Wall clock time and date at job start Wed Apr 1 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 N 1.46500 * 109.47047 * 120.00405 * 2 1 3 5 5 C 1.36935 * 120.00013 * 274.99583 * 4 2 1 6 6 H 1.08003 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00416 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47153 * 59.99554 * 9 7 5 11 11 H 1.48500 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46742 * 299.99878 * 9 7 5 13 13 C 1.53001 * 109.46833 * 239.99929 * 2 1 3 14 14 H 1.08998 * 110.88937 * 300.11365 * 13 2 1 15 15 C 1.55152 * 111.00619 * 176.18168 * 13 2 1 16 16 C 1.54320 * 102.94659 * 206.42563 * 15 13 2 17 17 N 1.47025 * 107.26929 * 22.19210 * 16 15 13 18 18 C 1.34776 * 125.64624 * 181.09390 * 17 16 15 19 19 O 1.21571 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.47709 * 120.00251 * 359.95933 * 18 17 16 21 21 N 1.32044 * 126.64635 * 359.68652 * 20 18 17 22 22 N 1.28679 * 110.11019 * 179.84991 * 21 20 18 23 23 H 0.96994 * 124.94566 * 179.71869 * 22 21 20 24 24 C 1.34753 * 110.10357 * 359.95390 * 22 21 20 25 25 C 1.35206 * 107.18248 * 0.50466 * 24 22 21 26 26 C 1.50383 * 126.23656 * 178.64951 * 25 24 22 27 27 C 1.53215 * 109.09064 * 27.88129 * 26 25 24 28 28 C 1.52648 * 109.60034 * 271.31888 * 27 26 25 29 29 C 1.52612 * 110.81834 * 61.52288 * 28 27 26 30 30 C 1.50690 * 127.38247 * 180.75984 * 24 22 21 31 31 C 1.47422 * 108.70609 * 1.06211 * 17 16 15 32 32 H 1.09007 * 109.46845 * 54.91148 * 1 2 3 33 33 H 1.09000 * 109.46666 * 294.91517 * 1 2 3 34 34 H 1.08997 * 109.47251 * 174.91604 * 1 2 3 35 35 H 0.96999 * 119.99796 * 94.99331 * 4 2 1 36 36 H 0.97001 * 120.00377 * 180.02562 * 8 7 5 37 37 H 1.08998 * 110.71873 * 324.79158 * 15 13 2 38 38 H 1.08999 * 110.71948 * 88.06012 * 15 13 2 39 39 H 1.09000 * 109.88349 * 262.77445 * 16 15 13 40 40 H 1.09002 * 110.01309 * 141.68183 * 16 15 13 41 41 H 1.08996 * 109.53260 * 147.76535 * 26 25 24 42 42 H 1.09006 * 109.53295 * 267.99783 * 26 25 24 43 43 H 1.09001 * 109.44604 * 31.35403 * 27 26 25 44 44 H 1.08994 * 109.45157 * 151.30206 * 27 26 25 45 45 H 1.08996 * 109.21206 * 181.86953 * 28 27 26 46 46 H 1.09005 * 109.20556 * 301.18455 * 28 27 26 47 47 H 1.08993 * 109.41455 * 153.73396 * 29 28 27 48 48 H 1.09004 * 109.41345 * 273.59398 * 29 28 27 49 49 H 1.09002 * 109.52764 * 106.92391 * 30 24 22 50 50 H 1.09003 * 109.57805 * 346.76000 * 30 24 22 51 51 H 1.08991 * 110.37006 * 217.03438 * 31 17 16 52 52 H 1.09005 * 110.46086 * 94.74987 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5089 8 7 2.9254 -1.9390 3.4498 9 14 2.7902 0.2697 5.1182 10 1 1.4676 0.8055 5.5288 11 1 3.3004 -0.6484 6.1680 12 1 3.7448 1.3928 4.9371 13 6 2.0400 -0.7213 -1.2493 14 1 1.6878 -1.7525 -1.2736 15 6 3.5879 -0.6591 -1.3345 16 6 3.8557 -0.7752 -2.8498 17 7 2.6288 -0.3560 -3.5432 18 6 2.4496 -0.3351 -4.8788 19 8 1.3879 0.0315 -5.3440 20 6 3.5431 -0.7574 -5.7775 21 7 4.7442 -1.1710 -5.4171 22 7 5.4429 -1.4615 -6.4579 23 1 6.3579 -1.7828 -6.4409 24 6 4.7199 -1.2494 -7.5751 25 6 3.5089 -0.7910 -7.1861 26 6 2.3772 -0.3901 -8.0918 27 6 2.4798 -1.1791 -9.4012 28 6 3.3595 -0.4184 -10.3899 29 6 4.7742 -0.2535 -9.8416 30 6 5.1511 -1.4772 -9.0009 31 6 1.6270 0.0369 -2.5356 32 1 -0.3633 0.5908 -0.8410 33 1 -0.3632 0.4329 0.9320 34 1 -0.3633 -1.0236 -0.0911 35 1 2.2490 -1.6319 1.1525 36 1 3.2487 -2.3963 4.2418 37 1 3.9575 0.2912 -0.9492 38 1 4.0375 -1.4948 -0.7983 39 1 4.0922 -1.8078 -3.1065 40 1 4.6827 -0.1241 -3.1335 41 1 1.4265 -0.6109 -7.6067 42 1 2.4405 0.6773 -8.3035 43 1 2.9189 -2.1567 -9.2023 44 1 1.4844 -1.3080 -9.8262 45 1 3.4011 -0.9685 -11.3299 46 1 2.9278 0.5661 -10.5701 47 1 5.4747 -0.1537 -10.6706 48 1 4.8197 0.6403 -9.2193 49 1 4.6489 -2.3599 -9.3969 50 1 6.2304 -1.6253 -9.0369 51 1 0.6300 -0.2689 -2.8526 52 1 1.6574 1.1135 -2.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754807058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:42 Heat of formation + Delta-G solvation = 17.141496 kcal Electronic energy + Delta-G solvation = -30793.868176 eV Core-core repulsion = 26793.483370 eV Total energy + Delta-G solvation = -4000.384807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.87672 -40.98566 -39.00056 -38.45338 -36.77533 -34.32310 -33.89355 -32.22761 -31.92866 -31.15546 -30.78091 -28.84887 -26.56360 -26.37808 -25.46298 -25.33138 -23.40386 -22.79047 -21.09416 -20.82764 -20.47677 -20.15341 -19.12150 -18.68268 -17.95130 -17.45516 -17.08804 -16.49001 -16.37990 -15.90115 -15.67110 -15.50124 -15.29584 -14.86800 -14.70452 -14.37493 -14.26461 -14.10084 -14.02375 -13.87541 -13.76707 -13.44523 -13.25344 -13.17053 -12.92373 -12.74687 -12.62248 -12.34790 -12.24629 -12.20274 -12.06190 -11.97451 -11.67397 -11.63109 -11.54387 -11.44745 -11.32775 -11.28662 -10.97509 -10.88992 -10.38103 -9.74856 -9.56680 -8.96167 -7.89238 -5.16334 0.47755 1.08506 1.49317 1.51341 1.57118 1.74133 2.10858 2.28421 2.59268 3.22748 3.43655 3.54349 3.64701 3.67665 3.83957 3.87822 4.01478 4.07013 4.18363 4.24329 4.26415 4.31536 4.38236 4.40133 4.53314 4.54515 4.62476 4.64670 4.70237 4.79434 4.88097 4.91712 4.95453 4.98739 5.02460 5.07974 5.12885 5.14898 5.18678 5.19889 5.30082 5.33461 5.36951 5.39010 5.43960 5.49190 5.56248 5.60568 5.62150 6.12452 6.32525 6.40906 6.79174 7.06970 7.39446 8.15433 8.39511 9.33886 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.002040 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.961497 B =13720.673517 C =14437.267643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.279 1.279 13 C -0.092 4.092 14 H 0.076 0.924 15 C -0.112 4.112 16 C 0.123 3.877 17 N -0.606 5.606 18 C 0.608 3.392 19 O -0.566 6.566 20 C -0.035 4.035 21 N -0.265 5.265 22 N -0.361 5.361 23 H 0.461 0.539 24 C 0.032 3.968 25 C -0.161 4.161 26 C -0.042 4.042 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.113 4.113 30 C -0.048 4.048 31 C 0.121 3.879 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.077 0.923 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 0.651 -32.004 32.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.797 3.203 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.205 1.205 13 C -0.112 4.112 14 H 0.094 0.906 15 C -0.150 4.150 16 C 0.001 3.999 17 N -0.339 5.339 18 C 0.396 3.604 19 O -0.444 6.444 20 C -0.194 4.194 21 N -0.102 5.102 22 N -0.078 5.078 23 H 0.309 0.691 24 C -0.095 4.095 25 C -0.172 4.172 26 C -0.081 4.081 27 C -0.155 4.155 28 C -0.156 4.156 29 C -0.151 4.151 30 C -0.086 4.086 31 C -0.001 4.001 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.068 0.932 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.095 0.905 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.361 0.816 -31.235 32.101 hybrid contribution -0.038 -0.025 1.116 1.117 sum 7.324 0.791 -30.119 31.006 Atomic orbital electron populations 1.22361 0.97970 1.00911 1.00696 1.20290 0.92501 0.94868 0.84880 0.93402 1.42504 1.78354 1.10258 1.05909 1.19528 1.34426 0.94082 0.88271 0.90834 1.25458 1.03352 0.96850 1.01143 1.69799 1.52839 1.10046 1.29265 0.85304 0.77791 0.77352 0.79870 1.20793 1.22471 1.20510 1.22462 0.95893 0.99613 0.93213 0.90606 1.22515 0.95462 1.03139 0.93851 1.22033 0.86073 1.00681 0.91118 1.48417 1.16676 1.64242 1.04525 1.16857 0.85785 0.77461 0.80273 1.90731 1.27645 1.50336 1.75697 1.21501 0.93361 1.10424 0.94089 1.73785 1.04472 1.17415 1.14536 1.43324 1.15185 1.47049 1.02211 0.69053 1.21582 0.91632 1.04193 0.92133 1.20107 0.97698 1.07702 0.91646 1.19933 0.94405 0.99736 0.94005 1.21679 1.00783 0.99233 0.93840 1.21516 0.94789 1.00749 0.98548 1.21525 0.97415 0.96686 0.99446 1.20437 1.02999 1.00508 0.84673 1.22218 0.92259 0.99413 0.86226 0.91446 0.94357 0.93817 0.79516 0.94240 0.91013 0.90577 0.90876 0.90551 0.92368 0.91498 0.91032 0.91247 0.90131 0.92050 0.88903 0.93160 0.87864 0.87931 0.90492 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 9.23 71.98 0.66 -5.03 16 2 C 0.18 7.05 2.40 44.99 0.11 7.16 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.73 -35.71 4.88 -322.94 -1.58 -37.29 16 5 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 8 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 9 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C -0.09 -3.01 2.63 -9.40 -0.02 -3.04 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 15 C -0.11 -3.50 6.19 31.78 0.20 -3.30 16 16 C 0.12 3.44 5.55 86.73 0.48 3.92 16 17 N -0.61 -18.64 3.33 -815.33 -2.71 -21.35 16 18 C 0.61 19.91 7.86 86.75 0.68 20.59 16 19 O -0.57 -21.10 15.50 -3.94 -0.06 -21.16 16 20 C -0.04 -0.98 6.97 42.28 0.29 -0.68 16 21 N -0.26 -6.15 9.79 -48.42 -0.47 -6.63 16 22 N -0.36 -5.43 6.83 -48.17 -0.33 -5.76 16 23 H 0.46 3.14 8.96 -219.89 -1.97 1.17 16 24 C 0.03 0.48 6.38 41.41 0.26 0.74 16 25 C -0.16 -3.63 5.68 -20.00 -0.11 -3.74 16 26 C -0.04 -0.89 5.29 29.82 0.16 -0.73 16 27 C -0.12 -1.56 5.54 30.55 0.17 -1.39 16 28 C -0.12 -1.03 5.64 30.35 0.17 -0.86 16 29 C -0.11 -0.84 5.64 30.52 0.17 -0.67 16 30 C -0.05 -0.32 5.55 29.90 0.17 -0.16 16 31 C 0.12 3.70 5.52 86.86 0.48 4.18 16 32 H 0.07 2.00 7.60 -2.38 -0.02 1.98 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.37 19.67 7.80 -92.71 -0.72 18.95 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.00 7.67 -2.39 -0.02 1.98 16 40 H 0.08 2.02 7.76 -2.39 -0.02 2.00 16 41 H 0.06 1.54 6.90 -2.39 -0.02 1.52 16 42 H 0.07 1.42 7.83 -2.38 -0.02 1.40 16 43 H 0.07 0.89 5.66 -2.39 -0.01 0.87 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.06 0.59 8.09 -2.38 -0.02 0.57 16 47 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.05 0.57 7.79 -2.38 -0.02 0.56 16 49 H 0.10 0.56 6.35 -2.39 -0.02 0.54 16 50 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 52 H 0.08 2.23 8.03 -2.38 -0.02 2.21 16 Total: -1.00 -71.89 401.60 0.57 -71.31 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -1.76 Total: 29.76 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.17 Total: 1.39 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -4.81 Total: -129.45 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.89 0.57 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754807058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.455 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds