Wall clock time and date at job start Wed Apr 1 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47492 * 2 1 4 4 C 1.48538 * 111.00123 * 287.39971 * 3 2 1 5 5 C 1.54933 * 103.22579 * 200.28130 * 4 3 2 6 6 C 1.54593 * 102.92591 * 37.41127 * 5 4 3 7 7 C 1.47899 * 111.00068 * 170.00129 * 3 2 1 8 8 H 1.09004 * 109.91646 * 26.49394 * 7 3 2 9 9 C 1.52997 * 110.08395 * 265.28924 * 7 3 2 10 10 N 1.46500 * 109.46813 * 55.85535 * 9 7 3 11 11 C 1.46506 * 119.99611 * 90.00522 * 10 9 7 12 12 C 1.50697 * 109.47142 * 89.99970 * 11 10 9 13 13 C 1.38654 * 120.78871 * 269.71468 * 12 11 10 14 14 C 1.38204 * 119.15931 * 179.75596 * 13 12 11 15 15 N 1.31869 * 120.76655 * 0.53510 * 14 13 12 16 16 C 1.31868 * 121.72498 * 359.73777 * 15 14 13 17 17 C 1.38201 * 120.76249 * 359.97438 * 16 15 14 18 18 C 1.34775 * 120.00264 * 269.99704 * 10 9 7 19 19 O 1.21585 * 119.99700 * 0.02562 * 18 10 9 20 20 N 1.34774 * 120.00142 * 180.02562 * 18 10 9 21 21 C 1.46504 * 119.99988 * 180.02562 * 20 18 10 22 22 C 1.50707 * 109.46729 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00382 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99458 * 179.97438 * 22 21 20 25 25 N 1.31521 * 120.00271 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99862 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47031 * 60.00231 * 26 24 22 28 28 H 1.48496 * 109.47047 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47347 * 300.00085 * 26 24 22 30 30 H 1.09008 * 109.46983 * 300.00250 * 1 2 3 31 31 H 1.09000 * 109.47121 * 59.99668 * 1 2 3 32 32 H 1.09002 * 109.47492 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46983 * 239.99750 * 2 1 3 34 34 H 1.09000 * 109.47121 * 120.00331 * 2 1 3 35 35 H 1.09007 * 110.66246 * 318.71191 * 4 3 2 36 36 H 1.08993 * 110.66671 * 81.67342 * 4 3 2 37 37 H 1.09007 * 110.72333 * 279.05054 * 5 4 3 38 38 H 1.09004 * 110.72411 * 155.77248 * 5 4 3 39 39 H 1.09004 * 110.30922 * 219.12663 * 6 5 4 40 40 H 1.08998 * 110.30989 * 96.95784 * 6 5 4 41 41 H 1.08995 * 109.47535 * 175.85650 * 9 7 3 42 42 H 1.09002 * 109.46941 * 295.86062 * 9 7 3 43 43 H 1.09009 * 109.46467 * 209.99413 * 11 10 9 44 44 H 1.08994 * 109.47050 * 329.99868 * 11 10 9 45 45 H 1.07997 * 120.41423 * 0.02562 * 13 12 11 46 46 H 1.08002 * 119.61292 * 180.29462 * 14 13 12 47 47 H 1.07996 * 119.61430 * 179.97438 * 16 15 14 48 48 H 1.08002 * 120.41465 * 179.97438 * 17 16 15 49 49 H 0.97002 * 119.99847 * 0.02562 * 20 18 10 50 50 H 1.08995 * 109.46827 * 299.99933 * 21 20 18 51 51 H 1.08999 * 109.47367 * 59.99904 * 21 20 18 52 52 H 0.96998 * 120.00081 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8062 2.0251 -1.3233 5 6 2.8089 3.2061 -1.3116 6 6 4.0331 2.6132 -0.5769 7 6 3.4784 1.4313 0.2397 8 1 3.9392 0.5013 -0.0932 9 6 3.7596 1.6484 1.7279 10 7 3.0964 0.6007 2.5081 11 6 3.8028 -0.6474 2.8077 12 6 4.5492 -0.5022 4.1088 13 6 5.8568 -0.0415 4.1293 14 6 6.5078 0.0835 5.3419 15 7 5.9033 -0.2394 6.4685 16 6 4.6626 -0.6859 6.4865 17 6 3.9468 -0.8315 5.3133 18 6 1.8367 0.7850 2.9502 19 8 1.2505 1.8206 2.7012 20 7 1.2268 -0.1787 3.6684 21 6 -0.1428 0.0214 4.1485 22 6 -0.5881 -1.1955 4.9180 23 1 0.0819 -2.0342 5.0371 24 6 -1.8508 -1.2380 5.4699 25 7 -2.6669 -0.2169 5.3245 26 14 -2.4032 -2.7466 6.4231 27 1 -1.4981 -2.9592 7.5812 28 1 -3.7909 -2.5432 6.9110 29 1 -2.3593 -3.9364 5.5357 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0404 1.3296 -2.1293 36 1 0.7823 2.3871 -1.4147 37 1 2.4008 4.0531 -0.7598 38 1 3.0731 3.4979 -2.3280 39 1 4.4734 3.3578 0.0864 40 1 4.7725 2.2619 -1.2965 41 1 4.8344 1.6075 1.9043 42 1 3.3784 2.6235 2.0312 43 1 3.0826 -1.4614 2.8909 44 1 4.5084 -0.8669 2.0066 45 1 6.3587 0.2205 3.2096 46 1 7.5249 0.4462 5.3668 47 1 4.2007 -0.9407 7.4288 48 1 2.9311 -1.1981 5.3345 49 1 1.6947 -1.0048 3.8673 50 1 -0.1756 0.8953 4.7991 51 1 -0.8069 0.1763 3.2982 52 1 -3.5554 -0.2470 5.7125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426448908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:05 Heat of formation + Delta-G solvation = 22.753385 kcal Electronic energy + Delta-G solvation = -32497.322400 eV Core-core repulsion = 28497.180943 eV Total energy + Delta-G solvation = -4000.141457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.50286 -39.64163 -38.42525 -35.54749 -34.20893 -33.31474 -32.61417 -32.20036 -31.16267 -30.02572 -28.51841 -27.20157 -26.82398 -24.86969 -23.45470 -22.63635 -22.25642 -22.00707 -20.71571 -20.18329 -19.11220 -18.08592 -16.79109 -16.34001 -16.04898 -15.97730 -15.75781 -15.55968 -15.31542 -14.84639 -14.54690 -14.07211 -13.94656 -13.77911 -13.68206 -13.35887 -13.07158 -13.00061 -12.87707 -12.69023 -12.40523 -12.30370 -11.91302 -11.84749 -11.57966 -11.42303 -11.23382 -11.18289 -11.05275 -10.94763 -10.93726 -10.85255 -10.62220 -10.45655 -10.25098 -9.73031 -9.53357 -9.33481 -9.12423 -9.08538 -8.67114 -8.48781 -7.95150 -7.64103 -6.12455 -4.18910 1.15399 1.20304 3.24026 3.26200 3.32155 3.33632 3.87777 4.03800 4.11086 4.33379 4.46979 4.54927 4.63085 4.67873 4.73015 4.84893 4.92875 5.03538 5.14371 5.17786 5.23624 5.27574 5.33111 5.36374 5.46028 5.51775 5.54078 5.56934 5.68792 5.71577 5.78275 5.80210 5.85710 5.91494 5.96562 6.00203 6.13892 6.18448 6.23820 6.28962 6.34425 6.70395 6.78315 6.81208 7.15755 7.21712 7.34148 7.56240 7.63167 7.65042 7.93006 7.98044 8.06978 8.80474 8.99911 9.41979 9.59844 10.97450 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007443 B = 0.004797 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.996920 B = 5835.154522 C = 8958.790193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.484 5.484 4 C 0.036 3.964 5 C -0.121 4.121 6 C -0.123 4.123 7 C 0.050 3.950 8 H 0.045 0.955 9 C 0.153 3.847 10 N -0.630 5.630 11 C 0.149 3.851 12 C -0.061 4.061 13 C -0.162 4.162 14 C 0.091 3.909 15 N -0.488 5.488 16 C 0.101 3.899 17 C -0.151 4.151 18 C 0.701 3.299 19 O -0.564 6.564 20 N -0.736 5.736 21 C 0.272 3.728 22 C -0.540 4.540 23 H 0.058 0.942 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.141 0.859 49 H 0.379 0.621 50 H 0.021 0.979 51 H 0.024 0.976 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.566 0.096 -10.838 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 N -0.208 5.208 4 C -0.092 4.092 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.061 4.061 8 H 0.063 0.937 9 C 0.028 3.972 10 N -0.368 5.368 11 C 0.024 3.976 12 C -0.070 4.070 13 C -0.182 4.182 14 C -0.066 4.066 15 N -0.197 5.197 16 C -0.056 4.056 17 C -0.171 4.171 18 C 0.402 3.598 19 O -0.439 6.439 20 N -0.391 5.391 21 C 0.151 3.849 22 C -0.579 4.579 23 H 0.077 0.923 24 C -0.138 4.138 25 N -0.521 5.521 26 Si 0.726 3.274 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.148 0.852 46 H 0.169 0.831 47 H 0.174 0.826 48 H 0.159 0.841 49 H 0.212 0.788 50 H 0.039 0.961 51 H 0.042 0.958 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.995 1.306 -9.755 19.639 hybrid contribution -0.183 -1.887 -0.777 2.049 sum 16.812 -0.581 -10.532 19.847 Atomic orbital electron populations 1.21698 0.94370 1.01197 1.02837 1.22245 0.96903 0.88834 0.99718 1.64676 1.12010 1.16722 1.27370 1.23227 1.00175 0.95470 0.90325 1.22436 0.95204 0.98424 0.99813 1.22363 0.97747 0.97416 0.98603 1.22804 0.89599 0.97187 0.96484 0.93721 1.21268 0.95120 0.92445 0.88334 1.47172 1.14120 1.17516 1.58035 1.20337 0.96027 0.88342 0.92848 1.20815 0.94194 0.95665 0.96373 1.21960 0.95166 1.01432 0.99658 1.22684 0.99779 0.96274 0.87837 1.67665 1.10837 1.10685 1.30541 1.22792 0.89909 0.94462 0.98393 1.22276 1.01608 1.00283 0.92931 1.15926 0.80219 0.84606 0.79060 1.90901 1.63859 1.27368 1.61798 1.45932 1.18548 1.17930 1.56651 1.18885 0.75205 0.96679 0.94158 1.21157 0.99748 1.01902 1.35091 0.92347 1.24902 0.96316 0.96414 0.96127 1.69967 1.07886 1.30017 1.44221 0.86555 0.77869 0.82762 0.80172 1.20113 1.21137 1.20176 0.90474 0.93726 0.92897 0.96292 0.90647 0.94679 0.90234 0.90566 0.91582 0.90844 0.91788 0.91486 0.89334 0.89592 0.89674 0.85201 0.83135 0.82601 0.84111 0.78753 0.96105 0.95822 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.00 37.16 0.37 -1.99 16 2 C 0.05 0.76 4.58 -3.83 -0.02 0.74 16 3 N -0.48 -7.02 3.59 -222.57 -0.80 -7.82 16 4 C 0.04 0.44 5.91 -1.90 -0.01 0.43 16 5 C -0.12 -1.25 7.06 -24.87 -0.18 -1.42 16 6 C -0.12 -1.17 6.57 -25.37 -0.17 -1.34 16 7 C 0.05 0.58 2.84 -66.64 -0.19 0.40 16 8 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 9 C 0.15 1.95 4.97 -4.04 -0.02 1.93 16 10 N -0.63 -9.13 1.41 -180.80 -0.25 -9.39 16 11 C 0.15 1.71 4.97 -5.19 -0.03 1.68 16 12 C -0.06 -0.73 5.50 -104.32 -0.57 -1.30 16 13 C -0.16 -1.68 9.82 -39.44 -0.39 -2.07 16 14 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 15 N -0.49 -6.65 10.36 -13.25 -0.14 -6.79 16 16 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 17 C -0.15 -2.03 9.65 -39.44 -0.38 -2.41 16 18 C 0.70 13.70 5.96 -86.92 -0.52 13.18 16 19 O -0.56 -13.41 15.09 5.29 0.08 -13.33 16 20 N -0.74 -15.03 5.35 -66.41 -0.36 -15.38 16 21 C 0.27 7.03 5.43 -5.19 -0.03 7.00 16 22 C -0.54 -14.22 9.28 -34.44 -0.32 -14.53 16 23 H 0.06 1.43 7.60 -52.49 -0.40 1.03 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 25 N -0.88 -25.72 13.29 55.43 0.74 -24.99 16 26 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.04 0.66 7.37 -51.93 -0.38 0.28 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.25 7.83 -51.92 -0.41 -0.15 16 34 H 0.08 1.18 5.31 -51.93 -0.28 0.91 16 35 H 0.03 0.40 7.81 -51.93 -0.41 0.00 16 36 H 0.08 1.05 7.80 -51.93 -0.40 0.64 16 37 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.09 1.38 7.42 -51.93 -0.39 1.00 16 43 H 0.09 1.01 6.33 -51.92 -0.33 0.68 16 44 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 48 H 0.14 2.01 6.38 -52.49 -0.33 1.68 16 49 H 0.38 6.80 4.24 -40.82 -0.17 6.62 16 50 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -32.61 409.43 -11.01 -43.62 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.50 Total: 8.37 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.93 Total: 3.99 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.81 Total: -64.36 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.61 -11.01 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.368 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds