.4579 23 1 6.3579 -1.7828 -6.4409 24 6 4.7199 -1.2494 -7.5751 25 6 3.5089 -0.7910 -7.1861 26 6 2.3772 -0.3901 -8.0918 27 6 2.4798 -1.1791 -9.4012 28 6 3.3595 -0.4184 -10.3899 29 6 4.7742 -0.2535 -9.8416 30 6 5.1511 -1.4772 -9.0009 31 6 1.6270 0.0369 -2.5356 32 1 -0.3633 0.5908 -0.8410 33 1 -0.3632 0.4329 0.9320 34 1 -0.3633 -1.0236 -0.0911 35 1 2.2490 -1.6319 1.1525 36 1 3.2487 -2.3963 4.2418 37 1 3.9575 0.2912 -0.9492 38 1 4.0375 -1.4948 -0.7983 39 1 4.0922 -1.8078 -3.1065 40 1 4.6827 -0.1241 -3.1335 41 1 1.4265 -0.6109 -7.6067 42 1 2.4405 0.6773 -8.3035 43 1 2.9189 -2.1567 -9.2023 44 1 1.4844 -1.3080 -9.8262 45 1 3.4011 -0.9685 -11.3299 46 1 2.9278 0.5661 -10.5701 47 1 5.4747 -0.1537 -10.6706 48 1 4.8197 0.6403 -9.2193 49 1 4.6489 -2.3599 -9.3969 50 1 6.2304 -1.6253 -9.0369 51 1 0.6300 -0.2689 -2.8526 52 1 1.6574 1.1135 -2.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754807058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:43 Heat of formation + Delta-G solvation = 37.021319 kcal Electronic energy + Delta-G solvation = -30793.006123 eV Core-core repulsion = 26793.483370 eV Total energy + Delta-G solvation = -3999.522753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.05979 -39.72151 -37.91453 -37.60372 -35.12851 -33.22202 -32.40468 -31.34975 -30.93525 -30.10572 -29.13912 -27.40574 -25.82882 -25.10002 -24.71887 -23.75671 -22.19186 -21.33933 -20.15282 -19.89565 -19.55955 -19.04611 -17.91287 -17.20374 -16.80397 -16.29317 -16.03979 -15.39617 -15.17770 -14.90878 -14.66501 -14.13258 -13.75889 -13.64606 -13.60882 -13.49933 -13.34194 -13.08338 -12.65619 -12.54758 -12.50561 -12.34532 -12.07535 -12.00413 -11.73980 -11.52989 -11.47744 -11.13877 -11.10217 -10.84734 -10.79800 -10.64316 -10.60511 -10.51525 -10.25741 -10.19118 -9.94817 -9.78474 -9.59879 -9.49683 -8.88015 -8.86074 -8.44412 -6.93094 -5.74027 -3.02143 1.47224 1.88288 2.58234 3.11063 3.41740 3.45461 3.50206 3.50761 4.15412 4.26450 4.42051 4.45523 4.59291 4.71308 4.78520 4.82753 4.93145 4.98087 5.05252 5.08428 5.21666 5.24759 5.44069 5.50004 5.53359 5.57693 5.58857 5.67434 5.69591 5.73967 5.83174 5.86198 5.89115 5.94389 6.05472 6.05931 6.07084 6.09216 6.17109 6.30543 6.32406 6.38855 6.48845 6.53311 6.67226 6.71079 6.78210 6.92793 7.15583 7.58304 7.69544 7.72472 8.25103 8.44641 9.55873 10.13744 10.48874 11.48567 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.002040 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961497 B =13720.673517 C =14437.267643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.117 4.117 16 C 0.109 3.891 17 N -0.603 5.603 18 C 0.613 3.387 19 O -0.537 6.537 20 C -0.003 4.003 21 N -0.252 5.252 22 N -0.380 5.380 23 H 0.444 0.556 24 C 0.010 3.990 25 C -0.138 4.138 26 C -0.045 4.045 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.114 4.114 30 C -0.049 4.049 31 C 0.115 3.885 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 0.436 -29.605 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.155 4.155 16 C -0.014 4.014 17 N -0.336 5.336 18 C 0.400 3.600 19 O -0.413 6.413 20 C -0.163 4.163 21 N -0.088 5.088 22 N -0.093 5.093 23 H 0.288 0.712 24 C -0.116 4.116 25 C -0.148 4.148 26 C -0.083 4.083 27 C -0.161 4.161 28 C -0.158 4.158 29 C -0.152 4.152 30 C -0.088 4.088 31 C -0.007 4.007 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.881 0.572 -28.814 29.414 hybrid contribution 0.415 0.022 0.478 0.633 sum 6.296 0.594 -28.337 29.034 Atomic orbital electron populations 1.22494 0.99252 1.00634 1.00417 1.20133 0.91771 0.95153 0.85448 0.93289 1.42357 1.78158 1.10653 1.05109 1.19175 1.36263 0.93823 0.87317 0.91290 1.24714 1.02364 0.95969 0.97970 1.69647 1.51055 1.08615 1.28903 0.86297 0.77744 0.78584 0.83733 1.21356 1.21802 1.21355 1.22672 0.95375 1.00171 0.93987 0.90132 1.22608 0.96195 1.03941 0.92766 1.22156 0.86317 1.00261 0.92646 1.48371 1.16487 1.64224 1.04491 1.16475 0.85430 0.78005 0.80089 1.90762 1.26336 1.48992 1.75224 1.21665 0.93094 1.08156 0.93374 1.73887 1.04776 1.16908 1.13201 1.43218 1.14645 1.48682 1.02804 0.71213 1.21121 0.92938 1.06792 0.90724 1.19863 0.96113 1.06428 0.92385 1.19995 0.96016 0.99601 0.92735 1.21708 0.99929 0.99378 0.95095 1.21524 0.94951 1.00963 0.98390 1.21522 0.97165 0.97521 0.99023 1.20239 1.00956 1.00131 0.87425 1.22331 0.92165 0.99371 0.86830 0.94340 0.92600 0.93584 0.78300 0.93557 0.90394 0.89594 0.91285 0.91386 0.89382 0.90835 0.91421 0.91511 0.92057 0.91656 0.91237 0.91388 0.89113 0.90933 0.90379 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.23 37.16 0.34 -2.69 16 2 C 0.19 3.57 2.40 -67.93 -0.16 3.41 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.72 -17.46 4.88 -53.43 -0.26 -17.72 16 5 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 9 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.10 -1.67 2.63 -88.47 -0.23 -1.91 16 14 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -1.83 6.19 -24.90 -0.15 -1.99 16 16 C 0.11 1.54 5.55 -3.06 -0.02 1.52 16 17 N -0.60 -9.25 3.33 -171.68 -0.57 -9.83 16 18 C 0.61 9.85 7.86 -12.39 -0.10 9.75 16 19 O -0.54 -9.66 15.50 5.30 0.08 -9.58 16 20 C 0.00 -0.04 6.97 -82.88 -0.58 -0.61 16 21 N -0.25 -3.06 9.79 33.34 0.33 -2.73 16 22 N -0.38 -3.28 6.83 33.42 0.23 -3.05 16 23 H 0.44 2.18 8.96 -190.32 -1.71 0.47 16 24 C 0.01 0.09 6.38 -82.39 -0.53 -0.44 16 25 C -0.14 -1.58 5.68 -104.83 -0.60 -2.18 16 26 C -0.05 -0.47 5.29 -27.93 -0.15 -0.61 16 27 C -0.12 -0.90 5.54 -26.80 -0.15 -1.05 16 28 C -0.12 -0.67 5.64 -27.11 -0.15 -0.82 16 29 C -0.11 -0.60 5.64 -26.84 -0.15 -0.75 16 30 C -0.05 -0.26 5.55 -27.80 -0.15 -0.41 16 31 C 0.12 1.77 5.52 -2.52 -0.01 1.76 16 32 H 0.04 0.59 7.60 -51.93 -0.39 0.20 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 40 H 0.07 0.93 7.76 -51.93 -0.40 0.52 16 41 H 0.09 1.09 6.90 -51.93 -0.36 0.73 16 42 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 43 H 0.07 0.49 5.66 -51.93 -0.29 0.20 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 49 H 0.09 0.43 6.35 -51.93 -0.33 0.10 16 50 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 52 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -32.64 401.60 -11.51 -44.15 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -10.03 Total: 6.58 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.03 Total: -4.05 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.45 Total: -60.43 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.64 -11.51 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754807058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.172 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds