Wall clock time and date at job start Wed Apr 1 2020 04:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47174 * 2 1 4 4 C 1.46850 * 111.00317 * 70.54677 * 3 2 1 5 5 C 1.53034 * 109.52546 * 185.84318 * 4 3 2 6 6 C 1.53115 * 109.28016 * 300.82120 * 5 4 3 7 7 H 1.08997 * 109.52365 * 177.62402 * 6 5 4 8 8 N 1.46499 * 109.52186 * 297.75160 * 6 5 4 9 9 C 1.46502 * 120.00133 * 354.51223 * 8 6 5 10 10 C 1.34781 * 120.00081 * 174.51064 * 8 6 5 11 11 O 1.21579 * 120.00102 * 0.02562 * 10 8 6 12 12 N 1.34777 * 119.99960 * 179.97438 * 10 8 6 13 13 C 1.39461 * 119.99858 * 184.20226 * 12 10 8 14 14 C 1.38646 * 119.64785 * 185.46888 * 13 12 10 15 15 C 1.40814 * 118.67394 * 179.80021 * 14 13 12 16 16 C 1.41540 * 120.99899 * 180.21662 * 15 14 13 17 17 H 1.07998 * 120.00338 * 212.55657 * 16 15 14 18 18 C 1.40035 * 119.99981 * 32.55365 * 16 15 14 19 19 N 1.30743 * 120.00046 * 6.47567 * 18 16 15 20 20 Si 1.86798 * 120.00229 * 186.47166 * 18 16 15 21 21 H 1.48501 * 109.47168 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47398 * 119.99973 * 20 18 16 23 23 H 1.48497 * 109.47483 * 240.00445 * 20 18 16 24 24 C 1.41159 * 118.00619 * 0.46135 * 15 14 13 25 25 C 1.36591 * 119.12790 * 359.75395 * 24 15 14 26 26 N 1.32069 * 121.25800 * 0.02562 * 25 24 15 27 27 C 1.53121 * 109.15336 * 57.65885 * 6 5 4 28 28 C 1.46841 * 111.00527 * 194.75968 * 3 2 1 29 29 H 1.08998 * 109.46026 * 294.16958 * 28 3 2 30 30 C 1.53004 * 109.45998 * 54.13957 * 28 3 2 31 31 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47282 * 299.99820 * 1 2 3 33 33 H 1.08991 * 109.47270 * 60.00497 * 1 2 3 34 34 H 1.08996 * 109.47469 * 239.99655 * 2 1 3 35 35 H 1.08999 * 109.47502 * 119.99400 * 2 1 3 36 36 H 1.09006 * 109.45941 * 305.86333 * 4 3 2 37 37 H 1.08999 * 109.46153 * 65.82096 * 4 3 2 38 38 H 1.09004 * 109.50316 * 60.76533 * 5 4 3 39 39 H 1.09002 * 109.50132 * 180.83953 * 5 4 3 40 40 H 1.09000 * 109.47528 * 95.86616 * 9 8 6 41 41 H 1.08997 * 109.47313 * 215.86822 * 9 8 6 42 42 H 1.09004 * 109.46987 * 335.86752 * 9 8 6 43 43 H 0.96998 * 120.00107 * 4.19758 * 12 10 8 44 44 H 1.08002 * 120.66008 * 359.97438 * 14 13 12 45 45 H 0.96996 * 120.00120 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.44106 * 179.73638 * 24 15 14 47 47 H 1.08000 * 119.37344 * 179.97438 * 25 24 15 48 48 H 1.08994 * 109.49650 * 182.39613 * 27 6 5 49 49 H 1.08995 * 109.51033 * 62.27544 * 27 6 5 50 50 H 1.09004 * 109.46908 * 53.31634 * 30 28 3 51 51 H 1.08999 * 109.47400 * 293.31097 * 30 28 3 52 52 H 1.08997 * 109.47018 * 173.31060 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7646 2.0334 1.2927 5 6 2.1533 3.5112 1.2091 6 6 3.6360 3.6242 0.8440 7 1 3.9070 4.6750 0.7420 8 7 4.4477 3.0092 1.8972 9 6 3.8102 2.5215 3.1228 10 6 5.7810 2.8921 1.7386 11 8 6.3102 3.2972 0.7217 12 7 6.5278 2.3268 2.7077 13 6 7.9162 2.2845 2.5829 14 6 8.6691 1.6023 3.5262 15 6 10.0690 1.5691 3.3779 16 6 10.8847 0.8833 4.3094 17 1 11.8764 1.2493 4.5311 18 6 10.4060 -0.2697 4.9436 19 7 9.2593 -0.7851 4.5846 20 14 11.4057 -1.0717 6.3026 21 1 12.6557 -0.2997 6.5191 22 1 10.6115 -1.0887 7.5573 23 1 11.7445 -2.4638 5.9124 24 6 10.6350 2.2448 2.2753 25 6 9.8120 2.8943 1.3997 26 7 8.5020 2.9012 1.5671 27 6 3.8835 2.8995 -0.4819 28 6 3.4449 1.4394 -0.3492 29 1 4.0291 0.9542 0.4326 30 6 3.6720 0.7160 -1.6782 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 0.7060 1.9495 1.5384 37 1 2.3567 1.5453 2.0669 38 1 1.5517 4.0030 0.4446 39 1 1.9778 3.9887 2.1731 40 1 3.6136 1.4534 3.0299 41 1 4.4718 2.6967 3.9710 42 1 2.8706 3.0516 3.2793 43 1 6.0997 1.9494 3.4920 44 1 8.1912 1.1038 4.3567 45 1 8.9279 -1.5840 5.0236 46 1 11.7046 2.2484 2.1259 47 1 10.2408 3.4129 0.5550 48 1 4.9450 2.9399 -0.7259 49 1 3.3091 3.3815 -1.2730 50 1 2.9997 1.1237 -2.4333 51 1 3.4734 -0.3482 -1.5513 52 1 4.7047 0.8574 -1.9970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:27 Heat of formation + Delta-G solvation = 37.969191 kcal Electronic energy + Delta-G solvation = -31938.237593 eV Core-core repulsion = 27938.755943 eV Total energy + Delta-G solvation = -3999.481650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76576 -39.14854 -37.89238 -35.70699 -34.38799 -33.86819 -33.00467 -32.12195 -30.49195 -29.89464 -28.39564 -27.73986 -25.99257 -25.85690 -24.49216 -22.25409 -21.99164 -21.87998 -20.78043 -19.95364 -18.96395 -17.68332 -17.48314 -16.38125 -16.00417 -15.66326 -15.58131 -15.27677 -14.85579 -14.61482 -14.23724 -14.20646 -14.00066 -13.87377 -13.55463 -13.31260 -13.10703 -12.76436 -12.57640 -12.33842 -12.31900 -12.26993 -12.03227 -11.93771 -11.83752 -11.75150 -11.52561 -11.42159 -11.21478 -11.14752 -10.90279 -10.83325 -10.38777 -10.32683 -10.23420 -10.10820 -9.67976 -9.38740 -9.29306 -8.37162 -8.29157 -7.88904 -7.72690 -6.99892 -6.73826 -4.61253 2.69354 2.80092 2.92961 3.02942 3.08269 3.23274 3.77886 3.85369 3.88714 4.24525 4.63741 4.70054 4.73940 4.86368 4.88761 5.01742 5.10171 5.18403 5.22253 5.33593 5.34502 5.38734 5.47320 5.54274 5.58934 5.67412 5.69658 5.72367 5.76147 5.84644 5.85995 5.90230 5.96124 5.99599 6.10559 6.14235 6.23044 6.44233 6.52979 6.64790 6.76812 6.86176 6.96982 7.06134 7.11512 7.12833 7.25287 7.41830 7.49665 7.88095 8.09680 8.36457 8.47197 8.72976 8.78580 9.19118 9.71150 10.15760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002826 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.342135 B = 9903.868487 C =10666.635294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.037 3.963 5 C -0.123 4.123 6 C 0.170 3.830 7 H 0.071 0.929 8 N -0.634 5.634 9 C 0.070 3.930 10 C 0.696 3.304 11 O -0.527 6.527 12 N -0.668 5.668 13 C 0.354 3.646 14 C -0.236 4.236 15 C 0.147 3.853 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.802 5.802 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.278 4.278 25 C 0.117 3.883 26 N -0.548 5.548 27 C -0.132 4.132 28 C 0.088 3.912 29 H 0.040 0.960 30 C -0.146 4.146 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.402 0.598 44 H 0.125 0.875 45 H 0.279 0.721 46 H 0.102 0.898 47 H 0.123 0.877 48 H 0.102 0.898 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.438 1.694 -2.975 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.258 5.258 4 C -0.090 4.090 5 C -0.160 4.160 6 C 0.067 3.933 7 H 0.089 0.911 8 N -0.376 5.376 9 C -0.073 4.073 10 C 0.398 3.602 11 O -0.398 6.398 12 N -0.317 5.317 13 C 0.128 3.872 14 C -0.261 4.261 15 C 0.139 3.861 16 C -0.493 4.493 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.428 5.428 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.199 1.199 24 C -0.302 4.302 25 C -0.037 4.037 26 N -0.266 5.266 27 C -0.170 4.170 28 C -0.020 4.020 29 H 0.058 0.942 30 C -0.204 4.204 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.238 0.762 44 H 0.143 0.857 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.140 0.860 48 H 0.121 0.879 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.070 0.930 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.037 2.544 -4.681 18.807 hybrid contribution 1.062 -1.749 2.408 3.160 sum -16.974 0.795 -2.273 17.144 Atomic orbital electron populations 1.21764 0.95126 1.01136 1.02214 1.22159 0.95805 0.89445 1.01081 1.62034 1.17359 1.16231 1.30188 1.22527 1.01003 0.94571 0.90947 1.21911 0.95148 0.96669 1.02321 1.20810 0.89063 0.96577 0.86878 0.91070 1.47216 1.05481 1.65645 1.19214 1.21963 0.99365 0.98996 0.86984 1.15961 0.80371 0.79811 0.84099 1.90934 1.70046 1.51820 1.27020 1.42746 1.05119 1.61021 1.22823 1.17986 0.81630 0.94717 0.92894 1.21513 0.94828 1.07642 1.02167 1.17577 0.91264 0.87467 0.89814 1.19557 1.01455 1.08027 1.20254 0.90067 1.25902 0.94952 0.96863 0.96446 1.69755 1.18210 1.18634 1.36225 0.86172 0.80540 0.79173 0.80288 1.18422 1.19818 1.19945 1.21756 0.99347 1.10040 0.99033 1.21497 0.88442 0.96471 0.97248 1.67198 1.11747 1.24959 1.22736 1.22156 1.04397 0.93906 0.96540 1.21483 0.86953 0.96706 0.96809 0.94207 1.21903 1.02121 0.99422 0.96914 0.92660 0.92932 0.92014 0.90266 0.95227 0.90885 0.93116 0.89677 0.90864 0.92973 0.91929 0.90093 0.76204 0.85742 0.91032 0.87948 0.85975 0.87937 0.90947 0.91911 0.92954 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.94 37.16 0.37 -0.79 16 2 C 0.04 0.42 5.48 -3.83 -0.02 0.40 16 3 N -0.53 -5.80 4.46 -226.69 -1.01 -6.81 16 4 C 0.04 0.36 4.80 -3.83 -0.02 0.34 16 5 C -0.12 -1.15 5.07 -26.65 -0.14 -1.28 16 6 C 0.17 2.18 3.06 -67.81 -0.21 1.97 16 7 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 8 N -0.63 -9.11 2.36 -179.53 -0.42 -9.53 16 9 C 0.07 0.75 7.98 59.85 0.48 1.23 16 10 C 0.70 13.55 7.93 -86.91 -0.69 12.86 16 11 O -0.53 -12.18 12.36 5.30 0.07 -12.11 16 12 N -0.67 -13.48 5.23 -15.86 -0.08 -13.57 16 13 C 0.35 8.67 7.41 -154.68 -1.15 7.52 16 14 C -0.24 -6.00 8.57 -38.46 -0.33 -6.33 16 15 C 0.15 3.89 5.54 -106.56 -0.59 3.30 16 16 C -0.46 -11.91 9.11 -37.65 -0.34 -12.25 16 17 H 0.08 2.01 7.86 -52.49 -0.41 1.60 16 18 C 0.08 1.84 5.33 -17.34 -0.09 1.75 16 19 N -0.80 -20.04 10.96 55.55 0.61 -19.43 16 20 Si 0.91 18.17 29.56 -169.99 -5.03 13.14 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.28 -6.85 9.85 -39.07 -0.38 -7.24 16 25 C 0.12 2.84 11.10 -18.04 -0.20 2.64 16 26 N -0.55 -14.07 7.89 -12.76 -0.10 -14.17 16 27 C -0.13 -1.82 4.63 -26.65 -0.12 -1.94 16 28 C 0.09 1.15 2.30 -67.72 -0.16 1.00 16 29 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 30 C -0.15 -1.77 8.58 37.16 0.32 -1.45 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.40 6.60 -51.93 -0.34 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.79 5.58 -51.93 -0.29 0.50 16 35 H 0.03 0.31 8.07 -51.93 -0.42 -0.11 16 36 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 37 H 0.05 0.52 4.22 -51.93 -0.22 0.30 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 40 H 0.05 0.55 6.55 -51.93 -0.34 0.21 16 41 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 42 H 0.08 0.67 5.25 -51.93 -0.27 0.40 16 43 H 0.40 6.87 6.62 -40.82 -0.27 6.60 16 44 H 0.12 3.16 6.49 -52.49 -0.34 2.82 16 45 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 46 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 48 H 0.10 1.80 5.74 -51.93 -0.30 1.50 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.05 0.59 6.42 -51.93 -0.33 0.25 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -30.92 389.04 -11.28 -42.20 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.90 Total: 12.70 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.27 Total: 1.72 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -1.01 Total: -63.51 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.92 -11.28 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.170 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds