Wall clock time and date at job start Wed Apr 1 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46863 * 2 1 4 4 N 1.46503 * 109.46931 * 240.00145 * 2 1 3 5 5 C 1.36929 * 120.00227 * 85.00110 * 4 2 1 6 6 H 1.08008 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00493 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00651 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99347 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47342 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46765 * 209.99832 * 9 7 5 12 12 H 1.48498 * 109.47537 * 329.99839 * 9 7 5 13 13 C 1.53002 * 109.47187 * 120.00032 * 2 1 3 14 14 H 1.09000 * 110.88398 * 57.57472 * 13 2 1 15 15 C 1.55552 * 110.99828 * 293.66709 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34776 * 125.65214 * 181.01647 * 17 16 15 19 19 O 1.21565 * 120.00846 * 179.97438 * 18 17 16 20 20 C 1.47718 * 119.99571 * 359.97438 * 18 17 16 21 21 N 1.32046 * 126.64792 * 359.68536 * 20 18 17 22 22 N 1.28676 * 110.10868 * 179.84935 * 21 20 18 23 23 H 0.97001 * 124.94405 * 179.71289 * 22 21 20 24 24 C 1.34755 * 110.10573 * 359.95764 * 22 21 20 25 25 C 1.35205 * 107.18216 * 0.49961 * 24 22 21 26 26 C 1.50377 * 126.23393 * 178.65163 * 25 24 22 27 27 C 1.53207 * 109.09142 * 27.88747 * 26 25 24 28 28 C 1.52652 * 109.59492 * 271.31227 * 27 26 25 29 29 C 1.52610 * 110.81878 * 61.52830 * 28 27 26 30 30 C 1.50690 * 127.38179 * 180.75810 * 24 22 21 31 31 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 32 32 H 1.09005 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47079 * 299.99923 * 1 2 3 34 34 H 1.08993 * 109.47389 * 60.00089 * 1 2 3 35 35 H 0.97004 * 119.99825 * 264.99767 * 4 2 1 36 36 H 0.96991 * 120.00258 * 180.02562 * 8 7 5 37 37 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 38 38 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 39 39 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 40 40 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 41 41 H 1.09007 * 109.53241 * 147.76813 * 26 25 24 42 42 H 1.09000 * 109.53208 * 267.99881 * 26 25 24 43 43 H 1.09000 * 109.45334 * 31.35216 * 27 26 25 44 44 H 1.09000 * 109.45165 * 151.30296 * 27 26 25 45 45 H 1.09007 * 109.21179 * 181.86993 * 28 27 26 46 46 H 1.08998 * 109.21183 * 301.18196 * 28 27 26 47 47 H 1.08994 * 109.41579 * 153.73074 * 29 28 27 48 48 H 1.08997 * 109.41271 * 273.59142 * 29 28 27 49 49 H 1.08997 * 109.52231 * 106.91860 * 30 24 22 50 50 H 1.09002 * 109.57525 * 346.76265 * 30 24 22 51 51 H 1.08997 * 110.36526 * 94.70985 * 31 17 16 52 52 H 1.08992 * 110.36633 * 216.92450 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8918 1.0404 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.7375 -0.0053 -4.6430 9 14 3.0578 -2.4738 -3.4248 10 1 1.8612 -3.2932 -3.7441 11 1 4.1334 -2.7652 -4.4063 12 1 3.5330 -2.8037 -2.0571 13 6 2.0400 -0.7213 1.2492 14 1 1.6547 -1.7399 1.2943 15 6 1.6762 0.0707 2.5377 16 6 2.7766 -0.3654 3.5279 17 7 3.9165 -0.8474 2.7342 18 6 5.0702 -1.3347 3.2320 19 8 5.9485 -1.7067 2.4783 20 6 5.2676 -1.4168 4.6937 21 7 4.4097 -1.0470 5.6268 22 7 4.9063 -1.2614 6.7944 23 1 4.4598 -1.0647 7.6327 24 6 6.1391 -1.7942 6.6827 25 6 6.4106 -1.8994 5.3624 26 6 7.6863 -2.4150 4.7556 27 6 8.3335 -3.4123 5.7219 28 6 9.2536 -2.6676 6.6858 29 6 8.4650 -1.6642 7.5224 30 6 7.0608 -2.2096 7.8001 31 6 3.5881 -0.7103 1.3035 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 2.2490 -1.6318 -1.1527 36 1 3.0608 -0.4625 -5.4349 37 1 0.6911 -0.2173 2.9045 38 1 1.7231 1.1447 2.3576 39 1 2.4044 -1.1666 4.1665 40 1 3.0830 0.4835 4.1390 41 1 7.4655 -2.9131 3.8115 42 1 8.3682 -1.5831 4.5794 43 1 7.5563 -3.9271 6.2867 44 1 8.9142 -4.1410 5.1563 45 1 9.7361 -3.3862 7.3485 46 1 10.0170 -2.1379 6.1159 47 1 8.9813 -1.4950 8.4673 48 1 8.3858 -0.7225 6.9792 49 1 7.0972 -3.2975 7.8567 50 1 6.6940 -1.8078 8.7446 51 1 3.9747 0.2316 0.9142 52 1 3.9951 -1.5489 0.7388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754807060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:56 Heat of formation + Delta-G solvation = 41.888722 kcal Electronic energy + Delta-G solvation = -31070.173376 eV Core-core repulsion = 27070.861689 eV Total energy + Delta-G solvation = -3999.311687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.07909 -39.73486 -37.91254 -37.66539 -35.27123 -33.22261 -32.43429 -31.36252 -31.01202 -30.34614 -28.84299 -28.34452 -25.83188 -24.88736 -24.67909 -23.61815 -22.27942 -21.28280 -20.15882 -19.89468 -19.78011 -19.04740 -17.94078 -17.54857 -16.88619 -16.30300 -15.96746 -15.37096 -15.19402 -14.90276 -14.73265 -14.15426 -14.03291 -13.70987 -13.61635 -13.56478 -13.42515 -12.93656 -12.73469 -12.58646 -12.51410 -12.30357 -12.10131 -12.05369 -11.80033 -11.67786 -11.51449 -11.39542 -11.09716 -10.96443 -10.78803 -10.78061 -10.61684 -10.52933 -10.45697 -10.19037 -9.93580 -9.82328 -9.52215 -9.50927 -8.88491 -8.86802 -8.42960 -7.22075 -5.71249 -3.06619 1.45223 1.87985 2.55332 3.11152 3.43344 3.44517 3.48907 3.52568 4.13441 4.25311 4.40919 4.45509 4.65617 4.68341 4.72898 4.79623 4.81878 4.93454 4.98544 5.05323 5.09177 5.18356 5.39438 5.45280 5.49460 5.56309 5.57698 5.61213 5.65307 5.69055 5.75448 5.82132 5.85517 5.89292 5.90112 5.93102 6.08508 6.09426 6.11763 6.14651 6.26211 6.33593 6.35153 6.41634 6.46728 6.57417 6.75469 6.82519 7.03482 7.57277 7.69341 8.04356 8.28318 8.47746 9.26196 9.99078 10.18472 11.47142 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002554 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.574506 B =10958.939850 C =12324.119782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.881 3.119 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.125 4.125 16 C 0.112 3.888 17 N -0.606 5.606 18 C 0.611 3.389 19 O -0.529 6.529 20 C 0.000 4.000 21 N -0.256 5.256 22 N -0.381 5.381 23 H 0.443 0.557 24 C 0.011 3.989 25 C -0.137 4.137 26 C -0.047 4.047 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.114 4.114 30 C -0.048 4.048 31 C 0.119 3.881 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -3.903 32.086 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.163 4.163 16 C -0.011 4.011 17 N -0.340 5.340 18 C 0.397 3.603 19 O -0.404 6.404 20 C -0.160 4.160 21 N -0.092 5.092 22 N -0.095 5.095 23 H 0.287 0.713 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.085 4.085 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.152 4.152 30 C -0.087 4.087 31 C -0.003 4.003 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.252 -3.492 31.597 32.398 hybrid contribution 0.611 -1.450 0.342 1.610 sum 6.863 -4.942 31.939 33.040 Atomic orbital electron populations 1.22398 0.98574 1.00883 1.00501 1.20132 0.92075 0.95459 0.84328 0.92412 1.42796 1.79730 1.09508 1.07137 1.19037 1.36878 0.95558 0.85516 0.89214 1.24647 1.01404 0.97417 0.95587 1.69693 1.52773 1.35559 1.00252 0.86590 0.78048 0.86924 0.77259 1.21247 1.21787 1.20127 1.22786 0.94081 1.00281 0.95463 0.90219 1.22776 0.97894 1.00969 0.94680 1.22024 0.86043 0.99229 0.93817 1.48383 1.15160 1.61633 1.08783 1.16488 0.81261 0.77819 0.84714 1.90800 1.41886 1.49308 1.58409 1.21703 0.93655 1.07084 0.93591 1.73829 1.24651 1.20498 0.90224 1.43186 1.12691 1.46061 1.07521 0.71304 1.21113 0.88717 1.05009 0.96700 1.19888 0.97605 1.06119 0.91061 1.20011 0.91386 0.98470 0.98647 1.21705 0.98908 0.98045 0.97422 1.21527 0.98175 0.98133 0.98016 1.21521 0.93802 0.99562 1.00344 1.20237 0.93032 1.01932 0.93512 1.22300 0.95119 1.03166 0.79670 0.93643 0.94062 0.92297 0.80668 0.93122 0.90075 0.90277 0.91338 0.91321 0.89310 0.90727 0.91474 0.91463 0.92056 0.91599 0.91235 0.91375 0.89123 0.90973 0.90511 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.34 37.16 0.35 -2.38 16 2 C 0.19 3.49 2.41 -67.93 -0.16 3.33 16 3 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 4 N -0.75 -17.45 4.62 -53.42 -0.25 -17.70 16 5 C -0.24 -6.73 10.41 -15.06 -0.16 -6.88 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 7 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 8 N -0.93 -29.70 13.97 55.49 0.78 -28.92 16 9 Si 0.88 22.72 27.73 -169.99 -4.71 18.00 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 12 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 13 C -0.11 -1.63 2.63 -88.25 -0.23 -1.86 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.49 5.62 -24.68 -0.14 -1.63 16 16 C 0.11 1.39 5.54 -3.07 -0.02 1.37 16 17 N -0.61 -9.52 3.33 -171.68 -0.57 -10.09 16 18 C 0.61 10.32 7.86 -12.39 -0.10 10.22 16 19 O -0.53 -10.47 15.50 5.31 0.08 -10.38 16 20 C 0.00 0.00 6.97 -82.88 -0.58 -0.58 16 21 N -0.26 -2.96 9.79 33.35 0.33 -2.64 16 22 N -0.38 -3.10 6.83 33.42 0.23 -2.87 16 23 H 0.44 1.86 8.96 -190.31 -1.71 0.16 16 24 C 0.01 0.09 6.38 -82.39 -0.53 -0.44 16 25 C -0.14 -1.61 5.68 -104.84 -0.60 -2.21 16 26 C -0.05 -0.52 5.29 -27.93 -0.15 -0.67 16 27 C -0.12 -0.97 5.54 -26.80 -0.15 -1.12 16 28 C -0.12 -0.73 5.64 -27.11 -0.15 -0.88 16 29 C -0.11 -0.63 5.64 -26.84 -0.15 -0.78 16 30 C -0.05 -0.25 5.55 -27.80 -0.15 -0.41 16 31 C 0.12 2.06 6.09 -2.53 -0.02 2.04 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.56 7.51 -51.93 -0.39 0.17 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.36 8.44 5.66 -40.82 -0.23 8.20 16 36 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 39 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 40 H 0.07 0.81 7.76 -51.93 -0.40 0.41 16 41 H 0.09 1.20 6.90 -51.93 -0.36 0.84 16 42 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 43 H 0.07 0.51 5.66 -51.93 -0.29 0.22 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 49 H 0.09 0.44 6.35 -51.93 -0.33 0.11 16 50 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 52 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -34.90 398.39 -11.12 -46.02 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.98 Total: 5.38 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.02 Total: -2.80 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.51 Total: -62.23 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.90 -11.12 -46.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754807060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.907 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds