Wall clock time and date at job start Wed Apr 1 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 C 1.50700 * 109.46832 * 240.00212 * 2 1 3 5 5 O 1.21288 * 119.99982 * 259.96239 * 4 2 1 6 6 N 1.34779 * 120.00124 * 79.96640 * 4 2 1 7 7 C 1.46494 * 119.99631 * 4.99698 * 6 4 2 8 8 C 1.46500 * 119.99905 * 185.00208 * 6 4 2 9 9 C 1.50697 * 109.47471 * 89.99797 * 8 6 4 10 10 H 1.08001 * 119.99521 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00082 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00216 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00166 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47314 * 89.99779 * 13 11 9 15 15 H 1.48495 * 109.47329 * 210.00004 * 13 11 9 16 16 H 1.48507 * 109.46845 * 330.00099 * 13 11 9 17 17 N 1.46900 * 109.47220 * 120.00753 * 2 1 3 18 18 C 1.48063 * 110.99575 * 303.73021 * 17 2 1 19 19 C 1.53695 * 112.47388 * 192.20223 * 18 17 2 20 20 C 1.50802 * 112.09736 * 318.55071 * 19 18 17 21 21 N 1.47909 * 108.49907 * 92.54833 * 20 19 18 22 22 C 1.39167 * 111.00381 * 153.78842 * 21 20 19 23 23 C 1.39473 * 120.86703 * 127.69096 * 22 21 20 24 24 C 1.37890 * 119.06815 * 179.73285 * 23 22 21 25 25 N 1.31993 * 120.84346 * 0.55505 * 24 23 22 26 26 C 1.31995 * 121.91177 * 359.71990 * 25 24 23 27 27 C 1.37898 * 120.83949 * 359.97438 * 26 25 24 28 28 C 1.40012 * 114.06727 * 280.08098 * 21 20 19 29 29 C 1.44569 * 111.00074 * 176.04440 * 17 2 1 30 30 H 1.08998 * 109.47580 * 69.63066 * 1 2 3 31 31 H 1.09001 * 109.47566 * 189.63201 * 1 2 3 32 32 H 1.08998 * 109.47248 * 309.63266 * 1 2 3 33 33 H 1.09000 * 109.46998 * 93.62728 * 7 6 4 34 34 H 1.09007 * 109.46982 * 213.62110 * 7 6 4 35 35 H 1.08999 * 109.47897 * 333.62075 * 7 6 4 36 36 H 1.09007 * 109.46819 * 210.00020 * 8 6 4 37 37 H 1.08997 * 109.47008 * 329.99190 * 8 6 4 38 38 H 0.96995 * 120.00402 * 179.97438 * 12 11 9 39 39 H 1.09005 * 108.88498 * 312.97442 * 18 17 2 40 40 H 1.09003 * 108.88825 * 71.42820 * 18 17 2 41 41 H 1.09003 * 108.95896 * 79.22377 * 19 18 17 42 42 H 1.09001 * 108.96277 * 197.96630 * 19 18 17 43 43 H 1.08999 * 109.63608 * 332.85066 * 20 19 18 44 44 H 1.08995 * 109.63670 * 212.25086 * 20 19 18 45 45 H 1.08009 * 120.46504 * 359.97438 * 23 22 21 46 46 H 1.08005 * 119.57930 * 180.25122 * 24 23 22 47 47 H 1.07991 * 119.58218 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.46672 * 180.02562 * 27 26 25 49 49 H 1.09001 * 108.96033 * 182.47614 * 28 21 20 50 50 H 1.08994 * 108.95888 * 301.13457 * 28 21 20 51 51 H 1.09005 * 109.57333 * 100.53423 * 29 17 2 52 52 H 1.08998 * 109.68262 * 340.22069 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4070 -1.8615 -1.1557 6 7 2.0651 -0.0665 -2.4141 7 6 1.7170 1.3547 -2.4847 8 6 2.4489 -0.7880 -3.6300 9 6 1.2206 -1.3797 -4.2720 10 1 0.2509 -1.2326 -3.8197 11 6 1.3345 -2.1079 -5.4372 12 7 2.5151 -2.2857 -5.9887 13 14 -0.1881 -2.8407 -6.2333 14 1 -0.7638 -1.8643 -7.1927 15 1 0.1807 -4.0850 -6.9550 16 1 -1.1919 -3.1554 -5.1851 17 7 2.0197 -0.6926 1.1993 18 6 1.4729 -0.0752 2.4290 19 6 2.1836 -0.5675 3.6997 20 6 2.4536 -2.0506 3.6603 21 7 3.8066 -2.2667 3.1032 22 6 4.3481 -3.4651 3.5586 23 6 4.8567 -4.4063 2.6638 24 6 5.3896 -5.5790 3.1560 25 7 5.4120 -5.8200 4.4536 26 6 4.9356 -4.9573 5.3318 27 6 4.3913 -3.7586 4.9215 28 6 3.8686 -2.1868 1.7067 29 6 3.4618 -0.7931 1.1871 30 1 -0.3634 0.3577 -0.9634 31 1 -0.3634 -1.0132 0.1719 32 1 -0.3633 0.6555 0.7914 33 1 2.6231 1.9551 -2.4039 34 1 1.2275 1.5620 -3.4363 35 1 1.0414 1.6044 -1.6666 36 1 2.9264 -0.0985 -4.3262 37 1 3.1456 -1.5863 -3.3742 38 1 2.5953 -2.7983 -6.8082 39 1 1.5836 1.0070 2.3596 40 1 0.4121 -0.3153 2.5027 41 1 3.1307 -0.0379 3.8035 42 1 1.5578 -0.3457 4.5641 43 1 1.7143 -2.5408 3.0269 44 1 2.4037 -2.4590 4.6696 45 1 4.8370 -4.2176 1.6005 46 1 5.7895 -6.3118 2.4708 47 1 4.9726 -5.1933 6.3849 48 1 4.0037 -3.0569 5.6453 49 1 4.8875 -2.4013 1.3845 50 1 3.1992 -2.9332 1.2792 51 1 3.8869 -0.0244 1.8325 52 1 3.8304 -0.6606 0.1699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602846505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:08 Heat of formation + Delta-G solvation = 40.206812 kcal Electronic energy + Delta-G solvation = -31733.616707 eV Core-core repulsion = 27734.232087 eV Total energy + Delta-G solvation = -3999.384620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05481 -39.80932 -38.50274 -36.45528 -34.82233 -33.26655 -32.66996 -32.01802 -31.10656 -30.40849 -27.90846 -26.92014 -26.62431 -25.84034 -24.03865 -23.38369 -22.79899 -21.97154 -20.79912 -19.93565 -18.44349 -18.00722 -16.77939 -16.56577 -16.46360 -16.13203 -15.69466 -15.62960 -15.12023 -14.85089 -14.51688 -14.44562 -14.35400 -13.97124 -13.91620 -13.76271 -13.44970 -13.10828 -12.99699 -12.50056 -12.27625 -12.10512 -12.05722 -11.97883 -11.82012 -11.73004 -11.47490 -11.29091 -11.19205 -11.16326 -10.94788 -10.88393 -10.70083 -10.59538 -10.28045 -10.18103 -9.64965 -9.53942 -9.23409 -8.84608 -8.46499 -8.19552 -8.14126 -7.65957 -6.07202 -4.12209 1.10228 1.23927 3.27544 3.33114 3.35522 3.40024 3.48012 3.55645 3.84420 4.11463 4.41915 4.42566 4.57826 4.64417 4.84211 4.87084 4.90634 5.00203 5.13433 5.15060 5.18980 5.21320 5.27973 5.29628 5.38012 5.43281 5.47648 5.52572 5.57773 5.64970 5.68784 5.73032 5.75545 5.79535 5.83884 5.87389 5.92721 5.98489 6.01882 6.12609 6.16722 6.32819 6.53179 6.86286 6.95180 7.10935 7.17419 7.25137 7.41298 7.51253 7.89355 7.98016 8.20169 8.38547 8.87264 9.07574 9.53208 11.00800 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.002915 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.077517 B = 9604.047123 C =11120.532120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.055 0.945 4 C 0.509 3.491 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.532 5.532 18 C 0.062 3.938 19 C -0.121 4.121 20 C 0.071 3.929 21 N -0.494 5.494 22 C 0.167 3.833 23 C -0.226 4.226 24 C 0.123 3.877 25 N -0.514 5.514 26 C 0.116 3.884 27 C -0.205 4.205 28 C 0.066 3.934 29 C 0.074 3.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.142 0.858 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.133 0.867 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.044 0.956 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 5.973 21.313 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 H 0.072 0.928 4 C 0.295 3.705 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.065 4.065 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.258 5.258 18 C -0.065 4.065 19 C -0.159 4.159 20 C -0.053 4.053 21 N -0.207 5.207 22 C 0.059 3.941 23 C -0.249 4.249 24 C -0.033 4.033 25 N -0.225 5.225 26 C -0.041 4.041 27 C -0.228 4.228 28 C -0.062 4.062 29 C -0.055 4.055 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.160 0.840 46 H 0.171 0.829 47 H 0.169 0.831 48 H 0.151 0.849 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.079 4.498 21.564 22.054 hybrid contribution -1.267 0.924 -1.280 2.025 sum -0.188 5.422 20.284 20.997 Atomic orbital electron populations 1.21786 0.92372 1.03352 1.02268 1.21668 0.97198 0.95551 0.89734 0.92758 1.20040 0.79363 0.87204 0.83938 1.90664 1.47048 1.17006 1.85082 1.48159 1.66648 1.09855 1.09046 1.21707 0.99385 0.82581 1.02798 1.19267 0.96352 0.92165 0.79458 1.21416 0.93729 1.33315 1.08064 0.92516 1.24931 0.96188 0.95989 0.96960 1.69926 1.22592 1.40686 1.20118 0.86510 0.82997 0.78707 0.79295 1.20657 1.21059 1.19884 1.60424 1.10274 1.54438 1.00672 1.22434 0.99501 0.96060 0.88490 1.21480 1.01451 0.95928 0.97064 1.22004 0.86438 0.97145 0.99748 1.56227 1.22481 1.28969 1.12993 1.19259 0.93984 0.87295 0.93521 1.22407 1.05926 0.95188 1.01371 1.22597 0.93883 0.94967 0.91852 1.67713 1.18312 1.33350 1.03111 1.22534 0.92775 0.89460 0.99297 1.21730 1.06609 0.99949 0.94531 1.21199 1.01711 0.98882 0.84449 1.21792 0.86936 0.95593 1.01148 0.91255 0.90966 0.92234 0.93858 0.90820 0.92261 0.95134 0.93772 0.92694 0.94753 0.90607 0.90759 0.90520 0.91401 0.90343 0.84028 0.82867 0.83053 0.84917 0.90437 0.91964 0.93734 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.14 37.16 0.30 -1.50 16 2 C 0.07 1.01 1.58 -68.86 -0.11 0.90 16 3 H 0.05 0.70 6.92 -51.93 -0.36 0.34 16 4 C 0.51 10.06 5.54 -10.98 -0.06 10.00 16 5 O -0.52 -12.40 14.89 5.55 0.08 -12.31 16 6 N -0.60 -12.35 2.86 -182.95 -0.52 -12.87 16 7 C 0.08 1.21 9.96 59.84 0.60 1.81 16 8 C 0.25 6.32 5.22 -5.20 -0.03 6.29 16 9 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 N -0.53 -7.16 3.59 -227.72 -0.82 -7.98 16 18 C 0.06 0.62 4.63 -2.82 -0.01 0.61 16 19 C -0.12 -1.04 5.36 -27.47 -0.15 -1.19 16 20 C 0.07 0.72 5.20 -4.37 -0.02 0.69 16 21 N -0.49 -5.80 4.12 -175.77 -0.72 -6.53 16 22 C 0.17 2.00 5.69 -83.61 -0.48 1.53 16 23 C -0.23 -2.81 8.79 -39.25 -0.34 -3.16 16 24 C 0.12 1.49 11.17 -17.61 -0.20 1.29 16 25 N -0.51 -6.47 10.36 -13.35 -0.14 -6.61 16 26 C 0.12 1.22 11.17 -17.61 -0.20 1.02 16 27 C -0.21 -2.12 8.99 -39.24 -0.35 -2.47 16 28 C 0.07 0.90 3.89 -6.75 -0.03 0.88 16 29 C 0.07 1.02 4.57 -4.45 -0.02 1.00 16 30 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.59 7.18 -51.93 -0.37 0.21 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 35 H 0.06 0.74 5.02 -51.93 -0.26 0.47 16 36 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 37 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.03 0.32 8.03 -51.93 -0.42 -0.10 16 40 H 0.08 0.72 7.15 -51.93 -0.37 0.34 16 41 H 0.07 0.69 7.23 -51.93 -0.38 0.31 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.82 7.57 -51.93 -0.39 0.43 16 44 H 0.08 0.67 6.18 -51.93 -0.32 0.35 16 45 H 0.14 1.79 5.99 -52.48 -0.31 1.47 16 46 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.13 1.08 7.17 -52.49 -0.38 0.71 16 49 H 0.08 1.06 6.70 -51.93 -0.35 0.71 16 50 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 51 H 0.04 0.56 6.93 -51.93 -0.36 0.20 16 52 H 0.08 1.32 5.94 -51.93 -0.31 1.01 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -33.07 397.60 -10.15 -43.22 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.22 Total: 1.69 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.51 Total: 4.36 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -1.47 Total: -59.58 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.07 -10.15 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602846505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.423 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds