Wall clock time and date at job start Wed Apr 1 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46910 * 109.46830 * 2 1 4 4 C 1.46842 * 110.99886 * 66.04381 * 3 2 1 5 5 C 1.53034 * 109.52256 * 174.15869 * 4 3 2 6 6 C 1.53120 * 109.27702 * 59.18256 * 5 4 3 7 7 H 1.09005 * 109.52503 * 62.31065 * 6 5 4 8 8 N 1.46502 * 109.52479 * 182.43956 * 6 5 4 9 9 C 1.46498 * 119.99876 * 60.00071 * 8 6 5 10 10 C 1.34778 * 120.00305 * 239.99751 * 8 6 5 11 11 O 1.21583 * 119.99649 * 0.02562 * 10 8 6 12 12 N 1.34768 * 120.00033 * 179.97438 * 10 8 6 13 13 C 1.39460 * 119.99856 * 185.00345 * 12 10 8 14 14 C 1.38645 * 119.65036 * 185.28824 * 13 12 10 15 15 C 1.40815 * 118.67749 * 179.97438 * 14 13 12 16 16 C 1.41545 * 120.99905 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00153 * 153.83815 * 16 15 14 18 18 C 1.40031 * 120.00139 * 333.83377 * 16 15 14 19 19 N 1.30749 * 119.99866 * 350.12762 * 18 16 15 20 20 Si 1.86798 * 120.00363 * 170.12140 * 18 16 15 21 21 H 1.48504 * 109.46851 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47375 * 120.00115 * 20 18 16 23 23 H 1.48495 * 109.47230 * 240.00442 * 20 18 16 24 24 C 1.41159 * 118.00541 * 0.02562 * 15 14 13 25 25 C 1.36589 * 119.12986 * 359.97438 * 24 15 14 26 26 N 1.32076 * 121.25856 * 359.97438 * 25 24 15 27 27 C 1.53117 * 109.15930 * 302.34553 * 6 5 4 28 28 H 1.09000 * 109.50547 * 297.71117 * 27 6 5 29 29 C 1.53005 * 109.50578 * 177.59455 * 27 6 5 30 30 C 1.46850 * 110.99715 * 301.83471 * 3 2 1 31 31 H 1.09001 * 109.47117 * 300.00030 * 1 2 3 32 32 H 1.09003 * 109.47293 * 60.00528 * 1 2 3 33 33 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47528 * 240.00253 * 2 1 3 35 35 H 1.09003 * 109.47293 * 119.99472 * 2 1 3 36 36 H 1.09002 * 109.46150 * 54.14860 * 4 3 2 37 37 H 1.08999 * 109.45633 * 294.17297 * 4 3 2 38 38 H 1.08996 * 109.50639 * 299.24158 * 5 4 3 39 39 H 1.09005 * 109.53690 * 179.13731 * 5 4 3 40 40 H 1.09000 * 109.46799 * 270.00040 * 9 8 6 41 41 H 1.09000 * 109.47208 * 29.99515 * 9 8 6 42 42 H 1.08998 * 109.47450 * 150.00009 * 9 8 6 43 43 H 0.96994 * 120.00261 * 4.99855 * 12 10 8 44 44 H 1.08002 * 120.66091 * 0.26827 * 14 13 12 45 45 H 0.97002 * 120.00156 * 180.02562 * 19 18 16 46 46 H 1.08003 * 120.43809 * 180.02562 * 24 15 14 47 47 H 1.08006 * 119.37480 * 180.02562 * 25 24 15 48 48 H 1.09006 * 109.46900 * 59.99596 * 29 27 6 49 49 H 1.08990 * 109.47243 * 179.97438 * 29 27 6 50 50 H 1.08998 * 109.47247 * 300.00434 * 29 27 6 51 51 H 1.08996 * 109.46333 * 305.85257 * 30 3 2 52 52 H 1.09003 * 109.46155 * 65.82411 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6702 2.0667 1.2528 5 6 2.3183 3.4528 1.2788 6 6 1.8232 4.2650 0.0789 7 1 0.7445 4.4032 0.1526 8 7 2.4845 5.5721 0.0659 9 6 3.9441 5.6536 -0.0306 10 6 1.7503 6.6997 0.1427 11 8 0.5390 6.6320 0.2231 12 7 2.3588 7.9022 0.1312 13 6 1.6101 9.0643 0.3154 14 6 2.2232 10.3018 0.1931 15 6 1.4478 11.4618 0.3828 16 6 2.0235 12.7499 0.2701 17 1 1.4082 13.5944 -0.0031 18 6 3.3908 12.9295 0.5130 19 7 4.0965 11.9568 1.0282 20 14 4.2067 14.5585 0.1009 21 1 3.1972 15.4881 -0.4665 22 1 4.7843 15.1491 1.3349 23 1 5.2870 14.3337 -0.8928 24 6 0.0793 11.3014 0.6897 25 6 -0.4364 10.0406 0.7897 26 7 0.3202 8.9740 0.6044 27 6 2.1565 3.5100 -1.2109 28 1 3.2377 3.4070 -1.3032 29 6 1.6121 4.2857 -2.4121 30 6 1.5132 2.1222 -1.1648 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0316 1.4810 2.0980 37 1 0.5872 2.1708 1.3197 38 1 3.4020 3.3490 1.2257 39 1 2.0465 3.9650 2.2019 40 1 4.3751 5.6490 0.9705 41 1 4.3195 4.7979 -0.5917 42 1 4.2236 6.5746 -0.5423 43 1 3.3174 7.9594 -0.0050 44 1 3.2735 10.3746 -0.0475 45 1 5.0436 12.0812 1.1969 46 1 -0.5519 12.1644 0.8426 47 1 -1.4830 9.9133 1.0239 48 1 2.0681 5.2753 -2.4425 49 1 1.8501 3.7481 -3.3299 50 1 0.5308 4.3866 -2.3197 51 1 1.7606 1.5768 -2.0754 52 1 0.4309 2.2260 -1.0864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871724943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:11 Heat of formation + Delta-G solvation = 1.541251 kcal Electronic energy + Delta-G solvation = -31257.409247 eV Core-core repulsion = 27256.347963 eV Total energy + Delta-G solvation = -4001.061284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80462 -40.58323 -39.58450 -37.11703 -36.09531 -35.62953 -34.31095 -33.04529 -32.39945 -30.61732 -29.83340 -28.01190 -27.91801 -27.38174 -25.65366 -23.84047 -23.62331 -23.09195 -22.03342 -21.04702 -20.20577 -19.54439 -19.14803 -17.69397 -17.28229 -16.88138 -16.75882 -16.23539 -16.20316 -16.05007 -15.91847 -15.43351 -15.40261 -14.80300 -14.68443 -14.65221 -14.38547 -14.32421 -14.16738 -13.89577 -13.61021 -13.35167 -13.15871 -13.12527 -12.96437 -12.86792 -12.85070 -12.69756 -12.67631 -12.20199 -12.06603 -11.86284 -11.80850 -11.68830 -11.52747 -11.48642 -11.38666 -11.19629 -11.13239 -9.91946 -9.62010 -9.58300 -9.25221 -8.83686 -8.56786 -6.57325 0.83611 1.00691 1.41945 1.56226 1.56593 1.56829 2.21119 2.27116 2.83691 2.90106 2.95690 3.60950 3.76224 3.82313 3.93022 4.06021 4.10908 4.20681 4.25090 4.32769 4.35538 4.41135 4.48801 4.56093 4.60033 4.62825 4.68330 4.71981 4.80321 4.81762 4.84252 4.88766 4.92461 4.93274 4.99379 5.07188 5.10357 5.12807 5.16072 5.20876 5.24929 5.31310 5.38454 5.50024 5.58921 5.66825 5.87045 5.97313 6.10586 6.16289 6.25059 6.56507 6.79490 6.82995 6.89556 7.59787 7.90111 8.30193 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.002290 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.998178 B =12224.361262 C =12762.186811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.061 3.939 5 C -0.117 4.117 6 C 0.162 3.838 7 H 0.061 0.939 8 N -0.619 5.619 9 C 0.071 3.929 10 C 0.691 3.309 11 O -0.581 6.581 12 N -0.661 5.661 13 C 0.352 3.648 14 C -0.259 4.259 15 C 0.113 3.887 16 C -0.482 4.482 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.817 5.817 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.262 1.262 24 C -0.295 4.295 25 C 0.112 3.888 26 N -0.579 5.579 27 C -0.086 4.086 28 H 0.096 0.904 29 C -0.137 4.137 30 C 0.066 3.934 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.417 0.583 44 H 0.129 0.871 45 H 0.291 0.709 46 H 0.116 0.884 47 H 0.146 0.854 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.034 0.966 51 H 0.093 0.907 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -20.522 -3.423 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.076 4.076 3 N -0.261 5.261 4 C -0.067 4.067 5 C -0.156 4.156 6 C 0.058 3.942 7 H 0.080 0.920 8 N -0.356 5.356 9 C -0.071 4.071 10 C 0.393 3.607 11 O -0.456 6.456 12 N -0.312 5.312 13 C 0.124 3.876 14 C -0.285 4.285 15 C 0.105 3.895 16 C -0.512 4.512 17 H 0.101 0.899 18 C -0.181 4.181 19 N -0.443 5.443 20 Si 0.811 3.189 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.186 1.186 24 C -0.319 4.319 25 C -0.041 4.041 26 N -0.299 5.299 27 C -0.106 4.106 28 H 0.114 0.886 29 C -0.195 4.195 30 C -0.062 4.062 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.256 0.744 44 H 0.146 0.854 45 H 0.102 0.898 46 H 0.134 0.866 47 H 0.164 0.836 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.053 0.947 51 H 0.111 0.889 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.420 -21.581 -3.228 22.264 hybrid contribution -0.083 1.924 0.054 1.927 sum 4.338 -19.657 -3.174 20.378 Atomic orbital electron populations 1.22426 0.98389 1.02832 1.01432 1.22222 0.92720 0.88832 1.03834 1.62211 1.59291 1.02716 1.01893 1.22015 0.97562 0.94094 0.93057 1.21875 1.02319 0.94576 0.96800 1.21045 0.96856 0.80371 0.95954 0.92038 1.47112 1.07457 1.03687 1.77365 1.21952 0.78271 1.04022 1.02869 1.16192 0.85308 0.80919 0.78302 1.90942 1.13302 1.85485 1.55897 1.42631 1.11214 1.03093 1.74239 1.18208 0.89104 0.84896 0.95367 1.21576 1.01905 0.89920 1.15082 1.18024 0.91359 0.93909 0.86211 1.19887 0.94655 0.94198 1.42501 0.89878 1.26833 0.97320 1.02526 0.91373 1.69795 1.09523 1.34752 1.30192 0.85025 0.78311 0.76609 0.78964 1.18263 1.19104 1.18600 1.21860 0.97372 0.97695 1.14979 1.21907 0.98642 0.87862 0.95705 1.67315 1.05074 1.33565 1.23927 1.21441 1.02059 0.93821 0.93256 0.88591 1.21662 0.99908 0.99631 0.98256 1.22080 0.96573 0.93108 0.94466 0.93518 0.93072 0.90880 0.89499 0.89710 0.88962 0.95553 0.89361 0.92602 0.91609 0.87998 0.91398 0.74418 0.85386 0.89785 0.86597 0.83634 0.94285 0.90482 0.94727 0.88868 0.95407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.21 71.98 0.66 -1.85 16 2 C 0.05 0.63 6.08 86.30 0.52 1.15 16 3 N -0.54 -8.55 4.86 -896.35 -4.35 -12.91 16 4 C 0.06 1.09 5.05 86.33 0.44 1.53 16 5 C -0.12 -2.46 5.41 30.65 0.17 -2.30 16 6 C 0.16 4.19 2.01 45.07 0.09 4.28 16 7 H 0.06 2.09 6.90 -2.38 -0.02 2.07 16 8 N -0.62 -17.96 2.12 -840.18 -1.78 -19.74 16 9 C 0.07 1.43 9.26 127.77 1.18 2.61 16 10 C 0.69 28.23 8.23 179.06 1.47 29.71 16 11 O -0.58 -29.16 13.96 -3.98 -0.06 -29.21 16 12 N -0.66 -27.67 5.27 -322.37 -1.70 -29.37 16 13 C 0.35 18.00 7.41 132.76 0.98 18.98 16 14 C -0.26 -13.69 8.61 23.00 0.20 -13.49 16 15 C 0.11 6.18 5.60 -21.12 -0.12 6.06 16 16 C -0.48 -25.22 9.14 23.52 0.21 -25.00 16 17 H 0.08 4.17 7.87 -2.91 -0.02 4.15 16 18 C 0.04 1.71 5.31 85.29 0.45 2.16 16 19 N -0.82 -40.11 10.70 21.84 0.23 -39.87 16 20 Si 0.99 36.16 29.57 68.60 2.03 38.19 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 24 C -0.30 -15.06 9.85 22.60 0.22 -14.83 16 25 C 0.11 5.64 11.10 84.27 0.94 6.57 16 26 N -0.58 -31.28 7.89 -194.26 -1.53 -32.81 16 27 C -0.09 -1.73 2.27 -10.74 -0.02 -1.75 16 28 H 0.10 1.67 6.57 -2.39 -0.02 1.65 16 29 C -0.14 -3.13 9.07 71.98 0.65 -2.48 16 30 C 0.07 1.14 4.12 86.32 0.36 1.50 16 31 H 0.05 0.71 6.68 -2.39 -0.02 0.70 16 32 H 0.05 0.75 6.51 -2.39 -0.02 0.74 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 37 H 0.03 0.54 6.75 -2.39 -0.02 0.52 16 38 H 0.09 1.61 7.60 -2.39 -0.02 1.59 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.50 6.37 -2.39 -0.02 1.49 16 42 H 0.07 1.35 6.30 -2.39 -0.02 1.33 16 43 H 0.42 14.50 6.39 -92.71 -0.59 13.90 16 44 H 0.13 6.70 6.12 -2.91 -0.02 6.68 16 45 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 46 H 0.12 5.38 8.06 -2.91 -0.02 5.35 16 47 H 0.15 6.36 8.06 -2.91 -0.02 6.33 16 48 H 0.04 1.04 7.68 -2.38 -0.02 1.02 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 52 H 0.03 0.56 6.61 -2.39 -0.02 0.54 16 Total: -1.00 -70.17 399.29 1.59 -68.59 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: 0.33 Total: 44.29 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 8.41 Total: 12.85 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -9.13 Total: -134.70 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -70.17 1.59 -68.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.128 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds