Wall clock time and date at job start Wed Apr 1 2020 04:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.46935 * 2 1 4 4 C 1.47442 * 110.99865 * 54.56915 * 3 2 1 5 5 C 1.54360 * 107.25008 * 123.29092 * 4 3 2 6 6 C 1.55141 * 102.99848 * 22.23138 * 5 4 3 7 7 C 1.47846 * 111.00048 * 175.41031 * 3 2 1 8 8 H 1.09000 * 110.37594 * 332.46744 * 7 3 2 9 9 C 1.53000 * 110.46756 * 94.75923 * 7 3 2 10 10 N 1.46504 * 109.47135 * 301.88446 * 9 7 3 11 11 C 1.46497 * 119.99950 * 90.00007 * 10 9 7 12 12 C 1.50699 * 109.47175 * 90.00129 * 11 10 9 13 13 C 1.38653 * 120.78826 * 269.71373 * 12 11 10 14 14 C 1.38204 * 119.16221 * 179.75506 * 13 12 11 15 15 N 1.31872 * 120.76311 * 0.53715 * 14 13 12 16 16 C 1.31875 * 121.72620 * 359.73563 * 15 14 13 17 17 C 1.38204 * 120.75974 * 359.97438 * 16 15 14 18 18 C 1.34771 * 119.99614 * 269.99604 * 10 9 7 19 19 O 1.21589 * 120.00143 * 0.02562 * 18 10 9 20 20 N 1.34779 * 119.99817 * 179.97438 * 18 10 9 21 21 C 1.46502 * 119.99947 * 180.02562 * 20 18 10 22 22 C 1.50697 * 109.47113 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00096 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00130 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00167 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00017 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47286 * 89.99797 * 26 24 22 28 28 H 1.48506 * 109.47176 * 209.99609 * 26 24 22 29 29 H 1.48501 * 109.47332 * 329.99781 * 26 24 22 30 30 H 1.09005 * 109.46510 * 176.95662 * 1 2 3 31 31 H 1.08997 * 109.47550 * 296.95134 * 1 2 3 32 32 H 1.08996 * 109.47492 * 56.95924 * 1 2 3 33 33 H 1.08998 * 109.47465 * 240.00215 * 2 1 3 34 34 H 1.09002 * 109.47457 * 119.99936 * 2 1 3 35 35 H 1.09004 * 109.88650 * 242.66731 * 4 3 2 36 36 H 1.09004 * 109.89048 * 3.68962 * 4 3 2 37 37 H 1.09000 * 110.69531 * 263.86405 * 5 4 3 38 38 H 1.09005 * 110.74231 * 140.61408 * 5 4 3 39 39 H 1.09003 * 110.98928 * 206.28391 * 6 5 4 40 40 H 1.08998 * 110.99024 * 82.50483 * 6 5 4 41 41 H 1.09007 * 109.46753 * 61.87936 * 9 7 3 42 42 H 1.08997 * 109.47309 * 181.88159 * 9 7 3 43 43 H 1.09008 * 109.46911 * 210.00012 * 11 10 9 44 44 H 1.09001 * 109.47495 * 329.99767 * 11 10 9 45 45 H 1.07998 * 120.41556 * 0.02562 * 13 12 11 46 46 H 1.07996 * 119.61662 * 180.29324 * 14 13 12 47 47 H 1.07995 * 119.61670 * 179.97438 * 16 15 14 48 48 H 1.08010 * 120.41168 * 180.02562 * 17 16 15 49 49 H 0.97002 * 120.00352 * 0.02562 * 20 18 10 50 50 H 1.09003 * 109.47388 * 300.00436 * 21 20 18 51 51 H 1.08999 * 109.47383 * 60.00337 * 21 20 18 52 52 H 0.97002 * 120.00587 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4433 2.1492 1.1216 5 6 2.6213 2.7079 1.9479 6 6 3.7931 2.7052 0.9311 7 6 3.4934 1.4260 0.1104 8 1 3.8593 0.5437 0.6356 9 6 4.1314 1.5216 -1.2769 10 7 3.7096 0.3770 -2.0883 11 6 2.4989 0.4668 -2.9082 12 6 2.8568 0.9842 -4.2776 13 6 2.8472 2.3442 -4.5473 14 6 3.1861 2.7820 -5.8136 15 7 3.5053 1.9226 -6.7615 16 6 3.5197 0.6222 -6.5424 17 6 3.1979 0.1112 -5.2993 18 6 4.4356 -0.7585 -2.0804 19 8 5.4402 -0.8331 -1.3996 20 7 4.0473 -1.8117 -2.8264 21 6 4.8361 -3.0462 -2.8175 22 6 4.1926 -4.0600 -3.7280 23 1 3.2865 -3.8100 -4.2598 24 6 4.7601 -5.3072 -3.8814 25 7 5.8632 -5.6119 -3.2334 26 14 3.9621 -6.5641 -5.0095 27 1 4.5127 -6.4186 -6.3809 28 1 4.2449 -7.9320 -4.5052 29 1 2.4942 -6.3412 -5.0392 30 1 -0.3632 -1.0263 -0.0546 31 1 -0.3634 0.4657 0.9160 32 1 -0.3634 0.5603 -0.8614 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8375 2.9703 0.7383 36 1 0.8304 1.4939 1.7406 37 1 2.8427 2.0559 2.7928 38 1 2.4082 3.7216 2.2875 39 1 4.7529 2.6255 1.4417 40 1 3.7625 3.5917 0.2977 41 1 3.8140 2.4459 -1.7598 42 1 5.2169 1.5171 -1.1787 43 1 2.0478 -0.5214 -2.9995 44 1 1.7902 1.1474 -2.4364 45 1 2.5826 3.0526 -3.7763 46 1 3.1858 3.8400 -6.0304 47 1 3.7859 -0.0511 -7.3437 48 1 3.2118 -0.9548 -5.1260 49 1 3.2456 -1.7523 -3.3693 50 1 5.8466 -2.8342 -3.1668 51 1 4.8781 -3.4432 -1.8033 52 1 6.2623 -6.4894 -3.3410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426448910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:08 Heat of formation + Delta-G solvation = -1.161314 kcal Electronic energy + Delta-G solvation = -32183.573950 eV Core-core repulsion = 28182.395473 eV Total energy + Delta-G solvation = -4001.178476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74439 -40.71640 -39.94874 -36.90589 -36.25904 -34.58974 -34.23858 -33.62996 -32.07994 -31.23101 -29.48560 -29.14273 -27.96028 -26.23887 -24.57317 -24.29754 -23.59647 -23.16977 -21.68109 -21.22158 -20.72040 -19.41871 -18.14930 -17.84933 -17.54663 -17.28730 -17.02414 -16.68066 -16.48221 -16.42294 -16.07097 -15.43797 -15.24711 -14.94388 -14.75658 -14.59291 -14.49218 -14.39207 -14.06544 -14.00444 -13.91434 -13.69332 -13.30535 -13.18712 -12.91591 -12.72614 -12.59356 -12.48297 -12.35395 -12.30094 -12.14460 -12.04309 -12.01239 -11.65302 -11.53653 -11.48029 -11.15107 -10.80433 -10.64545 -10.48830 -10.06953 -10.02113 -9.56322 -9.14112 -8.28486 -6.44918 0.23952 0.25860 1.42699 1.45023 1.55748 1.83841 2.21245 2.37920 2.89418 2.96952 3.06857 3.22684 3.60328 3.69351 3.73414 3.77679 3.81946 4.06424 4.18324 4.21318 4.23103 4.24598 4.34349 4.35882 4.38125 4.55214 4.61730 4.65232 4.69339 4.76993 4.83818 4.86155 4.93164 4.99171 5.02436 5.04741 5.08281 5.09920 5.14161 5.20718 5.26583 5.32238 5.35239 5.40349 5.46389 5.57592 5.74068 5.82876 5.84756 5.99968 6.14417 6.16261 6.66216 7.06115 7.15988 7.25620 7.69786 8.83804 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.003974 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.676670 B = 7044.295939 C = 8957.010397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.509 5.509 4 C 0.037 3.963 5 C -0.137 4.137 6 C -0.115 4.115 7 C 0.056 3.944 8 H 0.018 0.982 9 C 0.153 3.847 10 N -0.607 5.607 11 C 0.155 3.845 12 C -0.069 4.069 13 C -0.145 4.145 14 C 0.087 3.913 15 N -0.509 5.509 16 C 0.085 3.915 17 C -0.171 4.171 18 C 0.692 3.308 19 O -0.645 6.645 20 N -0.722 5.722 21 C 0.290 3.710 22 C -0.551 4.551 23 H 0.082 0.918 24 C 0.008 3.992 25 N -0.930 5.930 26 Si 0.981 3.019 27 H -0.271 1.271 28 H -0.285 1.285 29 H -0.254 1.254 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.004 0.996 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.135 0.865 45 H 0.168 0.832 46 H 0.184 0.816 47 H 0.161 0.839 48 H 0.124 0.876 49 H 0.398 0.602 50 H -0.018 1.018 51 H -0.018 1.018 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 21.433 3.858 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 N -0.234 5.234 4 C -0.090 4.090 5 C -0.175 4.175 6 C -0.154 4.154 7 C -0.054 4.054 8 H 0.036 0.964 9 C 0.030 3.970 10 N -0.342 5.342 11 C 0.032 3.968 12 C -0.079 4.079 13 C -0.165 4.165 14 C -0.069 4.069 15 N -0.219 5.219 16 C -0.071 4.071 17 C -0.192 4.192 18 C 0.393 3.607 19 O -0.528 6.528 20 N -0.377 5.377 21 C 0.166 3.834 22 C -0.589 4.589 23 H 0.100 0.900 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.804 3.196 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.178 1.178 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.022 0.978 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.153 0.847 45 H 0.185 0.815 46 H 0.201 0.799 47 H 0.178 0.822 48 H 0.142 0.858 49 H 0.235 0.765 50 H 0.000 1.000 51 H 0.000 1.000 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.546 21.726 3.086 25.788 hybrid contribution 0.283 -2.306 1.050 2.549 sum -13.263 19.420 4.136 23.877 Atomic orbital electron populations 1.21833 0.92856 1.02154 1.03179 1.22329 0.97145 0.89659 0.99522 1.63597 1.04673 1.11730 1.43369 1.22990 0.96971 0.98083 0.90951 1.22763 0.94780 1.02559 0.97410 1.22677 0.98765 0.96660 0.97296 1.22957 0.88658 0.97827 0.95927 0.96390 1.21392 0.98370 0.87758 0.89486 1.46996 1.27005 1.12503 1.47709 1.20652 0.86892 1.02984 0.86237 1.20920 0.96399 0.94733 0.95798 1.22315 1.00037 0.95153 0.99028 1.23302 0.93991 1.00620 0.89025 1.67692 1.14031 1.03855 1.36349 1.22890 0.95652 0.92086 0.96473 1.22253 1.00746 1.01244 0.94923 1.16328 0.82722 0.81245 0.80397 1.90831 1.29392 1.83637 1.48942 1.45517 1.30318 1.13534 1.48357 1.18344 0.89831 0.80299 0.94884 1.21527 1.11506 0.98266 1.27587 0.90031 1.25998 0.95202 1.00580 0.97403 1.70140 1.20909 1.22667 1.43129 0.85216 0.79299 0.76944 0.78146 1.19594 1.21036 1.17810 0.92467 0.91635 0.90642 0.91917 0.97773 0.88588 0.92580 0.92828 0.88465 0.91183 0.88301 0.87063 0.92218 0.90600 0.84697 0.81486 0.79927 0.82221 0.85834 0.76463 1.00031 1.00002 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.61 71.98 0.69 -1.71 16 2 C 0.04 0.96 4.80 86.30 0.41 1.38 16 3 N -0.51 -9.66 3.75 -860.55 -3.23 -12.89 16 4 C 0.04 0.54 6.18 86.66 0.54 1.07 16 5 C -0.14 -1.88 6.95 31.79 0.22 -1.66 16 6 C -0.12 -1.87 6.49 31.98 0.21 -1.67 16 7 C 0.06 1.30 2.80 45.38 0.13 1.43 16 8 H 0.02 0.58 7.70 -2.39 -0.02 0.56 16 9 C 0.15 3.83 5.18 86.38 0.45 4.28 16 10 N -0.61 -18.02 1.48 -844.18 -1.25 -19.28 16 11 C 0.15 3.52 3.38 85.63 0.29 3.81 16 12 C -0.07 -1.59 5.50 -19.67 -0.11 -1.70 16 13 C -0.15 -2.64 9.82 22.36 0.22 -2.42 16 14 C 0.09 1.74 11.18 84.68 0.95 2.69 16 15 N -0.51 -13.35 10.36 -195.84 -2.03 -15.38 16 16 C 0.08 2.29 11.18 84.68 0.95 3.24 16 17 C -0.17 -4.69 9.66 22.36 0.22 -4.47 16 18 C 0.69 29.44 8.17 179.06 1.46 30.91 16 19 O -0.65 -33.93 15.92 -4.00 -0.06 -34.00 16 20 N -0.72 -31.80 5.35 -482.30 -2.58 -34.38 16 21 C 0.29 16.25 5.43 85.63 0.46 16.71 16 22 C -0.55 -30.02 9.28 25.60 0.24 -29.78 16 23 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 24 C 0.01 0.44 5.46 84.66 0.46 0.90 16 25 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 26 Si 0.98 42.36 29.54 68.60 2.03 44.38 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 0.95 6.29 -2.39 -0.02 0.93 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.70 4.94 -2.39 -0.01 1.69 16 34 H 0.00 0.11 7.98 -2.39 -0.02 0.09 16 35 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.06 0.84 5.96 -2.38 -0.01 0.82 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.21 8.02 -2.39 -0.02 1.19 16 41 H 0.11 1.98 8.03 -2.38 -0.02 1.96 16 42 H 0.06 1.82 7.42 -2.39 -0.02 1.80 16 43 H 0.08 1.83 6.00 -2.38 -0.01 1.82 16 44 H 0.14 2.38 6.68 -2.39 -0.02 2.36 16 45 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 46 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 47 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 48 H 0.12 3.70 6.38 -2.91 -0.02 3.68 16 49 H 0.40 14.98 4.24 -92.71 -0.39 14.59 16 50 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 51 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 52 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -76.10 406.93 1.47 -74.64 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.53 Total: 30.06 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.78 Total: 23.00 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -8.80 Total: -138.09 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.06 Total: -34.00 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -76.10 1.47 -74.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.475 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds