Wall clock time and date at job start Wed Apr 1 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46811 * 2 1 4 4 C 1.46957 * 110.99677 * 189.99907 * 3 2 1 5 5 C 1.53059 * 109.36135 * 183.18614 * 4 3 2 6 6 N 1.46955 * 109.36478 * 301.59645 * 5 4 3 7 7 C 1.39671 * 111.00088 * 183.19015 * 6 5 4 8 8 C 1.38980 * 120.03849 * 0.02562 * 7 6 5 9 9 C 1.38132 * 120.06676 * 180.02562 * 8 7 6 10 10 C 1.38193 * 120.13875 * 359.94972 * 9 8 7 11 11 C 1.38897 * 120.07724 * 0.02562 * 10 9 8 12 12 N 1.39948 * 120.02840 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99833 * 146.81037 * 12 11 10 14 14 O 1.21588 * 120.00214 * 354.67730 * 13 12 11 15 15 N 1.34777 * 119.99700 * 174.68519 * 13 12 11 16 16 C 1.46506 * 119.99980 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.46870 * 324.72208 * 16 15 13 18 18 C 1.52998 * 109.47058 * 84.72653 * 16 15 13 19 19 C 1.50694 * 109.47081 * 204.72397 * 16 15 13 20 20 H 1.07997 * 120.00433 * 0.02562 * 19 16 15 21 21 C 1.37880 * 120.00196 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99641 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00402 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46761 * 90.00343 * 23 21 19 25 25 H 1.48493 * 109.47146 * 210.00222 * 23 21 19 26 26 H 1.48501 * 109.46959 * 330.00498 * 23 21 19 27 27 C 1.38751 * 119.93969 * 0.29383 * 11 10 9 28 28 C 1.46953 * 110.87928 * 59.31892 * 6 5 4 29 29 C 1.46964 * 110.99734 * 313.79519 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00915 * 1 2 3 31 31 H 1.09006 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47493 * 300.00177 * 1 2 3 33 33 H 1.08991 * 109.47493 * 239.99823 * 2 1 3 34 34 H 1.09001 * 109.47074 * 119.99085 * 2 1 3 35 35 H 1.08997 * 109.48980 * 63.21801 * 4 3 2 36 36 H 1.09001 * 109.49109 * 303.15172 * 4 3 2 37 37 H 1.08995 * 109.48745 * 181.63099 * 5 4 3 38 38 H 1.08998 * 109.50350 * 61.57605 * 5 4 3 39 39 H 1.08003 * 119.96813 * 359.97430 * 8 7 6 40 40 H 1.07997 * 119.92923 * 179.97438 * 9 8 7 41 41 H 1.07994 * 119.95616 * 180.02562 * 10 9 8 42 42 H 0.97002 * 119.99785 * 326.79685 * 12 11 10 43 43 H 0.97000 * 120.00482 * 359.71776 * 15 13 12 44 44 H 1.09000 * 109.47041 * 180.02562 * 18 16 15 45 45 H 1.09008 * 109.46700 * 299.99484 * 18 16 15 46 46 H 1.08991 * 109.47438 * 59.99554 * 18 16 15 47 47 H 0.97007 * 120.00199 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.07287 * 179.72211 * 27 11 10 49 49 H 1.09002 * 109.49193 * 60.65156 * 28 6 5 50 50 H 1.09001 * 109.49048 * 180.71204 * 28 6 5 51 51 H 1.09003 * 109.48597 * 296.78115 * 29 3 2 52 52 H 1.08996 * 109.48867 * 56.82732 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2382 5 6 3.9516 2.8811 -0.1517 6 7 3.2319 3.6941 -1.1420 7 6 3.6974 5.0109 -1.1421 8 6 4.7147 5.3893 -0.2741 9 6 5.1752 6.6916 -0.2733 10 6 4.6270 7.6219 -1.1358 11 6 3.6104 7.2500 -2.0061 12 7 3.0563 8.1928 -2.8794 13 6 2.6221 7.8104 -4.0966 14 8 2.7991 6.6682 -4.4740 15 7 1.9918 8.6942 -4.8955 16 6 1.5203 8.2786 -6.2189 17 1 2.2216 7.5618 -6.6459 18 6 0.1419 7.6277 -6.0880 19 6 1.4234 9.4836 -7.1187 20 1 1.6870 10.4610 -6.7427 21 6 0.9991 9.3380 -8.4225 22 7 0.6785 8.1477 -8.8806 23 14 0.8781 10.8317 -9.5378 24 1 2.1704 11.0293 -10.2422 25 1 -0.2016 10.6189 -10.5348 26 1 0.5696 12.0342 -8.7229 27 6 3.1408 5.9444 -2.0049 28 6 1.7825 3.6478 -0.9039 29 6 1.2999 2.1980 -0.9904 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.6875 1.0337 -1.2293 36 1 3.9807 0.8321 0.5151 37 1 5.0213 2.9212 -0.3567 38 1 3.7580 3.2701 0.8479 39 1 5.1451 4.6645 0.4011 40 1 5.9655 6.9832 0.4024 41 1 4.9895 8.6391 -1.1329 42 1 2.9847 9.1215 -2.6085 43 1 1.8471 9.6043 -4.5928 44 1 -0.2087 7.3182 -7.0725 45 1 0.2121 6.7561 -5.4371 46 1 -0.5593 8.3445 -5.6609 47 1 0.3796 8.0452 -9.7978 48 1 2.3473 5.6540 -2.6776 49 1 1.5639 4.0454 0.0872 50 1 1.2709 4.2469 -1.6572 51 1 1.4938 1.8092 -1.9901 52 1 0.2301 2.1577 -0.7856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185713757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:11 Heat of formation + Delta-G solvation = 22.212891 kcal Electronic energy + Delta-G solvation = -30584.267211 eV Core-core repulsion = 26584.102316 eV Total energy + Delta-G solvation = -4000.164895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63195 -39.67805 -38.24203 -36.19879 -34.90550 -33.91024 -32.40703 -31.91766 -31.09126 -29.91683 -29.07846 -27.99303 -26.15430 -25.25947 -24.33703 -22.79461 -22.20525 -21.54578 -20.78337 -19.86928 -19.77189 -18.15843 -17.90918 -16.36568 -16.10306 -15.86427 -15.59483 -15.36664 -15.15950 -15.02255 -14.89015 -14.66749 -14.46656 -14.10081 -13.80294 -13.52747 -13.30395 -13.27508 -12.75130 -12.54437 -12.38455 -12.24733 -11.98789 -11.74960 -11.69931 -11.55876 -11.47054 -11.26515 -11.10776 -11.05656 -10.99718 -10.85071 -10.76597 -10.32450 -10.24072 -10.08253 -9.61242 -9.32591 -9.05813 -8.60441 -8.56148 -8.11597 -7.85044 -7.63222 -6.13122 -4.22248 1.47451 1.58535 3.18808 3.24407 3.31266 3.33561 3.52566 3.61426 3.75656 4.15387 4.32014 4.56099 4.66820 4.80448 4.84993 4.92877 5.00180 5.08823 5.14091 5.16380 5.19640 5.20172 5.21960 5.29427 5.33469 5.49093 5.51713 5.59815 5.65060 5.66585 5.68649 5.79266 5.83352 5.89051 5.96313 6.30446 6.47976 6.52655 6.55444 6.74447 6.75218 6.80718 6.96299 6.97942 7.12464 7.12863 7.25697 7.42751 7.46486 7.61828 7.83485 8.00199 8.14860 8.72847 8.85316 9.25178 9.46413 10.92975 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.002377 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.305141 B =11777.452508 C =13568.683700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.055 3.945 5 C 0.056 3.944 6 N -0.488 5.488 7 C 0.130 3.870 8 C -0.199 4.199 9 C -0.075 4.075 10 C -0.183 4.183 11 C 0.206 3.794 12 N -0.697 5.697 13 C 0.691 3.309 14 O -0.577 6.577 15 N -0.719 5.719 16 C 0.280 3.720 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.142 4.142 28 C 0.061 3.939 29 C 0.049 3.951 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.402 0.598 43 H 0.386 0.614 44 H 0.090 0.910 45 H 0.015 0.985 46 H 0.026 0.974 47 H 0.265 0.735 48 H 0.141 0.859 49 H 0.051 0.949 50 H 0.089 0.911 51 H 0.046 0.954 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -9.878 21.736 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.073 4.073 5 C -0.072 4.072 6 N -0.203 5.203 7 C 0.032 3.968 8 C -0.220 4.220 9 C -0.095 4.095 10 C -0.205 4.205 11 C 0.109 3.891 12 N -0.344 5.344 13 C 0.391 3.609 14 O -0.454 6.454 15 N -0.371 5.371 16 C 0.179 3.821 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.164 4.164 28 C -0.064 4.064 29 C -0.079 4.079 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.237 0.763 43 H 0.218 0.782 44 H 0.109 0.891 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.075 0.925 48 H 0.159 0.841 49 H 0.069 0.931 50 H 0.107 0.893 51 H 0.064 0.936 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.688 -11.078 21.064 24.083 hybrid contribution -0.024 1.653 -0.614 1.764 sum 3.664 -9.425 20.449 22.813 Atomic orbital electron populations 1.21944 0.94907 1.01986 1.02678 1.22073 0.95894 0.88908 1.00788 1.62290 1.03991 1.10915 1.49486 1.22195 0.88206 0.96317 1.00599 1.22314 0.98559 0.92421 0.93875 1.59169 1.05133 1.08375 1.47655 1.18671 0.95960 0.87841 0.94360 1.21124 1.02344 0.97050 1.01511 1.20653 0.98534 0.92537 0.97732 1.20758 0.98111 1.00572 1.01010 1.17324 0.92134 0.89475 0.90160 1.42906 1.65224 1.11120 1.15192 1.16188 0.79110 0.85835 0.79755 1.90915 1.62224 1.18382 1.73882 1.45877 1.59343 1.12594 1.19245 1.18674 0.92166 0.95589 0.75702 0.93301 1.22096 0.98789 0.97359 1.02350 1.21203 1.46293 0.93492 0.96236 0.92086 1.24884 0.94803 0.96244 0.97789 1.69906 1.44001 1.21745 1.16366 0.86431 0.77828 0.82441 0.80284 1.20559 1.21057 1.19873 1.20800 1.03542 0.91918 1.00183 1.22303 0.86026 0.96855 1.01265 1.22327 0.98873 0.92535 0.94140 0.92128 0.92142 0.91757 0.94769 0.90710 0.93707 0.90038 0.89544 0.92813 0.85988 0.86063 0.86115 0.76281 0.78203 0.89108 0.96623 0.95521 0.92544 0.84118 0.93096 0.89268 0.93574 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.18 37.16 0.34 -0.77 16 2 C 0.05 0.40 6.00 -3.82 -0.02 0.38 16 3 N -0.54 -5.20 4.86 -234.46 -1.14 -6.34 16 4 C 0.06 0.51 5.58 -3.76 -0.02 0.49 16 5 C 0.06 0.57 4.29 -3.76 -0.02 0.55 16 6 N -0.49 -6.39 4.75 -170.98 -0.81 -7.21 16 7 C 0.13 1.86 5.64 -83.82 -0.47 1.39 16 8 C -0.20 -2.42 8.81 -39.35 -0.35 -2.76 16 9 C -0.08 -0.86 10.03 -39.64 -0.40 -1.26 16 10 C -0.18 -2.33 9.96 -39.35 -0.39 -2.72 16 11 C 0.21 3.22 6.27 -83.72 -0.53 2.69 16 12 N -0.70 -10.95 5.35 -14.24 -0.08 -11.03 16 13 C 0.69 14.17 8.26 -86.92 -0.72 13.46 16 14 O -0.58 -14.18 13.71 5.29 0.07 -14.11 16 15 N -0.72 -14.98 5.07 -59.82 -0.30 -15.28 16 16 C 0.28 7.15 2.56 -69.08 -0.18 6.97 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 19 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.87 11.32 55.43 0.63 -24.25 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.14 -2.36 7.79 -39.20 -0.31 -2.66 16 28 C 0.06 0.74 5.37 -3.77 -0.02 0.72 16 29 C 0.05 0.52 4.93 -3.76 -0.02 0.50 16 30 H 0.06 0.45 6.26 -51.93 -0.33 0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.82 7.17 -51.93 -0.37 0.45 16 38 H 0.05 0.53 7.58 -51.93 -0.39 0.14 16 39 H 0.12 1.21 5.80 -52.48 -0.30 0.91 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.40 4.85 8.83 -40.82 -0.36 4.49 16 43 H 0.39 6.83 8.56 -40.82 -0.35 6.48 16 44 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 45 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.14 2.72 5.53 -52.49 -0.29 2.43 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 1.17 6.80 -51.93 -0.35 0.82 16 51 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.09 0.83 5.99 -51.93 -0.31 0.51 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -31.81 403.59 -12.09 -43.90 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.38 Total: 11.71 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -3.14 Total: 0.93 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.70 Total: -64.10 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.81 -12.09 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185713757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.117 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds