Wall clock time and date at job start Wed Apr 1 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46815 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99553 * 2 1 3 5 5 C 1.50696 * 109.46680 * 65.00220 * 4 2 1 6 6 O 1.21283 * 120.00640 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99755 * 179.72550 * 5 4 2 8 8 C 1.46507 * 120.00119 * 180.27421 * 7 5 4 9 9 C 1.53001 * 115.54742 * 179.91044 * 8 7 5 10 10 C 1.53042 * 109.45694 * 85.65280 * 9 8 7 11 11 C 1.53195 * 109.30982 * 178.61206 * 10 9 8 12 12 N 1.46923 * 108.77624 * 54.63260 * 11 10 9 13 13 C 1.36942 * 120.63330 * 126.37154 * 12 11 10 14 14 H 1.07994 * 120.00380 * 207.98806 * 13 12 11 15 15 C 1.38813 * 119.99753 * 27.98197 * 13 12 11 16 16 N 1.31622 * 120.00049 * 17.50486 * 15 13 12 17 17 Si 1.86800 * 120.00026 * 197.50677 * 15 13 12 18 18 H 1.48497 * 109.47226 * 94.06492 * 17 15 13 19 19 H 1.48498 * 109.47131 * 214.06497 * 17 15 13 20 20 H 1.48499 * 109.46989 * 334.06772 * 17 15 13 21 21 C 1.46929 * 118.73960 * 306.39179 * 12 11 10 22 22 C 1.53037 * 109.46276 * 325.58133 * 9 8 7 23 23 C 1.52999 * 117.49849 * 34.20355 * 8 7 5 24 24 C 1.52999 * 117.49582 * 325.57869 * 8 7 5 25 25 N 1.46503 * 109.47431 * 119.99720 * 2 1 3 26 26 C 1.36876 * 126.39935 * 240.00586 * 25 2 1 27 27 C 1.34665 * 106.82111 * 179.97438 * 26 25 2 28 28 N 1.34132 * 108.01691 * 359.97438 * 27 26 25 29 29 C 1.30490 * 109.25915 * 359.72721 * 28 27 26 30 30 H 1.08996 * 109.47282 * 60.00508 * 1 2 3 31 31 H 1.09004 * 109.46899 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47252 * 300.00235 * 1 2 3 33 33 H 1.08996 * 109.46945 * 305.00186 * 4 2 1 34 34 H 1.08999 * 109.46599 * 184.99780 * 4 2 1 35 35 H 0.97000 * 119.99782 * 0.26947 * 7 5 4 36 36 H 1.09001 * 109.45540 * 205.60825 * 9 8 7 37 37 H 1.09001 * 109.49956 * 298.55633 * 10 9 8 38 38 H 1.08997 * 109.49786 * 58.66339 * 10 9 8 39 39 H 1.09007 * 109.58761 * 294.84670 * 11 10 9 40 40 H 1.08997 * 109.58723 * 174.42126 * 11 10 9 41 41 H 0.96998 * 119.99819 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.58490 * 293.82315 * 21 12 11 43 43 H 1.09003 * 109.58543 * 173.39408 * 21 12 11 44 44 H 1.09003 * 109.49735 * 301.33767 * 22 9 8 45 45 H 1.08998 * 109.49774 * 61.40728 * 22 9 8 46 46 H 1.08997 * 117.49808 * 359.97438 * 23 8 7 47 47 H 1.08998 * 117.49997 * 145.02504 * 23 8 7 48 48 H 1.08996 * 117.49727 * 214.97645 * 24 8 7 49 49 H 1.08994 * 117.50108 * 359.97438 * 24 8 7 50 50 H 1.08006 * 126.59045 * 0.02697 * 26 25 2 51 51 H 1.08005 * 125.99623 * 179.97438 * 27 26 25 52 52 H 1.07996 * 125.65530 * 180.29603 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0110 1.0868 -2.3634 7 7 1.9897 -0.3889 -3.6998 8 6 1.6073 0.3708 -4.8927 9 6 2.0569 -0.2265 -6.2276 10 6 1.0252 -1.2536 -6.6998 11 6 1.4611 -1.8241 -8.0531 12 7 2.8254 -2.3541 -7.9255 13 6 3.1111 -3.6417 -8.2938 14 1 3.9219 -4.1725 -7.8172 15 6 2.3584 -4.2648 -9.2797 16 7 1.6159 -3.5453 -10.0942 17 14 2.3990 -6.1245 -9.4505 18 1 1.2724 -6.7166 -8.6855 19 1 2.2722 -6.4930 -10.8834 20 1 3.6850 -6.6425 -8.9181 21 6 3.8775 -1.4763 -7.3949 22 6 3.4146 -0.9097 -6.0490 23 6 1.5707 1.8960 -4.7772 24 6 0.2646 1.1037 -4.8631 25 7 2.0184 -0.6906 1.1962 26 6 2.8085 -0.1552 2.1774 27 6 3.0183 -1.1292 3.0834 28 7 2.3735 -2.2291 2.6670 29 6 1.7673 -1.9721 1.5404 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 2.4936 -1.2128 -3.7903 36 1 2.1446 0.5673 -6.9694 37 1 0.9550 -2.0606 -5.9704 38 1 0.0533 -0.7713 -6.8043 39 1 1.4444 -1.0349 -8.8049 40 1 0.7836 -2.6258 -8.3469 41 1 1.0896 -3.9807 -10.7829 42 1 4.0579 -0.6589 -8.0929 43 1 4.7945 -2.0487 -7.2544 44 1 4.1433 -0.1828 -5.6903 45 1 3.3220 -1.7196 -5.3254 46 1 1.8307 2.3341 -3.8136 47 1 1.8670 2.4742 -5.6524 48 1 -0.2982 1.1608 -5.7947 49 1 -0.3344 1.0203 -3.9563 50 1 3.1896 0.8545 2.2178 51 1 3.6033 -1.0403 3.9870 52 1 1.1667 -2.6694 0.9753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755869844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:02 Heat of formation + Delta-G solvation = 74.742916 kcal Electronic energy + Delta-G solvation = -31052.508817 eV Core-core repulsion = 27054.621795 eV Total energy + Delta-G solvation = -3997.887022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.36754 -40.72279 -38.39353 -36.48579 -35.54078 -33.28985 -32.84757 -31.17512 -30.41330 -29.82769 -29.49010 -28.31920 -25.63331 -23.93450 -22.87410 -22.69103 -21.83459 -21.61675 -21.23334 -20.21376 -19.95128 -18.96055 -17.97486 -17.19227 -16.73799 -15.95755 -15.70554 -15.40874 -15.06364 -14.86319 -14.34299 -14.15159 -14.04053 -13.86024 -13.72327 -13.63099 -13.59770 -13.42519 -13.20573 -12.98384 -12.88232 -12.38441 -12.33113 -11.95775 -11.70744 -11.55947 -11.39123 -11.13511 -11.03380 -10.78767 -10.76087 -10.47349 -10.32283 -10.20505 -10.13495 -9.99879 -9.95912 -9.79268 -9.62258 -9.42414 -8.76952 -8.60661 -8.49301 -6.73501 -5.84401 -3.27010 1.79734 2.29032 2.34110 2.95470 3.03661 3.33477 3.41116 3.42101 3.98821 4.03095 4.27180 4.37941 4.44659 4.47242 4.61799 4.69447 4.75518 4.97561 5.02021 5.05583 5.13285 5.17600 5.26586 5.32394 5.35613 5.42730 5.48313 5.51430 5.62087 5.66552 5.80078 5.82506 5.87931 6.02465 6.03683 6.09317 6.22717 6.36212 6.38284 6.46011 6.48857 6.57232 6.63750 6.66630 6.73916 6.86699 6.91793 7.30037 7.35063 7.59540 7.74401 7.84156 7.98942 8.39479 9.15824 9.79209 10.35675 11.23998 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.002452 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.407690 B =11417.762937 C =12781.776064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.109 0.891 4 C -0.155 4.155 5 C 0.519 3.481 6 O -0.537 6.537 7 N -0.684 5.684 8 C 0.107 3.893 9 C -0.042 4.042 10 C -0.132 4.132 11 C 0.170 3.830 12 N -0.592 5.592 13 C -0.254 4.254 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.145 3.855 22 C -0.126 4.126 23 C -0.179 4.179 24 C -0.174 4.174 25 N -0.454 5.454 26 C -0.055 4.055 27 C -0.033 4.033 28 N -0.497 5.497 29 C 0.182 3.818 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.408 0.592 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.172 0.828 51 H 0.168 0.832 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 10.012 19.031 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.127 0.873 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.415 6.415 7 N -0.334 5.334 8 C 0.020 3.980 9 C -0.061 4.061 10 C -0.171 4.171 11 C 0.044 3.956 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.018 3.982 22 C -0.165 4.165 23 C -0.217 4.217 24 C -0.212 4.212 25 N -0.137 5.137 26 C -0.188 4.188 27 C -0.181 4.181 28 N -0.215 5.215 29 C -0.100 4.100 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.968 9.966 19.238 21.688 hybrid contribution 0.271 -0.580 -0.610 0.885 sum -0.697 9.385 18.628 20.870 Atomic orbital electron populations 1.22304 0.92273 1.03140 1.04736 1.21127 0.96272 0.96766 0.81012 0.87307 1.22032 1.04035 1.01107 0.92436 1.20158 0.79466 0.85638 0.84290 1.90652 1.39990 1.24317 1.86550 1.45430 1.56286 1.27252 1.04401 1.20982 1.00724 0.90102 0.86194 1.20790 0.96258 0.98038 0.91043 1.22239 0.96505 0.97185 1.01160 1.20788 0.87077 0.97480 0.90235 1.44067 1.03016 1.10178 1.74213 1.19186 1.16539 0.88059 1.14557 0.91697 1.25044 1.00946 0.98204 0.95404 1.70037 1.32215 1.33764 1.18568 0.86293 0.77905 0.85729 0.76953 1.21472 1.21768 1.20387 1.20886 0.92308 0.93452 0.91513 1.22027 0.95486 0.98680 1.00332 1.23429 1.01642 0.93298 1.03346 1.23330 0.91223 1.03309 1.03372 1.45798 1.37894 1.11581 1.18440 1.22771 1.02504 1.01308 0.92261 1.22310 1.04795 0.89596 1.01409 1.70311 1.12287 1.28166 1.10701 1.24907 1.03711 0.85481 0.95909 0.88221 0.92105 0.91902 0.87849 0.87997 0.75486 0.90298 0.92801 0.93057 0.96440 0.89476 0.93615 0.96405 0.92743 0.92919 0.92739 0.87777 0.89085 0.88835 0.87725 0.81046 0.81485 0.78245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.98 37.16 0.33 -0.93 16 2 C 0.15 1.12 2.70 -67.92 -0.18 0.94 16 3 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 4 C -0.16 -1.12 5.18 -27.88 -0.14 -1.26 16 5 C 0.52 5.18 7.25 -10.99 -0.08 5.10 16 6 O -0.54 -6.43 9.44 5.55 0.05 -6.38 16 7 N -0.68 -7.43 5.39 -47.61 -0.26 -7.69 16 8 C 0.11 1.36 2.48 -131.82 -0.33 1.03 16 9 C -0.04 -0.62 2.28 -90.58 -0.21 -0.83 16 10 C -0.13 -2.28 5.22 -26.61 -0.14 -2.42 16 11 C 0.17 3.81 5.31 -3.71 -0.02 3.79 16 12 N -0.59 -13.94 2.99 -172.32 -0.52 -14.45 16 13 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 14 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 15 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 16 N -0.90 -25.47 11.22 55.49 0.62 -24.85 16 17 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 C 0.14 2.80 6.52 -3.71 -0.02 2.78 16 22 C -0.13 -1.89 4.83 -26.61 -0.13 -2.02 16 23 C -0.18 -2.23 9.36 -26.73 -0.25 -2.48 16 24 C -0.17 -2.23 8.91 -26.73 -0.24 -2.47 16 25 N -0.45 -3.79 2.62 -111.46 -0.29 -4.08 16 26 C -0.06 -0.46 11.54 -16.57 -0.19 -0.65 16 27 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 28 N -0.50 -5.85 11.25 -14.67 -0.16 -6.02 16 29 C 0.18 1.72 11.65 -90.38 -1.05 0.67 16 30 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 31 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 4.11 6.66 -40.82 -0.27 3.84 16 36 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.83 7.24 -51.93 -0.38 0.45 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.79 6.50 -51.93 -0.34 0.46 16 46 H 0.10 1.37 6.37 -51.93 -0.33 1.04 16 47 H 0.09 1.07 8.05 -51.93 -0.42 0.66 16 48 H 0.09 1.18 7.60 -51.93 -0.39 0.79 16 49 H 0.10 1.41 6.38 -51.93 -0.33 1.08 16 50 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 51 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 52 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -31.02 402.18 -11.12 -42.14 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.50 Total: 5.31 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.09 Total: -6.13 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.61 Total: -57.09 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: 0.05 Total: -6.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.02 -11.12 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755869844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.882 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds