Wall clock time and date at job start Wed Apr 1 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46935 * 2 1 4 4 C 1.46952 * 111.00002 * 190.00136 * 3 2 1 5 5 C 1.53058 * 109.36328 * 183.19115 * 4 3 2 6 6 N 1.46953 * 109.36432 * 301.59838 * 5 4 3 7 7 C 1.39918 * 111.00037 * 183.19003 * 6 5 4 8 8 C 1.38876 * 120.00662 * 180.02562 * 7 6 5 9 9 C 1.38073 * 119.99484 * 180.02562 * 8 7 6 10 10 C 1.38844 * 120.00535 * 359.97438 * 9 8 7 11 11 N 1.40193 * 119.99271 * 180.02562 * 10 9 8 12 12 C 1.34774 * 120.00284 * 30.97070 * 11 10 9 13 13 O 1.21596 * 119.99868 * 5.26920 * 12 11 10 14 14 N 1.34774 * 120.00068 * 185.25891 * 12 11 10 15 15 C 1.46509 * 120.00027 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.46791 * 325.00396 * 15 14 12 17 17 C 1.52994 * 109.47039 * 85.00157 * 15 14 12 18 18 C 1.50705 * 109.46940 * 205.00547 * 15 14 12 19 19 H 1.07998 * 119.99949 * 354.34709 * 18 15 14 20 20 C 1.37878 * 119.99585 * 174.34712 * 18 15 14 21 21 N 1.31514 * 119.99724 * 158.35256 * 20 18 15 22 22 Si 1.86799 * 120.00303 * 338.62996 * 20 18 15 23 23 H 1.48496 * 109.47288 * 269.72449 * 22 20 18 24 24 H 1.48502 * 109.46953 * 29.72502 * 22 20 18 25 25 H 1.48497 * 109.47115 * 149.72339 * 22 20 18 26 26 C 1.38835 * 120.01037 * 0.27964 * 10 9 8 27 27 C 1.38083 * 120.00204 * 359.44917 * 26 10 9 28 28 C 1.46952 * 110.88077 * 59.32193 * 6 5 4 29 29 C 1.46958 * 111.00473 * 313.80356 * 3 2 1 30 30 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47097 * 299.99405 * 1 2 3 32 32 H 1.09002 * 109.47310 * 60.00033 * 1 2 3 33 33 H 1.09004 * 109.47143 * 240.00906 * 2 1 3 34 34 H 1.08989 * 109.47240 * 120.00208 * 2 1 3 35 35 H 1.09001 * 109.49361 * 63.22600 * 4 3 2 36 36 H 1.08999 * 109.49151 * 303.15751 * 4 3 2 37 37 H 1.09005 * 109.48500 * 181.63034 * 5 4 3 38 38 H 1.08998 * 109.49059 * 61.57071 * 5 4 3 39 39 H 1.08001 * 120.00505 * 0.04207 * 8 7 6 40 40 H 1.08002 * 119.99578 * 180.02562 * 9 8 7 41 41 H 0.96997 * 119.99657 * 210.97406 * 11 10 9 42 42 H 0.97003 * 120.00271 * 0.02562 * 14 12 11 43 43 H 1.09004 * 109.46892 * 53.83384 * 17 15 14 44 44 H 1.08998 * 109.47014 * 173.83107 * 17 15 14 45 45 H 1.08996 * 109.47384 * 293.83544 * 17 15 14 46 46 H 0.97001 * 119.99984 * 355.21746 * 21 20 18 47 47 H 1.07996 * 119.99776 * 179.72270 * 26 10 9 48 48 H 1.07993 * 119.99963 * 180.29405 * 27 26 10 49 49 H 1.09002 * 109.48867 * 60.64198 * 28 6 5 50 50 H 1.08999 * 109.49151 * 180.71233 * 28 6 5 51 51 H 1.08998 * 109.48985 * 296.78069 * 29 3 2 52 52 H 1.09006 * 109.48831 * 56.83848 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2383 5 6 3.9515 2.8811 -0.1516 6 7 3.2318 3.6942 -1.1418 7 6 3.6981 5.0134 -1.1418 8 6 3.1444 5.9458 -2.0094 9 6 3.6052 7.2474 -2.0095 10 6 4.6216 7.6242 -1.1420 11 7 5.0889 8.9460 -1.1419 12 6 4.2516 9.9567 -1.4480 13 8 3.0702 9.7336 -1.6302 14 7 4.7236 11.2148 -1.5518 15 6 3.8133 12.3137 -1.8840 16 1 3.0498 11.9567 -2.5751 17 6 3.1453 12.8263 -0.6066 18 6 4.5906 13.4326 -2.5283 19 1 5.6671 13.3747 -2.5932 20 6 3.9274 14.5300 -3.0349 21 7 4.5682 15.6662 -3.2022 22 14 2.1166 14.4054 -3.4765 23 1 1.9806 13.9868 -4.8947 24 1 1.4611 13.4023 -2.5993 25 1 1.4685 15.7279 -3.2864 26 6 5.1789 6.6910 -0.2782 27 6 4.7146 5.3905 -0.2738 28 6 1.7824 3.6480 -0.9035 29 6 1.2999 2.1982 -0.9901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.6875 1.0339 -1.2295 36 1 3.9806 0.8321 0.5149 37 1 5.0214 2.9211 -0.3567 38 1 3.7578 3.2698 0.8481 39 1 2.3533 5.6529 -2.6837 40 1 3.1743 7.9726 -2.6839 41 1 6.0148 9.1330 -0.9217 42 1 5.6661 11.3928 -1.4067 43 1 3.9107 13.0811 0.1266 44 1 2.5533 13.7122 -0.8365 45 1 2.4962 12.0510 -0.1997 46 1 5.4876 15.7527 -2.9051 47 1 5.9726 6.9832 0.3933 48 1 5.1449 4.6658 0.4014 49 1 1.5640 4.0453 0.0877 50 1 1.2707 4.2471 -1.6567 51 1 1.4936 1.8095 -1.9899 52 1 0.2300 2.1580 -0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775455577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:20 Heat of formation + Delta-G solvation = 22.071345 kcal Electronic energy + Delta-G solvation = -29977.543164 eV Core-core repulsion = 25977.372132 eV Total energy + Delta-G solvation = -4000.171033 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.70833 -39.87718 -38.38636 -36.36523 -34.96805 -33.92448 -32.46673 -31.97819 -31.28007 -30.56583 -29.67361 -28.06006 -26.01877 -24.83581 -24.46719 -23.03707 -21.94498 -21.90173 -20.84038 -19.99665 -19.78644 -18.43783 -17.91326 -17.28626 -16.83510 -15.87769 -15.67956 -15.49928 -15.27701 -15.19262 -14.84149 -14.68314 -14.17195 -14.07234 -13.83587 -13.66032 -13.36440 -13.20098 -12.88540 -12.72705 -12.60612 -12.43766 -12.29406 -12.18396 -12.09438 -11.68675 -11.66288 -11.58944 -11.35843 -11.30141 -11.14576 -10.98667 -10.54448 -10.29947 -10.16727 -9.77467 -9.58109 -9.20058 -9.13569 -8.83415 -8.73306 -8.31864 -8.21683 -7.39568 -6.60862 -4.22361 1.39217 1.47270 3.09363 3.39793 3.41319 3.45658 3.46569 3.61273 3.65970 4.01704 4.41251 4.43474 4.51974 4.66052 4.70019 4.76833 4.83155 4.94169 4.97749 5.00111 5.02132 5.07386 5.11400 5.12755 5.32020 5.37398 5.41962 5.46515 5.51695 5.53719 5.55168 5.67511 5.69309 5.74069 6.00202 6.07134 6.18156 6.37005 6.46108 6.54413 6.58422 6.60653 6.65495 6.68472 6.84351 6.91565 6.98331 7.14665 7.30765 7.38704 7.48661 7.79329 8.23543 8.61343 8.72662 9.10705 9.44529 10.78111 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.001842 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.130751 B =15197.794746 C =15946.381534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.056 3.944 5 C 0.054 3.946 6 N -0.488 5.488 7 C 0.080 3.920 8 C -0.115 4.115 9 C -0.099 4.099 10 C 0.160 3.840 11 N -0.695 5.695 12 C 0.693 3.307 13 O -0.584 6.584 14 N -0.714 5.714 15 C 0.259 3.741 16 H 0.044 0.956 17 C -0.152 4.152 18 C -0.623 4.623 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.892 5.892 22 Si 1.035 2.965 23 H -0.283 1.283 24 H -0.270 1.270 25 H -0.284 1.284 26 C -0.133 4.133 27 C -0.147 4.147 28 C 0.058 3.942 29 C 0.051 3.949 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.402 0.598 42 H 0.390 0.610 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.030 0.970 46 H 0.270 0.730 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.052 0.948 50 H 0.087 0.913 51 H 0.043 0.957 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -30.592 7.516 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.076 4.076 3 N -0.267 5.267 4 C -0.072 4.072 5 C -0.074 4.074 6 N -0.205 5.205 7 C -0.018 4.018 8 C -0.136 4.136 9 C -0.120 4.120 10 C 0.064 3.936 11 N -0.342 5.342 12 C 0.394 3.606 13 O -0.463 6.463 14 N -0.365 5.365 15 C 0.155 3.845 16 H 0.062 0.938 17 C -0.211 4.211 18 C -0.661 4.661 19 H 0.080 0.920 20 C -0.163 4.163 21 N -0.524 5.524 22 Si 0.862 3.138 23 H -0.209 1.209 24 H -0.195 1.195 25 H -0.210 1.210 26 C -0.154 4.154 27 C -0.169 4.169 28 C -0.068 4.068 29 C -0.077 4.077 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.237 0.763 42 H 0.223 0.777 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.061 0.939 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.964 -29.853 6.658 30.842 hybrid contribution 2.465 -0.642 0.781 2.664 sum -1.499 -30.494 7.439 31.424 Atomic orbital electron populations 1.21943 0.94888 1.02016 1.02652 1.22075 0.95892 0.88849 1.00815 1.62255 1.04026 1.10937 1.49503 1.22186 0.88140 0.96373 1.00482 1.22311 0.98536 0.92412 0.94131 1.59438 1.04857 1.08438 1.47761 1.18800 0.97738 0.88293 0.96929 1.20637 1.01455 0.92106 0.99380 1.21212 0.96893 0.95738 0.98167 1.17526 0.97119 0.83131 0.95872 1.42845 1.13604 1.04118 1.73632 1.16166 0.84990 0.80978 0.78509 1.90867 1.14640 1.83193 1.57561 1.45619 1.12642 1.05379 1.72818 1.19008 0.89478 0.83277 0.92743 0.93802 1.22388 0.99423 0.99673 0.99609 1.22023 0.94844 1.04403 1.44821 0.92015 1.25648 1.06021 0.91322 0.93289 1.70839 1.13406 1.24085 1.44089 0.84157 0.75753 0.76347 0.77532 1.20908 1.19469 1.20954 1.20658 1.02614 0.93180 0.98975 1.20956 1.00213 0.96059 0.99638 1.22328 0.86412 0.96563 1.01469 1.22316 0.98904 0.92618 0.93901 0.92109 0.91675 0.92246 0.94844 0.90635 0.93846 0.90033 0.89563 0.92814 0.85799 0.83883 0.76301 0.77729 0.93883 0.92665 0.95110 0.91957 0.85956 0.85635 0.93014 0.89488 0.93880 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.17 37.16 0.34 -0.50 16 2 C 0.05 0.32 6.00 -3.82 -0.02 0.29 16 3 N -0.54 -4.22 4.86 -234.47 -1.14 -5.36 16 4 C 0.06 0.42 5.58 -3.77 -0.02 0.40 16 5 C 0.05 0.45 4.30 -3.77 -0.02 0.43 16 6 N -0.49 -5.02 4.76 -170.90 -0.81 -5.84 16 7 C 0.08 0.96 5.64 -83.69 -0.47 0.48 16 8 C -0.12 -1.53 9.19 -39.41 -0.36 -1.90 16 9 C -0.10 -1.55 8.66 -39.42 -0.34 -1.89 16 10 C 0.16 2.37 6.33 -83.59 -0.53 1.84 16 11 N -0.69 -10.48 5.37 -14.17 -0.08 -10.56 16 12 C 0.69 13.55 8.29 -86.92 -0.72 12.83 16 13 O -0.58 -13.39 13.53 5.28 0.07 -13.31 16 14 N -0.71 -14.42 5.07 -59.81 -0.30 -14.72 16 15 C 0.26 6.22 2.11 -69.08 -0.15 6.08 16 16 H 0.04 1.15 5.97 -51.93 -0.31 0.84 16 17 C -0.15 -3.47 8.92 37.15 0.33 -3.13 16 18 C -0.62 -16.73 8.97 -34.44 -0.31 -17.04 16 19 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 20 C 0.04 1.24 5.23 -17.82 -0.09 1.15 16 21 N -0.89 -26.31 13.70 55.43 0.76 -25.55 16 22 Si 1.04 24.95 26.35 -169.99 -4.48 20.47 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.23 5.93 56.52 0.34 -5.89 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.60 9.95 -39.42 -0.39 -1.99 16 27 C -0.15 -1.66 8.81 -39.40 -0.35 -2.01 16 28 C 0.06 0.55 5.38 -3.77 -0.02 0.53 16 29 C 0.05 0.40 4.93 -3.77 -0.02 0.38 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.32 6.26 -51.93 -0.33 -0.01 16 33 H 0.03 0.21 8.08 -51.93 -0.42 -0.21 16 34 H 0.08 0.43 8.14 -51.94 -0.42 0.00 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.66 7.17 -51.93 -0.37 0.29 16 38 H 0.05 0.48 7.58 -51.93 -0.39 0.09 16 39 H 0.12 1.48 7.18 -52.49 -0.38 1.10 16 40 H 0.14 2.58 6.23 -52.49 -0.33 2.25 16 41 H 0.40 4.70 8.83 -40.82 -0.36 4.34 16 42 H 0.39 6.90 8.55 -40.82 -0.35 6.55 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.27 5.70 -51.93 -0.30 0.97 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.13 1.13 5.80 -52.49 -0.30 0.83 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.80 6.82 -51.93 -0.35 0.44 16 51 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.09 0.61 5.99 -51.93 -0.31 0.29 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -31.98 399.42 -11.46 -43.44 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.36 Total: 9.45 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.14 Total: -4.05 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -1.57 Total: -62.02 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.48 Total: 20.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.98 -11.46 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775455577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.516 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds