Wall clock time and date at job start Wed Apr 1 2020 03:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47203 * 2 1 4 4 C 1.50695 * 109.46968 * 120.00262 * 2 1 3 5 5 O 1.21285 * 120.00103 * 93.66684 * 4 2 1 6 6 N 1.34775 * 119.99857 * 273.66494 * 4 2 1 7 7 C 1.46496 * 120.00035 * 0.02562 * 6 4 2 8 8 C 1.46505 * 119.99586 * 180.02562 * 6 4 2 9 9 C 1.50693 * 109.47259 * 90.00416 * 8 6 4 10 10 H 1.08000 * 120.00213 * 359.97438 * 9 8 6 11 11 C 1.37879 * 119.99770 * 179.97438 * 9 8 6 12 12 N 1.31509 * 120.00082 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99671 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47267 * 59.99906 * 13 11 9 15 15 H 1.48502 * 109.46941 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47336 * 299.99663 * 13 11 9 17 17 N 1.46901 * 109.46565 * 240.00154 * 2 1 3 18 18 C 1.46961 * 110.99499 * 186.78363 * 17 2 1 19 19 C 1.53054 * 109.36297 * 183.18740 * 18 17 2 20 20 N 1.46958 * 109.36618 * 301.60023 * 19 18 17 21 21 C 1.46894 * 110.99996 * 183.18904 * 20 19 18 22 22 C 1.50700 * 109.47200 * 169.99651 * 21 20 19 23 23 C 1.38675 * 120.41613 * 89.99707 * 22 21 20 24 24 C 1.38631 * 118.42160 * 180.02562 * 23 22 21 25 25 C 1.38226 * 119.15665 * 359.97438 * 24 23 22 26 26 N 1.31848 * 120.76869 * 0.02562 * 25 24 23 27 27 C 1.31891 * 121.72470 * 359.97438 * 26 25 24 28 28 C 1.46952 * 110.87902 * 59.31709 * 20 19 18 29 29 C 1.46953 * 111.00477 * 310.57994 * 17 2 1 30 30 H 1.09000 * 109.47300 * 299.99974 * 1 2 3 31 31 H 1.09002 * 109.47235 * 59.99738 * 1 2 3 32 32 H 1.08999 * 109.47696 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47239 * 90.00123 * 7 6 4 34 34 H 1.09007 * 109.47054 * 209.99906 * 7 6 4 35 35 H 1.08995 * 109.47264 * 329.99494 * 7 6 4 36 36 H 1.09011 * 109.46565 * 210.00146 * 8 6 4 37 37 H 1.09000 * 109.47366 * 329.99130 * 8 6 4 38 38 H 0.97002 * 119.99611 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.49133 * 63.22483 * 18 17 2 40 40 H 1.08998 * 109.50560 * 303.16212 * 18 17 2 41 41 H 1.08995 * 109.48661 * 181.62831 * 19 18 17 42 42 H 1.09002 * 109.50708 * 61.57695 * 19 18 17 43 43 H 1.09003 * 109.47435 * 49.99560 * 21 20 19 44 44 H 1.09005 * 109.46881 * 289.99746 * 21 20 19 45 45 H 1.08000 * 120.78682 * 359.75541 * 23 22 21 46 46 H 1.07998 * 120.41976 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.61438 * 180.02562 * 25 24 23 48 48 H 1.07995 * 119.61481 * 179.97438 * 27 26 25 49 49 H 1.09004 * 109.48848 * 60.65124 * 28 20 19 50 50 H 1.09005 * 109.48969 * 180.71216 * 28 20 19 51 51 H 1.09005 * 109.49200 * 296.78254 * 29 17 2 52 52 H 1.09005 * 109.48876 * 56.82336 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2978 -1.8929 1.1820 6 7 2.1865 -0.0318 2.3846 7 6 1.8654 1.3963 2.4431 8 6 2.6754 -0.7225 3.5806 9 6 4.1796 -0.6437 3.6266 10 1 4.7177 -0.1309 2.8431 11 6 4.8688 -1.2263 4.6690 12 7 4.2135 -1.8503 5.6233 13 14 6.7334 -1.1293 4.7256 14 1 7.1540 0.2942 4.7687 15 1 7.2288 -1.8282 5.9387 16 1 7.2998 -1.7764 3.5150 17 7 2.0195 -0.6925 -1.1995 18 6 3.4796 -0.8541 -1.1552 19 6 3.9576 -1.5064 -2.4547 20 7 3.2916 -2.8057 -2.6214 21 6 3.7812 -3.4982 -3.8208 22 6 3.2672 -4.9147 -3.8280 23 6 2.0570 -5.2194 -4.4328 24 6 1.6233 -6.5360 -4.4147 25 6 2.4063 -7.4946 -3.7994 26 7 3.5520 -7.1685 -3.2342 27 6 3.9957 -5.9265 -3.2323 28 6 1.8317 -2.6441 -2.6656 29 6 1.3537 -1.9918 -1.3662 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.8191 1.5223 2.7211 34 1 2.4994 1.8811 3.1856 35 1 2.0389 1.8481 1.4665 36 1 2.2593 -0.2481 4.4695 37 1 2.3669 -1.7674 3.5484 38 1 4.6984 -2.2599 6.3568 39 1 3.7500 -1.4868 -0.3099 40 1 3.9506 0.1226 -1.0439 41 1 5.0367 -1.6536 -2.4120 42 1 3.7117 -0.8609 -3.2979 43 1 4.8712 -3.5072 -3.8157 44 1 3.4264 -2.9783 -4.7107 45 1 1.4643 -4.4485 -4.9028 46 1 0.6856 -6.8092 -4.8756 47 1 2.0757 -8.5226 -3.7813 48 1 4.9389 -5.6975 -2.7588 49 1 1.5613 -2.0114 -3.5110 50 1 1.3608 -3.6209 -2.7768 51 1 1.5999 -2.6376 -0.5232 52 1 0.2744 -1.8447 -1.4084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125230322.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:20 Heat of formation + Delta-G solvation = 6.353666 kcal Electronic energy + Delta-G solvation = -31621.089757 eV Core-core repulsion = 27620.237155 eV Total energy + Delta-G solvation = -4000.852602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.65544 -41.10915 -39.45707 -37.07696 -36.36202 -34.81450 -33.89488 -32.83224 -31.94933 -31.57124 -29.72825 -28.11952 -27.38434 -26.12369 -25.21018 -24.77961 -24.18431 -23.01124 -22.47148 -21.00273 -19.75613 -18.72971 -18.06434 -17.94780 -17.73393 -17.30460 -16.88632 -16.58556 -16.35406 -15.98010 -15.79897 -15.68796 -15.40138 -15.31023 -14.91019 -14.54678 -14.48530 -14.26022 -14.03292 -13.92194 -13.67287 -13.47848 -13.32860 -13.23665 -13.12439 -12.95353 -12.92214 -12.62572 -12.57006 -12.55037 -12.24704 -12.15235 -12.03644 -11.72747 -11.68571 -11.54743 -11.01332 -10.73081 -10.67441 -10.39566 -9.95735 -9.40793 -9.30493 -9.06737 -8.25168 -6.40402 0.16722 0.35613 1.32754 1.37570 1.44574 1.82341 2.29864 2.45800 2.72208 2.85549 3.04131 3.16234 3.54971 3.72477 3.78425 3.87822 3.91223 3.95759 4.09035 4.09856 4.12691 4.22735 4.33001 4.41198 4.47935 4.50959 4.53020 4.57704 4.64727 4.66955 4.76553 4.80605 4.82382 4.85686 4.88267 4.95808 4.98867 5.02745 5.07367 5.17667 5.18980 5.24024 5.27689 5.32616 5.54077 5.79121 5.82075 5.85081 5.93327 6.03547 6.13950 6.15648 6.66876 6.79522 7.05352 7.26125 7.50121 8.81485 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.003127 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.084329 B = 8951.714476 C =10424.549101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.124 0.876 4 C 0.470 3.530 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.279 1.279 17 N -0.494 5.494 18 C 0.041 3.959 19 C 0.074 3.926 20 N -0.558 5.558 21 C 0.104 3.896 22 C -0.131 4.131 23 C -0.072 4.072 24 C -0.168 4.168 25 C 0.079 3.921 26 N -0.521 5.521 27 C 0.094 3.906 28 C 0.070 3.930 29 C 0.034 3.966 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.020 0.980 37 H -0.009 1.009 38 H 0.267 0.733 39 H 0.019 0.981 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.156 0.844 46 H 0.166 0.834 47 H 0.174 0.826 48 H 0.148 0.852 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.034 0.966 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 2.945 -24.250 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.142 0.858 4 C 0.258 3.742 5 O -0.467 6.467 6 N -0.341 5.341 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.182 1.182 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.217 5.217 18 C -0.088 4.088 19 C -0.053 4.053 20 N -0.283 5.283 21 C -0.023 4.023 22 C -0.134 4.134 23 C -0.099 4.099 24 C -0.188 4.188 25 C -0.078 4.078 26 N -0.230 5.230 27 C -0.062 4.062 28 C -0.057 4.057 29 C -0.094 4.094 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.038 0.962 37 H 0.009 0.991 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.173 0.827 46 H 0.184 0.816 47 H 0.191 0.809 48 H 0.165 0.835 49 H 0.075 0.925 50 H 0.094 0.906 51 H 0.053 0.947 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.601 1.628 -23.691 24.934 hybrid contribution 0.728 0.111 0.783 1.075 sum -6.872 1.739 -22.908 23.980 Atomic orbital electron populations 1.21819 0.90045 1.02698 1.04593 1.22120 0.98817 0.99098 0.84593 0.85808 1.22578 0.77938 0.87612 0.86078 1.90622 1.53164 1.18258 1.84607 1.48356 1.63413 1.11438 1.10908 1.21988 1.01325 0.79397 1.03871 1.18673 0.93435 0.91320 0.82569 1.21630 0.92796 1.35602 1.07824 0.93039 1.25867 1.03922 0.94392 0.95001 1.70047 1.37855 1.36693 1.12299 0.85496 0.79001 0.79109 0.77406 1.18164 1.20307 1.20484 1.62882 1.04960 1.20699 1.33164 1.22297 0.88498 1.00087 0.97908 1.22006 0.98617 0.88595 0.96104 1.62009 1.05998 1.21276 1.39019 1.20933 1.00669 0.89342 0.91375 1.20854 0.96591 0.96659 0.99256 1.21846 0.94366 0.97574 0.96069 1.22469 1.02178 0.93391 1.00719 1.23249 0.89806 1.01532 0.93239 1.67670 1.16239 1.21351 1.17743 1.22744 1.00013 0.88024 0.95443 1.22104 0.87405 0.99765 0.96473 1.22481 0.99084 0.89967 0.97819 0.90671 0.87902 0.93203 0.90919 0.91720 0.88769 0.96199 0.99069 0.92431 0.96257 0.89948 0.89968 0.92159 0.89169 0.91627 0.82650 0.81610 0.80910 0.83498 0.92497 0.90575 0.94729 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.57 71.98 0.62 -2.31 16 2 C 0.07 1.87 2.32 44.17 0.10 1.97 16 3 H 0.12 2.93 6.00 -2.39 -0.01 2.91 16 4 C 0.47 19.51 5.89 87.66 0.52 20.03 16 5 O -0.59 -30.57 11.88 -3.05 -0.04 -30.61 16 6 N -0.61 -26.13 2.86 -851.14 -2.43 -28.56 16 7 C 0.08 2.26 10.07 127.77 1.29 3.54 16 8 C 0.26 14.52 5.16 85.63 0.44 14.96 16 9 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.42 5.46 84.66 0.46 0.88 16 12 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 13 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 N -0.49 -13.89 4.79 -874.87 -4.19 -18.08 16 18 C 0.04 1.27 5.10 86.31 0.44 1.71 16 19 C 0.07 1.82 5.61 86.31 0.48 2.31 16 20 N -0.56 -14.16 4.70 -900.29 -4.23 -18.40 16 21 C 0.10 2.00 5.14 85.56 0.44 2.44 16 22 C -0.13 -2.77 4.90 -19.77 -0.10 -2.87 16 23 C -0.07 -1.21 8.10 22.47 0.18 -1.03 16 24 C -0.17 -2.65 10.11 22.36 0.23 -2.42 16 25 C 0.08 1.60 11.18 84.69 0.95 2.54 16 26 N -0.52 -14.11 10.36 -195.85 -2.03 -16.14 16 27 C 0.09 2.44 10.86 84.67 0.92 3.36 16 28 C 0.07 1.66 5.28 86.31 0.46 2.11 16 29 C 0.03 1.01 4.74 86.31 0.41 1.42 16 30 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.24 6.24 -2.39 -0.01 1.22 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 35 H 0.09 2.10 5.83 -2.39 -0.01 2.09 16 36 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 37 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.02 0.83 5.91 -2.39 -0.01 0.82 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 44 H 0.07 0.97 8.07 -2.38 -0.02 0.95 16 45 H 0.16 1.76 8.02 -2.91 -0.02 1.73 16 46 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 48 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 49 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.08 1.75 5.96 -2.38 -0.01 1.74 16 51 H 0.03 1.40 5.60 -2.38 -0.01 1.39 16 52 H 0.09 2.32 5.99 -2.38 -0.01 2.31 16 Total: -1.00 -81.89 402.82 -1.63 -83.52 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.90 Total: 20.65 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 8.07 Total: 17.02 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -12.60 Total: -138.60 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.04 Total: -30.61 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.89 -1.63 -83.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125230322.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.873 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds