Wall clock time and date at job start Wed Apr 1 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46863 * 2 1 4 4 N 1.46503 * 109.46931 * 240.00145 * 2 1 3 5 5 C 1.36929 * 120.00227 * 85.00110 * 4 2 1 6 6 H 1.08008 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00493 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00651 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99347 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47342 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46765 * 209.99832 * 9 7 5 12 12 H 1.48498 * 109.47537 * 329.99839 * 9 7 5 13 13 C 1.53002 * 109.47187 * 120.00032 * 2 1 3 14 14 H 1.09000 * 110.88398 * 57.57472 * 13 2 1 15 15 C 1.55552 * 110.99828 * 293.66709 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34776 * 125.65214 * 181.01647 * 17 16 15 19 19 O 1.21565 * 120.00846 * 179.97438 * 18 17 16 20 20 C 1.47718 * 119.99571 * 359.97438 * 18 17 16 21 21 N 1.32046 * 126.64792 * 359.68536 * 20 18 17 22 22 N 1.28676 * 110.10868 * 179.84935 * 21 20 18 23 23 H 0.97001 * 124.94405 * 179.71289 * 22 21 20 24 24 C 1.34755 * 110.10573 * 359.95764 * 22 21 20 25 25 C 1.35205 * 107.18216 * 0.49961 * 24 22 21 26 26 C 1.50377 * 126.23393 * 178.65163 * 25 24 22 27 27 C 1.53207 * 109.09142 * 27.88747 * 26 25 24 28 28 C 1.52652 * 109.59492 * 271.31227 * 27 26 25 29 29 C 1.52610 * 110.81878 * 61.52830 * 28 27 26 30 30 C 1.50690 * 127.38179 * 180.75810 * 24 22 21 31 31 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 32 32 H 1.09005 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47079 * 299.99923 * 1 2 3 34 34 H 1.08993 * 109.47389 * 60.00089 * 1 2 3 35 35 H 0.97004 * 119.99825 * 264.99767 * 4 2 1 36 36 H 0.96991 * 120.00258 * 180.02562 * 8 7 5 37 37 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 38 38 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 39 39 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 40 40 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 41 41 H 1.09007 * 109.53241 * 147.76813 * 26 25 24 42 42 H 1.09000 * 109.53208 * 267.99881 * 26 25 24 43 43 H 1.09000 * 109.45334 * 31.35216 * 27 26 25 44 44 H 1.09000 * 109.45165 * 151.30296 * 27 26 25 45 45 H 1.09007 * 109.21179 * 181.86993 * 28 27 26 46 46 H 1.08998 * 109.21183 * 301.18196 * 28 27 26 47 47 H 1.08994 * 109.41579 * 153.73074 * 29 28 27 48 48 H 1.08997 * 109.41271 * 273.59142 * 29 28 27 49 49 H 1.08997 * 109.52231 * 106.91860 * 30 24 22 50 50 H 1.09002 * 109.57525 * 346.76265 * 30 24 22 51 51 H 1.08997 * 110.36526 * 94.70985 * 31 17 16 52 52 H 1.08992 * 110.36633 * 216.92450 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8918 1.0404 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.7375 -0.0053 -4.6430 9 14 3.0578 -2.4738 -3.4248 10 1 1.8612 -3.2932 -3.7441 11 1 4.1334 -2.7652 -4.4063 12 1 3.5330 -2.8037 -2.0571 13 6 2.0400 -0.7213 1.2492 14 1 1.6547 -1.7399 1.2943 15 6 1.6762 0.0707 2.5377 16 6 2.7766 -0.3654 3.5279 17 7 3.9165 -0.8474 2.7342 18 6 5.0702 -1.3347 3.2320 19 8 5.9485 -1.7067 2.4783 20 6 5.2676 -1.4168 4.6937 21 7 4.4097 -1.0470 5.6268 22 7 4.9063 -1.2614 6.7944 23 1 4.4598 -1.0647 7.6327 24 6 6.1391 -1.7942 6.6827 25 6 6.4106 -1.8994 5.3624 26 6 7.6863 -2.4150 4.7556 27 6 8.3335 -3.4123 5.7219 28 6 9.2536 -2.6676 6.6858 29 6 8.4650 -1.6642 7.5224 30 6 7.0608 -2.2096 7.8001 31 6 3.5881 -0.7103 1.3035 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 2.2490 -1.6318 -1.1527 36 1 3.0608 -0.4625 -5.4349 37 1 0.6911 -0.2173 2.9045 38 1 1.7231 1.1447 2.3576 39 1 2.4044 -1.1666 4.1665 40 1 3.0830 0.4835 4.1390 41 1 7.4655 -2.9131 3.8115 42 1 8.3682 -1.5831 4.5794 43 1 7.5563 -3.9271 6.2867 44 1 8.9142 -4.1410 5.1563 45 1 9.7361 -3.3862 7.3485 46 1 10.0170 -2.1379 6.1159 47 1 8.9813 -1.4950 8.4673 48 1 8.3858 -0.7225 6.9792 49 1 7.0972 -3.2975 7.8567 50 1 6.6940 -1.8078 8.7446 51 1 3.9747 0.2316 0.9142 52 1 3.9951 -1.5489 0.7388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754807060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:52 Heat of formation + Delta-G solvation = 18.543257 kcal Electronic energy + Delta-G solvation = -31071.185711 eV Core-core repulsion = 27070.861689 eV Total energy + Delta-G solvation = -4000.324022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -43.89569 -40.99586 -39.06380 -38.48064 -36.91140 -34.38536 -33.94269 -32.51273 -31.99816 -31.37442 -30.33546 -29.64585 -26.47809 -26.06543 -25.46608 -25.35746 -23.36079 -22.75965 -21.32022 -20.84670 -20.50722 -20.20898 -19.50492 -18.70186 -17.99431 -17.34873 -17.10186 -16.59271 -16.42302 -16.02296 -15.68953 -15.52869 -15.45161 -14.96030 -14.59216 -14.41893 -14.30692 -14.21544 -14.08341 -13.99000 -13.83640 -13.58298 -13.30464 -13.20792 -12.98145 -12.78601 -12.61975 -12.47083 -12.26527 -12.08865 -12.05014 -11.93338 -11.76360 -11.71258 -11.65489 -11.46048 -11.36572 -11.30968 -11.01334 -10.97098 -10.39173 -9.75933 -9.58753 -9.29768 -8.01378 -5.32551 0.45232 1.05969 1.35579 1.38982 1.44694 1.72149 2.10233 2.25671 2.47823 3.19056 3.30960 3.42736 3.63069 3.66031 3.76108 3.84819 3.95815 3.99690 4.07207 4.21205 4.22675 4.32347 4.37589 4.40343 4.50658 4.51603 4.60222 4.62885 4.71777 4.82599 4.86435 4.89747 4.93547 4.97842 4.99727 5.07288 5.08504 5.10952 5.12376 5.22476 5.28198 5.31746 5.33704 5.39256 5.41645 5.46229 5.57842 5.62545 5.80219 6.11136 6.23543 6.42636 6.78206 7.05157 7.09920 7.87602 8.04352 9.20512 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002554 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.574506 B =10958.939850 C =12324.119782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.061 0.939 7 C -0.064 4.064 8 N -0.985 5.985 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.261 1.261 13 C -0.095 4.095 14 H 0.087 0.913 15 C -0.111 4.111 16 C 0.114 3.886 17 N -0.608 5.608 18 C 0.600 3.400 19 O -0.575 6.575 20 C -0.033 4.033 21 N -0.256 5.256 22 N -0.357 5.357 23 H 0.463 0.537 24 C 0.035 3.965 25 C -0.165 4.165 26 C -0.044 4.044 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.113 4.113 30 C -0.047 4.047 31 C 0.120 3.880 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.048 0.952 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.056 0.944 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 -4.902 37.430 38.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.075 3.925 3 H 0.065 0.935 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.079 0.921 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.186 1.186 13 C -0.115 4.115 14 H 0.105 0.895 15 C -0.150 4.150 16 C -0.007 4.007 17 N -0.340 5.340 18 C 0.389 3.611 19 O -0.454 6.454 20 C -0.191 4.191 21 N -0.093 5.093 22 N -0.074 5.074 23 H 0.312 0.688 24 C -0.092 4.092 25 C -0.175 4.175 26 C -0.083 4.083 27 C -0.154 4.154 28 C -0.156 4.156 29 C -0.151 4.151 30 C -0.085 4.085 31 C -0.003 4.003 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.194 0.806 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.067 0.933 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.075 0.925 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.194 -4.476 37.037 37.666 hybrid contribution 0.924 -1.023 -1.199 1.828 sum 6.119 -5.499 35.838 36.770 Atomic orbital electron populations 1.22244 0.96276 1.01524 1.01256 1.20389 0.93528 0.94824 0.83710 0.93486 1.42871 1.79984 1.09567 1.07267 1.19016 1.34224 0.94480 0.87060 0.92096 1.25380 1.02824 1.01858 0.95450 1.69858 1.55216 1.37426 1.01096 0.85536 0.77668 0.81815 0.77532 1.20202 1.22688 1.18648 1.22622 0.92135 1.00970 0.95729 0.89486 1.22815 0.99278 1.00846 0.92011 1.22191 0.84875 0.99931 0.93726 1.48476 1.15874 1.61344 1.08291 1.17043 0.80880 0.77085 0.86103 1.90759 1.43395 1.51303 1.59904 1.21369 0.95533 1.09906 0.92310 1.73718 1.24350 1.20412 0.90839 1.43296 1.12490 1.44154 1.07483 0.68778 1.21520 0.88678 1.02643 0.96392 1.20087 0.97407 1.07461 0.92571 1.19917 0.91660 0.98612 0.98097 1.21675 0.99267 0.97329 0.97169 1.21519 0.97695 0.98562 0.97870 1.21524 0.94185 0.98319 1.01061 1.20437 0.91866 1.02846 0.93393 1.22108 0.96695 1.00704 0.80781 0.93027 0.89909 0.94934 0.80579 0.93541 0.86665 0.89512 0.90055 0.90306 0.92981 0.91856 0.90698 0.91583 0.89977 0.92360 0.88720 0.93280 0.87837 0.87520 0.92530 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.34 71.98 0.67 -4.11 16 2 C 0.18 6.62 2.41 44.99 0.11 6.73 16 3 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 4 N -0.75 -35.46 4.62 -322.93 -1.49 -36.95 16 5 C -0.22 -12.50 10.41 84.04 0.87 -11.63 16 6 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 7 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 8 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 9 Si 0.95 48.27 27.73 68.60 1.90 50.17 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 12 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 13 C -0.09 -2.78 2.63 -9.26 -0.02 -2.81 16 14 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -2.29 5.62 31.92 0.18 -2.11 16 16 C 0.11 2.59 5.54 86.73 0.48 3.07 16 17 N -0.61 -19.29 3.33 -815.35 -2.71 -22.00 16 18 C 0.60 21.23 7.86 86.75 0.68 21.91 16 19 O -0.58 -24.68 15.50 -3.92 -0.06 -24.74 16 20 C -0.03 -0.92 6.97 42.28 0.29 -0.62 16 21 N -0.26 -5.39 9.79 -48.41 -0.47 -5.86 16 22 N -0.36 -4.64 6.83 -48.17 -0.33 -4.97 16 23 H 0.46 1.82 8.96 -219.88 -1.97 -0.15 16 24 C 0.03 0.50 6.38 41.41 0.26 0.77 16 25 C -0.17 -3.86 5.68 -20.00 -0.11 -3.97 16 26 C -0.04 -1.04 5.29 29.82 0.16 -0.89 16 27 C -0.12 -1.74 5.54 30.55 0.17 -1.58 16 28 C -0.12 -1.18 5.64 30.35 0.17 -1.01 16 29 C -0.11 -0.88 5.64 30.52 0.17 -0.71 16 30 C -0.05 -0.29 5.55 29.90 0.17 -0.13 16 31 C 0.12 4.28 6.09 86.85 0.53 4.81 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 1.90 7.51 -2.39 -0.02 1.89 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.36 16.87 5.66 -92.71 -0.52 16.35 16 36 H 0.26 16.18 8.31 -92.71 -0.77 15.40 16 37 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.70 8.02 -2.39 -0.02 1.69 16 39 H 0.08 1.68 7.67 -2.39 -0.02 1.66 16 40 H 0.08 1.66 7.76 -2.39 -0.02 1.64 16 41 H 0.05 1.57 6.90 -2.38 -0.02 1.56 16 42 H 0.06 1.54 7.83 -2.39 -0.02 1.52 16 43 H 0.07 0.99 5.66 -2.39 -0.01 0.98 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.06 0.67 8.09 -2.39 -0.02 0.65 16 47 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.05 0.59 7.79 -2.39 -0.02 0.57 16 49 H 0.10 0.51 6.35 -2.39 -0.02 0.49 16 50 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 51 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 52 H 0.05 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -82.56 398.39 0.77 -81.79 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -1.62 Total: 22.92 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.25 Total: 4.30 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -4.70 Total: -134.45 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.90 Total: 50.17 kcal Total: -82.56 0.77 -81.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754807060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.334 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds