Wall clock time and date at job start Wed Apr 1 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46815 * 2 1 4 4 C 1.53005 * 109.47082 * 239.99553 * 2 1 3 5 5 C 1.50696 * 109.46680 * 65.00220 * 4 2 1 6 6 O 1.21283 * 120.00640 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99755 * 179.72550 * 5 4 2 8 8 C 1.46507 * 120.00119 * 180.27421 * 7 5 4 9 9 C 1.53001 * 115.54742 * 179.91044 * 8 7 5 10 10 C 1.53042 * 109.45694 * 85.65280 * 9 8 7 11 11 C 1.53195 * 109.30982 * 178.61206 * 10 9 8 12 12 N 1.46923 * 108.77624 * 54.63260 * 11 10 9 13 13 C 1.36942 * 120.63330 * 126.37154 * 12 11 10 14 14 H 1.07994 * 120.00380 * 207.98806 * 13 12 11 15 15 C 1.38813 * 119.99753 * 27.98197 * 13 12 11 16 16 N 1.31622 * 120.00049 * 17.50486 * 15 13 12 17 17 Si 1.86800 * 120.00026 * 197.50677 * 15 13 12 18 18 H 1.48497 * 109.47226 * 94.06492 * 17 15 13 19 19 H 1.48498 * 109.47131 * 214.06497 * 17 15 13 20 20 H 1.48499 * 109.46989 * 334.06772 * 17 15 13 21 21 C 1.46929 * 118.73960 * 306.39179 * 12 11 10 22 22 C 1.53037 * 109.46276 * 325.58133 * 9 8 7 23 23 C 1.52999 * 117.49849 * 34.20355 * 8 7 5 24 24 C 1.52999 * 117.49582 * 325.57869 * 8 7 5 25 25 N 1.46503 * 109.47431 * 119.99720 * 2 1 3 26 26 C 1.36876 * 126.39935 * 240.00586 * 25 2 1 27 27 C 1.34665 * 106.82111 * 179.97438 * 26 25 2 28 28 N 1.34132 * 108.01691 * 359.97438 * 27 26 25 29 29 C 1.30490 * 109.25915 * 359.72721 * 28 27 26 30 30 H 1.08996 * 109.47282 * 60.00508 * 1 2 3 31 31 H 1.09004 * 109.46899 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47252 * 300.00235 * 1 2 3 33 33 H 1.08996 * 109.46945 * 305.00186 * 4 2 1 34 34 H 1.08999 * 109.46599 * 184.99780 * 4 2 1 35 35 H 0.97000 * 119.99782 * 0.26947 * 7 5 4 36 36 H 1.09001 * 109.45540 * 205.60825 * 9 8 7 37 37 H 1.09001 * 109.49956 * 298.55633 * 10 9 8 38 38 H 1.08997 * 109.49786 * 58.66339 * 10 9 8 39 39 H 1.09007 * 109.58761 * 294.84670 * 11 10 9 40 40 H 1.08997 * 109.58723 * 174.42126 * 11 10 9 41 41 H 0.96998 * 119.99819 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.58490 * 293.82315 * 21 12 11 43 43 H 1.09003 * 109.58543 * 173.39408 * 21 12 11 44 44 H 1.09003 * 109.49735 * 301.33767 * 22 9 8 45 45 H 1.08998 * 109.49774 * 61.40728 * 22 9 8 46 46 H 1.08997 * 117.49808 * 359.97438 * 23 8 7 47 47 H 1.08998 * 117.49997 * 145.02504 * 23 8 7 48 48 H 1.08996 * 117.49727 * 214.97645 * 24 8 7 49 49 H 1.08994 * 117.50108 * 359.97438 * 24 8 7 50 50 H 1.08006 * 126.59045 * 0.02697 * 26 25 2 51 51 H 1.08005 * 125.99623 * 179.97438 * 27 26 25 52 52 H 1.07996 * 125.65530 * 180.29603 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0110 1.0868 -2.3634 7 7 1.9897 -0.3889 -3.6998 8 6 1.6073 0.3708 -4.8927 9 6 2.0569 -0.2265 -6.2276 10 6 1.0252 -1.2536 -6.6998 11 6 1.4611 -1.8241 -8.0531 12 7 2.8254 -2.3541 -7.9255 13 6 3.1111 -3.6417 -8.2938 14 1 3.9219 -4.1725 -7.8172 15 6 2.3584 -4.2648 -9.2797 16 7 1.6159 -3.5453 -10.0942 17 14 2.3990 -6.1245 -9.4505 18 1 1.2724 -6.7166 -8.6855 19 1 2.2722 -6.4930 -10.8834 20 1 3.6850 -6.6425 -8.9181 21 6 3.8775 -1.4763 -7.3949 22 6 3.4146 -0.9097 -6.0490 23 6 1.5707 1.8960 -4.7772 24 6 0.2646 1.1037 -4.8631 25 7 2.0184 -0.6906 1.1962 26 6 2.8085 -0.1552 2.1774 27 6 3.0183 -1.1292 3.0834 28 7 2.3735 -2.2291 2.6670 29 6 1.7673 -1.9721 1.5404 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 2.4936 -1.2128 -3.7903 36 1 2.1446 0.5673 -6.9694 37 1 0.9550 -2.0606 -5.9704 38 1 0.0533 -0.7713 -6.8043 39 1 1.4444 -1.0349 -8.8049 40 1 0.7836 -2.6258 -8.3469 41 1 1.0896 -3.9807 -10.7829 42 1 4.0579 -0.6589 -8.0929 43 1 4.7945 -2.0487 -7.2544 44 1 4.1433 -0.1828 -5.6903 45 1 3.3220 -1.7196 -5.3254 46 1 1.8307 2.3341 -3.8136 47 1 1.8670 2.4742 -5.6524 48 1 -0.2982 1.1608 -5.7947 49 1 -0.3344 1.0203 -3.9563 50 1 3.1896 0.8545 2.2178 51 1 3.6033 -1.0403 3.9870 52 1 1.1667 -2.6694 0.9753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755869844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:01 Heat of formation + Delta-G solvation = 58.804475 kcal Electronic energy + Delta-G solvation = -31053.199960 eV Core-core repulsion = 27054.621795 eV Total energy + Delta-G solvation = -3998.578165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.02292 -41.62498 -39.57109 -37.71659 -36.37709 -34.56520 -34.15768 -32.09648 -31.84038 -31.41789 -30.14136 -28.96417 -27.36739 -24.78456 -24.20353 -24.06139 -22.95922 -22.38146 -22.10009 -21.25283 -20.90500 -20.19562 -18.78645 -18.61250 -17.83602 -16.87726 -16.66630 -16.48081 -16.17979 -15.84701 -15.57215 -15.27634 -15.09171 -14.94709 -14.77571 -14.71927 -14.53898 -14.50411 -14.31852 -14.10092 -13.90777 -13.82764 -13.10383 -13.02184 -12.95624 -12.64774 -12.55422 -12.54987 -12.29667 -12.26563 -12.04149 -11.90608 -11.89163 -11.71379 -11.52051 -11.11471 -10.93852 -10.90148 -10.67037 -10.54566 -10.50823 -9.53084 -9.42434 -8.66132 -7.86020 -5.30742 1.15745 1.47232 1.49045 1.53221 1.57449 1.66825 2.24782 2.26487 2.52223 2.99445 3.28232 3.42341 3.57343 3.62044 3.72611 3.75080 3.89182 3.92366 4.04799 4.05313 4.12661 4.26702 4.36969 4.44442 4.48874 4.51135 4.58390 4.61223 4.67776 4.73971 4.76275 4.81709 4.86036 4.88547 4.94794 5.04930 5.07622 5.18721 5.22604 5.27047 5.27593 5.37294 5.39605 5.40612 5.53440 5.63950 5.69027 5.79415 5.85536 6.28977 6.41021 6.53634 7.17107 7.17323 7.20701 7.89268 8.40067 9.20042 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.002452 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.407690 B =11417.762937 C =12781.776064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.109 0.891 4 C -0.146 4.146 5 C 0.520 3.480 6 O -0.555 6.555 7 N -0.684 5.684 8 C 0.112 3.888 9 C -0.033 4.033 10 C -0.115 4.115 11 C 0.176 3.824 12 N -0.609 5.609 13 C -0.258 4.258 14 H 0.068 0.932 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.963 3.037 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.267 1.267 21 C 0.139 3.861 22 C -0.112 4.112 23 C -0.170 4.170 24 C -0.176 4.176 25 N -0.451 5.451 26 C -0.051 4.051 27 C -0.058 4.058 28 N -0.537 5.537 29 C 0.176 3.824 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.062 0.938 39 H -0.007 1.007 40 H 0.050 0.950 41 H 0.248 0.752 42 H 0.011 0.989 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.198 0.802 51 H 0.180 0.820 52 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 10.397 20.853 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.127 0.873 4 C -0.186 4.186 5 C 0.308 3.692 6 O -0.435 6.435 7 N -0.335 5.335 8 C 0.024 3.976 9 C -0.052 4.052 10 C -0.154 4.154 11 C 0.050 3.950 12 N -0.333 5.333 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.791 3.209 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.192 1.192 21 C 0.013 3.987 22 C -0.151 4.151 23 C -0.208 4.208 24 C -0.215 4.215 25 N -0.134 5.134 26 C -0.185 4.185 27 C -0.204 4.204 28 N -0.256 5.256 29 C -0.106 4.106 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.011 0.989 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.215 0.785 51 H 0.197 0.803 52 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.181 10.364 21.096 23.505 hybrid contribution 0.056 -0.636 -1.183 1.344 sum -0.125 9.728 19.913 22.163 Atomic orbital electron populations 1.22226 0.92453 1.03389 1.03870 1.21080 0.96003 0.96678 0.80766 0.87296 1.21976 1.04781 1.01213 0.90646 1.20535 0.78718 0.85420 0.84551 1.90657 1.40740 1.25312 1.86793 1.45393 1.56599 1.27363 1.04117 1.20646 1.00703 0.90418 0.85846 1.20609 0.95300 0.97069 0.92254 1.21986 0.97819 0.97736 0.97864 1.20585 0.86355 0.95546 0.92489 1.44328 1.04355 1.10188 1.74398 1.19523 1.16016 0.89452 1.13823 0.91429 1.25764 1.01352 1.02008 0.95587 1.70190 1.33471 1.35129 1.19400 0.85317 0.78170 0.81124 0.76244 1.21363 1.22547 1.19167 1.21070 0.91491 0.92684 0.93408 1.21864 0.96025 0.99458 0.97726 1.23404 1.01029 0.92899 1.03456 1.23304 0.91332 1.03724 1.03118 1.45833 1.37646 1.11320 1.18551 1.23188 1.01650 1.02060 0.91564 1.22662 1.05514 0.89732 1.02529 1.70276 1.13694 1.29548 1.12115 1.25313 1.03515 0.86164 0.95612 0.89582 0.91340 0.92172 0.86297 0.86848 0.74868 0.90717 0.92946 0.91948 0.98862 0.93172 0.94252 0.97078 0.92646 0.90160 0.91741 0.88125 0.88373 0.88866 0.88273 0.78545 0.80324 0.76244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.98 71.98 0.65 -1.49 16 2 C 0.16 1.92 2.70 44.99 0.12 2.05 16 3 H 0.11 1.38 7.90 -2.39 -0.02 1.36 16 4 C -0.15 -1.64 5.18 29.85 0.15 -1.48 16 5 C 0.52 8.93 7.25 87.66 0.64 9.57 16 6 O -0.56 -12.06 9.44 -3.04 -0.03 -12.09 16 7 N -0.68 -12.83 5.39 -422.91 -2.28 -15.11 16 8 C 0.11 2.55 2.48 3.60 0.01 2.56 16 9 C -0.03 -0.91 2.28 -10.77 -0.02 -0.94 16 10 C -0.12 -3.88 5.22 30.67 0.16 -3.72 16 11 C 0.18 8.05 5.31 86.36 0.46 8.51 16 12 N -0.61 -28.76 2.99 -699.09 -2.09 -30.86 16 13 C -0.26 -13.59 9.58 84.03 0.81 -12.79 16 14 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 15 C -0.05 -2.82 4.90 84.86 0.42 -2.41 16 16 N -0.94 -54.45 11.22 21.65 0.24 -54.20 16 17 Si 0.96 43.83 29.59 68.60 2.03 45.86 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.14 5.21 6.52 86.36 0.56 5.78 16 22 C -0.11 -3.07 4.83 30.67 0.15 -2.92 16 23 C -0.17 -3.82 9.36 30.60 0.29 -3.53 16 24 C -0.18 -4.19 8.91 30.60 0.27 -3.91 16 25 N -0.45 -6.45 2.62 -506.54 -1.33 -7.78 16 26 C -0.05 -0.75 11.54 83.09 0.96 0.21 16 27 C -0.06 -1.06 11.87 83.52 0.99 -0.07 16 28 N -0.54 -12.09 11.25 -200.31 -2.25 -14.35 16 29 C 0.18 2.99 11.65 180.26 2.10 5.09 16 30 H 0.09 1.43 5.95 -2.39 -0.01 1.41 16 31 H 0.07 0.79 7.94 -2.38 -0.02 0.77 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 6.91 6.66 -92.71 -0.62 6.30 16 36 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.96 7.24 -2.39 -0.02 1.94 16 39 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 40 H 0.05 2.66 6.06 -2.39 -0.01 2.64 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.67 6.50 -2.39 -0.02 1.66 16 46 H 0.10 2.39 6.37 -2.39 -0.02 2.38 16 47 H 0.10 2.07 8.05 -2.39 -0.02 2.05 16 48 H 0.09 2.21 7.60 -2.39 -0.02 2.19 16 49 H 0.10 2.50 6.38 -2.39 -0.02 2.49 16 50 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 51 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 52 H 0.22 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.18 402.18 3.29 -64.88 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.30 Total: 23.13 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 8.70 Total: 0.51 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -7.71 Total: -122.29 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.03 Total: -12.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.18 3.29 -64.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755869844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.687 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds