Wall clock time and date at job start Wed Apr 1 2020 03:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47203 * 2 1 4 4 C 1.50695 * 109.46968 * 120.00262 * 2 1 3 5 5 O 1.21285 * 120.00103 * 93.66684 * 4 2 1 6 6 N 1.34775 * 119.99857 * 273.66494 * 4 2 1 7 7 C 1.46496 * 120.00035 * 0.02562 * 6 4 2 8 8 C 1.46505 * 119.99586 * 180.02562 * 6 4 2 9 9 C 1.50693 * 109.47259 * 90.00416 * 8 6 4 10 10 H 1.08000 * 120.00213 * 359.97438 * 9 8 6 11 11 C 1.37879 * 119.99770 * 179.97438 * 9 8 6 12 12 N 1.31509 * 120.00082 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99671 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47267 * 59.99906 * 13 11 9 15 15 H 1.48502 * 109.46941 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47336 * 299.99663 * 13 11 9 17 17 N 1.46901 * 109.46565 * 240.00154 * 2 1 3 18 18 C 1.46961 * 110.99499 * 186.78363 * 17 2 1 19 19 C 1.53054 * 109.36297 * 183.18740 * 18 17 2 20 20 N 1.46958 * 109.36618 * 301.60023 * 19 18 17 21 21 C 1.46894 * 110.99996 * 183.18904 * 20 19 18 22 22 C 1.50700 * 109.47200 * 169.99651 * 21 20 19 23 23 C 1.38675 * 120.41613 * 89.99707 * 22 21 20 24 24 C 1.38631 * 118.42160 * 180.02562 * 23 22 21 25 25 C 1.38226 * 119.15665 * 359.97438 * 24 23 22 26 26 N 1.31848 * 120.76869 * 0.02562 * 25 24 23 27 27 C 1.31891 * 121.72470 * 359.97438 * 26 25 24 28 28 C 1.46952 * 110.87902 * 59.31709 * 20 19 18 29 29 C 1.46953 * 111.00477 * 310.57994 * 17 2 1 30 30 H 1.09000 * 109.47300 * 299.99974 * 1 2 3 31 31 H 1.09002 * 109.47235 * 59.99738 * 1 2 3 32 32 H 1.08999 * 109.47696 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47239 * 90.00123 * 7 6 4 34 34 H 1.09007 * 109.47054 * 209.99906 * 7 6 4 35 35 H 1.08995 * 109.47264 * 329.99494 * 7 6 4 36 36 H 1.09011 * 109.46565 * 210.00146 * 8 6 4 37 37 H 1.09000 * 109.47366 * 329.99130 * 8 6 4 38 38 H 0.97002 * 119.99611 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.49133 * 63.22483 * 18 17 2 40 40 H 1.08998 * 109.50560 * 303.16212 * 18 17 2 41 41 H 1.08995 * 109.48661 * 181.62831 * 19 18 17 42 42 H 1.09002 * 109.50708 * 61.57695 * 19 18 17 43 43 H 1.09003 * 109.47435 * 49.99560 * 21 20 19 44 44 H 1.09005 * 109.46881 * 289.99746 * 21 20 19 45 45 H 1.08000 * 120.78682 * 359.75541 * 23 22 21 46 46 H 1.07998 * 120.41976 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.61438 * 180.02562 * 25 24 23 48 48 H 1.07995 * 119.61481 * 179.97438 * 27 26 25 49 49 H 1.09004 * 109.48848 * 60.65124 * 28 20 19 50 50 H 1.09005 * 109.48969 * 180.71216 * 28 20 19 51 51 H 1.09005 * 109.49200 * 296.78254 * 29 17 2 52 52 H 1.09005 * 109.48876 * 56.82336 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2978 -1.8929 1.1820 6 7 2.1865 -0.0318 2.3846 7 6 1.8654 1.3963 2.4431 8 6 2.6754 -0.7225 3.5806 9 6 4.1796 -0.6437 3.6266 10 1 4.7177 -0.1309 2.8431 11 6 4.8688 -1.2263 4.6690 12 7 4.2135 -1.8503 5.6233 13 14 6.7334 -1.1293 4.7256 14 1 7.1540 0.2942 4.7687 15 1 7.2288 -1.8282 5.9387 16 1 7.2998 -1.7764 3.5150 17 7 2.0195 -0.6925 -1.1995 18 6 3.4796 -0.8541 -1.1552 19 6 3.9576 -1.5064 -2.4547 20 7 3.2916 -2.8057 -2.6214 21 6 3.7812 -3.4982 -3.8208 22 6 3.2672 -4.9147 -3.8280 23 6 2.0570 -5.2194 -4.4328 24 6 1.6233 -6.5360 -4.4147 25 6 2.4063 -7.4946 -3.7994 26 7 3.5520 -7.1685 -3.2342 27 6 3.9957 -5.9265 -3.2323 28 6 1.8317 -2.6441 -2.6656 29 6 1.3537 -1.9918 -1.3662 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.8191 1.5223 2.7211 34 1 2.4994 1.8811 3.1856 35 1 2.0389 1.8481 1.4665 36 1 2.2593 -0.2481 4.4695 37 1 2.3669 -1.7674 3.5484 38 1 4.6984 -2.2599 6.3568 39 1 3.7500 -1.4868 -0.3099 40 1 3.9506 0.1226 -1.0439 41 1 5.0367 -1.6536 -2.4120 42 1 3.7117 -0.8609 -3.2979 43 1 4.8712 -3.5072 -3.8157 44 1 3.4264 -2.9783 -4.7107 45 1 1.4643 -4.4485 -4.9028 46 1 0.6856 -6.8092 -4.8756 47 1 2.0757 -8.5226 -3.7813 48 1 4.9389 -5.6975 -2.7588 49 1 1.5613 -2.0114 -3.5110 50 1 1.3608 -3.6209 -2.7768 51 1 1.5999 -2.6376 -0.5232 52 1 0.2744 -1.8447 -1.4084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125230322.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:21 Heat of formation + Delta-G solvation = 31.886385 kcal Electronic energy + Delta-G solvation = -31619.982575 eV Core-core repulsion = 27620.237155 eV Total energy + Delta-G solvation = -3999.745421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.52480 -40.03462 -38.22397 -35.80605 -34.72016 -33.10185 -32.56678 -31.97667 -30.87022 -30.44332 -27.83747 -27.18004 -25.91539 -24.81044 -24.00645 -23.62107 -23.02951 -21.78063 -21.40862 -19.80695 -18.27484 -17.22002 -16.70805 -16.52884 -16.48847 -16.34783 -15.66463 -15.33412 -14.84096 -14.73919 -14.60899 -14.36280 -14.24818 -14.07383 -13.71268 -13.52762 -13.23973 -13.14906 -13.08605 -12.51640 -12.30280 -12.23169 -12.11980 -11.98852 -11.78649 -11.63735 -11.49682 -11.27386 -11.15143 -10.89884 -10.81695 -10.64536 -10.55756 -10.44545 -10.16044 -9.93169 -9.63487 -9.56526 -9.48717 -9.14528 -8.43400 -8.33865 -7.70890 -7.63911 -6.04298 -4.09301 0.96469 1.13205 3.31399 3.34789 3.36535 3.41390 3.57469 3.96365 4.02617 4.07315 4.32471 4.44803 4.59248 4.62835 4.80976 4.84694 4.97257 5.03792 5.08363 5.14796 5.25252 5.27398 5.30467 5.33262 5.44195 5.52482 5.57352 5.61830 5.62211 5.64487 5.66793 5.76565 5.85938 5.89379 5.93184 5.94739 6.06458 6.09751 6.15145 6.25005 6.40119 6.50851 6.56498 6.92999 7.00308 7.03025 7.20113 7.25164 7.43688 7.53707 7.87262 7.91443 8.23079 8.40584 8.89198 9.07967 9.55836 11.03759 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.003127 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.084329 B = 8951.714476 C =10424.549101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.100 0.900 4 C 0.479 3.521 5 O -0.534 6.534 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.512 5.512 18 C 0.039 3.961 19 C 0.067 3.933 20 N -0.530 5.530 21 C 0.098 3.902 22 C -0.125 4.125 23 C -0.071 4.071 24 C -0.176 4.176 25 C 0.095 3.905 26 N -0.485 5.485 27 C 0.122 3.878 28 C 0.062 3.938 29 C 0.033 3.967 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.153 0.847 48 H 0.156 0.844 49 H 0.034 0.966 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 0.726 -21.254 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.118 0.882 4 C 0.264 3.736 5 O -0.412 6.412 6 N -0.331 5.331 7 C -0.063 4.063 8 C 0.126 3.874 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.236 5.236 18 C -0.089 4.089 19 C -0.061 4.061 20 N -0.255 5.255 21 C -0.030 4.030 22 C -0.127 4.127 23 C -0.098 4.098 24 C -0.196 4.196 25 C -0.063 4.063 26 N -0.193 5.193 27 C -0.036 4.036 28 C -0.066 4.066 29 C -0.095 4.095 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.170 0.830 48 H 0.173 0.827 49 H 0.052 0.948 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.644 -0.641 -20.674 21.725 hybrid contribution 0.510 0.867 -0.159 1.018 sum -6.134 0.225 -20.833 21.719 Atomic orbital electron populations 1.21799 0.92619 1.02888 1.02460 1.21928 0.96919 0.98981 0.87653 0.88227 1.21446 0.79117 0.87992 0.85056 1.90622 1.51279 1.15628 1.83718 1.48308 1.63391 1.09243 1.12206 1.21699 0.99887 0.82785 1.01935 1.19267 0.94205 0.93535 0.80419 1.21353 0.91605 1.35568 1.07921 0.92654 1.24930 0.98700 0.94961 0.95442 1.69920 1.35825 1.35953 1.11653 0.86571 0.85305 0.78107 0.77526 1.20275 1.21153 1.20131 1.62749 1.05589 1.21028 1.34258 1.22344 0.87723 1.00530 0.98281 1.22088 0.98458 0.88377 0.97144 1.62093 1.05588 1.20867 1.36914 1.20934 1.00373 0.89901 0.91777 1.20765 0.95986 0.96805 0.99192 1.21498 0.94938 0.96605 0.96741 1.22098 1.01499 0.93962 1.01992 1.22767 0.90250 0.99899 0.93346 1.67729 1.14556 1.20752 1.16308 1.22697 0.99443 0.87352 0.94084 1.22191 0.87589 0.99520 0.97295 1.22519 0.97923 0.90723 0.98343 0.91711 0.91201 0.91812 0.93678 0.90808 0.92313 0.95201 0.93990 0.92659 0.90655 0.90876 0.90346 0.94454 0.89547 0.93889 0.85234 0.84945 0.82975 0.82675 0.94783 0.90729 0.89653 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.57 37.16 0.32 -1.41 16 2 C 0.06 0.86 2.32 -68.87 -0.16 0.70 16 3 H 0.10 1.36 6.00 -51.93 -0.31 1.04 16 4 C 0.48 9.67 5.89 -10.99 -0.06 9.60 16 5 O -0.53 -13.02 11.88 5.55 0.07 -12.96 16 6 N -0.60 -12.56 2.86 -182.96 -0.52 -13.09 16 7 C 0.08 1.26 10.07 59.84 0.60 1.87 16 8 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 9 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 13 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.51 -7.58 4.79 -227.88 -1.09 -8.67 16 18 C 0.04 0.62 5.10 -3.76 -0.02 0.60 16 19 C 0.07 0.87 5.61 -3.76 -0.02 0.85 16 20 N -0.53 -6.96 4.70 -235.91 -1.11 -8.07 16 21 C 0.10 1.02 5.14 -4.98 -0.03 0.99 16 22 C -0.13 -1.37 4.90 -104.48 -0.51 -1.88 16 23 C -0.07 -0.68 8.10 -39.27 -0.32 -1.00 16 24 C -0.18 -1.58 10.11 -39.44 -0.40 -1.98 16 25 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 26 N -0.49 -6.37 10.36 -13.25 -0.14 -6.50 16 27 C 0.12 1.50 10.86 -17.55 -0.19 1.31 16 28 C 0.06 0.79 5.28 -3.77 -0.02 0.77 16 29 C 0.03 0.49 4.74 -3.77 -0.02 0.47 16 30 H 0.06 0.75 7.95 -51.93 -0.41 0.34 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.84 6.24 -51.93 -0.32 0.52 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.19 8.07 -51.92 -0.42 0.78 16 35 H 0.06 0.75 5.83 -51.93 -0.30 0.45 16 36 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 37 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.08 1.54 5.91 -51.93 -0.31 1.24 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.81 7.98 -51.93 -0.41 0.40 16 44 H 0.04 0.39 8.07 -51.93 -0.42 -0.03 16 45 H 0.13 0.99 8.02 -52.49 -0.42 0.57 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 48 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.92 5.96 -51.93 -0.31 0.61 16 51 H 0.09 1.64 5.60 -51.93 -0.29 1.35 16 52 H 0.07 0.99 5.99 -51.93 -0.31 0.68 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -34.33 402.82 -10.87 -45.20 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.39 Total: 2.59 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.47 Total: 4.52 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -2.12 Total: -62.42 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.33 -10.87 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125230322.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.085 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds