Wall clock time and date at job start Wed Apr 1 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46811 * 2 1 4 4 C 1.46957 * 110.99677 * 189.99907 * 3 2 1 5 5 C 1.53059 * 109.36135 * 183.18614 * 4 3 2 6 6 N 1.46955 * 109.36478 * 301.59645 * 5 4 3 7 7 C 1.39671 * 111.00088 * 183.19015 * 6 5 4 8 8 C 1.38980 * 120.03849 * 0.02562 * 7 6 5 9 9 C 1.38132 * 120.06676 * 180.02562 * 8 7 6 10 10 C 1.38193 * 120.13875 * 359.94972 * 9 8 7 11 11 C 1.38897 * 120.07724 * 0.02562 * 10 9 8 12 12 N 1.39948 * 120.02840 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99833 * 146.81037 * 12 11 10 14 14 O 1.21588 * 120.00214 * 354.67730 * 13 12 11 15 15 N 1.34777 * 119.99700 * 174.68519 * 13 12 11 16 16 C 1.46506 * 119.99980 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.46870 * 324.72208 * 16 15 13 18 18 C 1.52998 * 109.47058 * 84.72653 * 16 15 13 19 19 C 1.50694 * 109.47081 * 204.72397 * 16 15 13 20 20 H 1.07997 * 120.00433 * 0.02562 * 19 16 15 21 21 C 1.37880 * 120.00196 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99641 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00402 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46761 * 90.00343 * 23 21 19 25 25 H 1.48493 * 109.47146 * 210.00222 * 23 21 19 26 26 H 1.48501 * 109.46959 * 330.00498 * 23 21 19 27 27 C 1.38751 * 119.93969 * 0.29383 * 11 10 9 28 28 C 1.46953 * 110.87928 * 59.31892 * 6 5 4 29 29 C 1.46964 * 110.99734 * 313.79519 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00915 * 1 2 3 31 31 H 1.09006 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47493 * 300.00177 * 1 2 3 33 33 H 1.08991 * 109.47493 * 239.99823 * 2 1 3 34 34 H 1.09001 * 109.47074 * 119.99085 * 2 1 3 35 35 H 1.08997 * 109.48980 * 63.21801 * 4 3 2 36 36 H 1.09001 * 109.49109 * 303.15172 * 4 3 2 37 37 H 1.08995 * 109.48745 * 181.63099 * 5 4 3 38 38 H 1.08998 * 109.50350 * 61.57605 * 5 4 3 39 39 H 1.08003 * 119.96813 * 359.97430 * 8 7 6 40 40 H 1.07997 * 119.92923 * 179.97438 * 9 8 7 41 41 H 1.07994 * 119.95616 * 180.02562 * 10 9 8 42 42 H 0.97002 * 119.99785 * 326.79685 * 12 11 10 43 43 H 0.97000 * 120.00482 * 359.71776 * 15 13 12 44 44 H 1.09000 * 109.47041 * 180.02562 * 18 16 15 45 45 H 1.09008 * 109.46700 * 299.99484 * 18 16 15 46 46 H 1.08991 * 109.47438 * 59.99554 * 18 16 15 47 47 H 0.97007 * 120.00199 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.07287 * 179.72211 * 27 11 10 49 49 H 1.09002 * 109.49193 * 60.65156 * 28 6 5 50 50 H 1.09001 * 109.49048 * 180.71204 * 28 6 5 51 51 H 1.09003 * 109.48597 * 296.78115 * 29 3 2 52 52 H 1.08996 * 109.48867 * 56.82732 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2382 5 6 3.9516 2.8811 -0.1517 6 7 3.2319 3.6941 -1.1420 7 6 3.6974 5.0109 -1.1421 8 6 4.7147 5.3893 -0.2741 9 6 5.1752 6.6916 -0.2733 10 6 4.6270 7.6219 -1.1358 11 6 3.6104 7.2500 -2.0061 12 7 3.0563 8.1928 -2.8794 13 6 2.6221 7.8104 -4.0966 14 8 2.7991 6.6682 -4.4740 15 7 1.9918 8.6942 -4.8955 16 6 1.5203 8.2786 -6.2189 17 1 2.2216 7.5618 -6.6459 18 6 0.1419 7.6277 -6.0880 19 6 1.4234 9.4836 -7.1187 20 1 1.6870 10.4610 -6.7427 21 6 0.9991 9.3380 -8.4225 22 7 0.6785 8.1477 -8.8806 23 14 0.8781 10.8317 -9.5378 24 1 2.1704 11.0293 -10.2422 25 1 -0.2016 10.6189 -10.5348 26 1 0.5696 12.0342 -8.7229 27 6 3.1408 5.9444 -2.0049 28 6 1.7825 3.6478 -0.9039 29 6 1.2999 2.1980 -0.9904 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.6875 1.0337 -1.2293 36 1 3.9807 0.8321 0.5151 37 1 5.0213 2.9212 -0.3567 38 1 3.7580 3.2701 0.8479 39 1 5.1451 4.6645 0.4011 40 1 5.9655 6.9832 0.4024 41 1 4.9895 8.6391 -1.1329 42 1 2.9847 9.1215 -2.6085 43 1 1.8471 9.6043 -4.5928 44 1 -0.2087 7.3182 -7.0725 45 1 0.2121 6.7561 -5.4371 46 1 -0.5593 8.3445 -5.6609 47 1 0.3796 8.0452 -9.7978 48 1 2.3473 5.6540 -2.6776 49 1 1.5639 4.0454 0.0872 50 1 1.2709 4.2469 -1.6572 51 1 1.4938 1.8092 -1.9901 52 1 0.2301 2.1577 -0.7856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185713757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:10 Heat of formation + Delta-G solvation = -0.443410 kcal Electronic energy + Delta-G solvation = -30585.249661 eV Core-core repulsion = 26584.102316 eV Total energy + Delta-G solvation = -4001.147346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.79011 -40.96043 -39.33524 -37.34777 -36.60593 -35.29193 -34.31234 -32.72947 -32.01231 -31.29718 -30.34569 -29.31264 -27.35090 -27.00095 -25.31688 -24.03737 -23.18447 -22.75608 -21.99617 -21.47812 -20.77666 -19.79414 -19.04159 -17.98763 -17.34939 -17.02924 -16.74816 -16.70745 -16.26108 -16.08521 -16.01685 -15.73941 -15.56705 -15.54418 -15.16153 -14.81894 -14.51361 -14.38854 -14.17083 -13.76203 -13.62986 -13.47330 -12.99014 -12.96467 -12.90594 -12.80423 -12.75811 -12.56225 -12.50167 -12.34744 -12.28002 -12.12816 -12.04634 -11.88965 -11.65324 -11.41812 -11.12765 -11.03146 -10.62175 -10.53875 -9.85600 -9.39618 -9.11316 -8.70687 -8.18395 -6.35937 0.40072 0.51352 1.44823 1.45831 1.56386 1.77863 2.17725 2.41586 2.62138 2.84858 3.00797 3.12415 3.45689 3.73646 3.90171 3.95893 4.09557 4.18378 4.21609 4.25135 4.32730 4.36140 4.42077 4.46013 4.57666 4.60817 4.63572 4.68895 4.73293 4.76948 4.79222 4.85183 4.90851 4.94042 5.01098 5.07722 5.10922 5.26371 5.28680 5.35220 5.45011 5.46225 5.55014 5.58360 5.66112 5.84351 5.85770 5.93781 6.05204 6.07308 6.10191 6.28042 6.38189 6.71897 7.23108 7.33125 7.67763 8.88342 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.002377 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.305141 B =11777.452508 C =13568.683700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 N -0.543 5.543 4 C 0.056 3.944 5 C 0.056 3.944 6 N -0.508 5.508 7 C 0.120 3.880 8 C -0.192 4.192 9 C -0.066 4.066 10 C -0.176 4.176 11 C 0.178 3.822 12 N -0.677 5.677 13 C 0.691 3.309 14 O -0.624 6.624 15 N -0.714 5.714 16 C 0.290 3.710 17 H -0.004 1.004 18 C -0.133 4.133 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.258 1.258 27 C -0.170 4.170 28 C 0.067 3.933 29 C 0.056 3.944 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.422 0.578 43 H 0.404 0.596 44 H 0.068 0.932 45 H 0.008 0.992 46 H 0.041 0.959 47 H 0.266 0.734 48 H 0.099 0.901 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.026 0.974 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -8.619 24.433 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.072 4.072 5 C -0.070 4.070 6 N -0.223 5.223 7 C 0.021 3.979 8 C -0.214 4.214 9 C -0.085 4.085 10 C -0.197 4.197 11 C 0.082 3.918 12 N -0.326 5.326 13 C 0.391 3.609 14 O -0.504 6.504 15 N -0.367 5.367 16 C 0.186 3.814 17 H 0.014 0.986 18 C -0.192 4.192 19 C -0.584 4.584 20 H 0.094 0.906 21 C -0.187 4.187 22 N -0.556 5.556 23 Si 0.800 3.200 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.182 1.182 27 C -0.194 4.194 28 C -0.059 4.059 29 C -0.072 4.072 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.260 0.740 43 H 0.239 0.761 44 H 0.086 0.914 45 H 0.027 0.973 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.044 0.956 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.152 -9.783 23.839 26.279 hybrid contribution -0.415 1.152 -1.353 1.824 sum 4.737 -8.632 22.487 24.548 Atomic orbital electron populations 1.21921 0.94358 1.02779 1.02190 1.22162 0.96411 0.87876 1.01297 1.62345 1.04157 1.11787 1.48535 1.22252 0.88228 0.96066 1.00669 1.22420 0.98762 0.92388 0.93457 1.59147 1.05653 1.08403 1.49146 1.18841 0.96640 0.87909 0.94462 1.21490 1.00997 0.98202 1.00700 1.21155 0.98464 0.91691 0.97192 1.21077 0.96584 1.02288 0.99769 1.17611 0.93826 0.89052 0.91321 1.42520 1.64315 1.12289 1.13444 1.16286 0.78806 0.84923 0.80843 1.90891 1.63815 1.20437 1.75246 1.45452 1.59662 1.13568 1.17996 1.18237 0.90958 0.94581 0.77641 0.98573 1.21909 0.98967 0.97393 1.00896 1.21524 1.46169 0.94018 0.96681 0.90646 1.25829 0.94291 0.99172 0.99400 1.70064 1.44741 1.24071 1.16763 0.85297 0.77612 0.79020 0.78107 1.20411 1.20945 1.18230 1.20643 1.03983 0.93578 1.01154 1.22191 0.85796 0.97496 1.00418 1.22234 0.99680 0.91754 0.93544 0.93060 0.90754 0.91737 0.95205 0.89119 0.95196 0.87427 0.88555 0.91874 0.83210 0.81970 0.83310 0.73999 0.76107 0.91373 0.97274 0.93997 0.92516 0.88254 0.92748 0.91804 0.95564 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.18 71.98 0.66 -1.40 16 2 C 0.05 0.73 6.00 86.30 0.52 1.25 16 3 N -0.54 -10.03 4.86 -895.69 -4.35 -14.38 16 4 C 0.06 0.97 5.58 86.31 0.48 1.46 16 5 C 0.06 1.07 4.29 86.31 0.37 1.45 16 6 N -0.51 -13.66 4.75 -694.87 -3.30 -16.96 16 7 C 0.12 3.46 5.64 38.20 0.22 3.67 16 8 C -0.19 -4.20 8.81 22.42 0.20 -4.00 16 9 C -0.07 -1.27 10.03 22.23 0.22 -1.05 16 10 C -0.18 -4.02 9.96 22.42 0.22 -3.80 16 11 C 0.18 5.55 6.27 38.13 0.24 5.79 16 12 N -0.68 -21.41 5.35 -317.24 -1.70 -23.11 16 13 C 0.69 29.57 8.26 179.06 1.48 31.04 16 14 O -0.62 -32.89 13.71 -3.99 -0.05 -32.95 16 15 N -0.71 -30.50 5.07 -461.42 -2.34 -32.84 16 16 C 0.29 15.38 2.56 44.24 0.11 15.50 16 17 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 18 C -0.13 -6.91 9.26 71.98 0.67 -6.25 16 19 C -0.55 -29.07 8.73 25.60 0.22 -28.85 16 20 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 21 C 0.01 0.71 5.30 84.66 0.45 1.16 16 22 N -0.92 -53.29 11.32 21.45 0.24 -53.04 16 23 Si 0.98 42.13 29.54 68.60 2.03 44.15 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C -0.17 -6.00 7.79 22.52 0.18 -5.82 16 28 C 0.07 1.72 5.37 86.31 0.46 2.18 16 29 C 0.06 1.24 4.93 86.31 0.43 1.66 16 30 H 0.05 0.77 6.26 -2.39 -0.01 0.76 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.03 0.47 8.08 -2.39 -0.02 0.45 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.63 7.17 -2.39 -0.02 1.61 16 38 H 0.06 1.10 7.58 -2.39 -0.02 1.08 16 39 H 0.15 2.40 5.80 -2.91 -0.02 2.39 16 40 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.42 9.68 8.83 -92.71 -0.82 8.86 16 43 H 0.40 14.14 8.56 -92.71 -0.79 13.34 16 44 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 45 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 48 H 0.10 4.29 5.53 -2.91 -0.02 4.28 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.06 1.92 6.80 -2.39 -0.02 1.91 16 51 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.10 1.94 5.99 -2.39 -0.01 1.93 16 Total: -1.00 -73.56 403.59 -3.03 -76.58 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.67 Total: 38.56 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.12 Total: 13.99 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -11.45 Total: -140.34 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.56 -3.03 -76.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185713757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.141 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds