Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47174 * 2 1 4 4 C 1.46850 * 111.00317 * 70.54677 * 3 2 1 5 5 C 1.53034 * 109.52546 * 185.84318 * 4 3 2 6 6 C 1.53115 * 109.28016 * 300.82120 * 5 4 3 7 7 H 1.08997 * 109.52365 * 177.62402 * 6 5 4 8 8 N 1.46499 * 109.52186 * 297.75160 * 6 5 4 9 9 C 1.46502 * 120.00133 * 354.51223 * 8 6 5 10 10 C 1.34781 * 120.00081 * 174.51064 * 8 6 5 11 11 O 1.21579 * 120.00102 * 0.02562 * 10 8 6 12 12 N 1.34777 * 119.99960 * 179.97438 * 10 8 6 13 13 C 1.39461 * 119.99858 * 184.20226 * 12 10 8 14 14 C 1.38646 * 119.64785 * 185.46888 * 13 12 10 15 15 C 1.40814 * 118.67394 * 179.80021 * 14 13 12 16 16 C 1.41540 * 120.99899 * 180.21662 * 15 14 13 17 17 H 1.07998 * 120.00338 * 212.55657 * 16 15 14 18 18 C 1.40035 * 119.99981 * 32.55365 * 16 15 14 19 19 N 1.30743 * 120.00046 * 6.47567 * 18 16 15 20 20 Si 1.86798 * 120.00229 * 186.47166 * 18 16 15 21 21 H 1.48501 * 109.47168 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47398 * 119.99973 * 20 18 16 23 23 H 1.48497 * 109.47483 * 240.00445 * 20 18 16 24 24 C 1.41159 * 118.00619 * 0.46135 * 15 14 13 25 25 C 1.36591 * 119.12790 * 359.75395 * 24 15 14 26 26 N 1.32069 * 121.25800 * 0.02562 * 25 24 15 27 27 C 1.53121 * 109.15336 * 57.65885 * 6 5 4 28 28 C 1.46841 * 111.00527 * 194.75968 * 3 2 1 29 29 H 1.08998 * 109.46026 * 294.16958 * 28 3 2 30 30 C 1.53004 * 109.45998 * 54.13957 * 28 3 2 31 31 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47282 * 299.99820 * 1 2 3 33 33 H 1.08991 * 109.47270 * 60.00497 * 1 2 3 34 34 H 1.08996 * 109.47469 * 239.99655 * 2 1 3 35 35 H 1.08999 * 109.47502 * 119.99400 * 2 1 3 36 36 H 1.09006 * 109.45941 * 305.86333 * 4 3 2 37 37 H 1.08999 * 109.46153 * 65.82096 * 4 3 2 38 38 H 1.09004 * 109.50316 * 60.76533 * 5 4 3 39 39 H 1.09002 * 109.50132 * 180.83953 * 5 4 3 40 40 H 1.09000 * 109.47528 * 95.86616 * 9 8 6 41 41 H 1.08997 * 109.47313 * 215.86822 * 9 8 6 42 42 H 1.09004 * 109.46987 * 335.86752 * 9 8 6 43 43 H 0.96998 * 120.00107 * 4.19758 * 12 10 8 44 44 H 1.08002 * 120.66008 * 359.97438 * 14 13 12 45 45 H 0.96996 * 120.00120 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.44106 * 179.73638 * 24 15 14 47 47 H 1.08000 * 119.37344 * 179.97438 * 25 24 15 48 48 H 1.08994 * 109.49650 * 182.39613 * 27 6 5 49 49 H 1.08995 * 109.51033 * 62.27544 * 27 6 5 50 50 H 1.09004 * 109.46908 * 53.31634 * 30 28 3 51 51 H 1.08999 * 109.47400 * 293.31097 * 30 28 3 52 52 H 1.08997 * 109.47018 * 173.31060 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7646 2.0334 1.2927 5 6 2.1533 3.5112 1.2091 6 6 3.6360 3.6242 0.8440 7 1 3.9070 4.6750 0.7420 8 7 4.4477 3.0092 1.8972 9 6 3.8102 2.5215 3.1228 10 6 5.7810 2.8921 1.7386 11 8 6.3102 3.2972 0.7217 12 7 6.5278 2.3268 2.7077 13 6 7.9162 2.2845 2.5829 14 6 8.6691 1.6023 3.5262 15 6 10.0690 1.5691 3.3779 16 6 10.8847 0.8833 4.3094 17 1 11.8764 1.2493 4.5311 18 6 10.4060 -0.2697 4.9436 19 7 9.2593 -0.7851 4.5846 20 14 11.4057 -1.0717 6.3026 21 1 12.6557 -0.2997 6.5191 22 1 10.6115 -1.0887 7.5573 23 1 11.7445 -2.4638 5.9124 24 6 10.6350 2.2448 2.2753 25 6 9.8120 2.8943 1.3997 26 7 8.5020 2.9012 1.5671 27 6 3.8835 2.8995 -0.4819 28 6 3.4449 1.4394 -0.3492 29 1 4.0291 0.9542 0.4326 30 6 3.6720 0.7160 -1.6782 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 0.7060 1.9495 1.5384 37 1 2.3567 1.5453 2.0669 38 1 1.5517 4.0030 0.4446 39 1 1.9778 3.9887 2.1731 40 1 3.6136 1.4534 3.0299 41 1 4.4718 2.6967 3.9710 42 1 2.8706 3.0516 3.2793 43 1 6.0997 1.9494 3.4920 44 1 8.1912 1.1038 4.3567 45 1 8.9279 -1.5840 5.0236 46 1 11.7046 2.2484 2.1259 47 1 10.2408 3.4129 0.5550 48 1 4.9450 2.9399 -0.7259 49 1 3.3091 3.3815 -1.2730 50 1 2.9997 1.1237 -2.4333 51 1 3.4734 -0.3482 -1.5513 52 1 4.7047 0.8574 -1.9970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = 20.151412 kcal Electronic energy + Delta-G solvation = -31939.010230 eV Core-core repulsion = 27938.755943 eV Total energy + Delta-G solvation = -4000.254287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02561 -40.63607 -39.44518 -36.89072 -36.10660 -35.61468 -34.06086 -33.18183 -32.40824 -30.85971 -30.07450 -28.70120 -27.89893 -26.92495 -25.47954 -23.86057 -23.63642 -22.86762 -22.04361 -21.20987 -20.32860 -19.42498 -18.90040 -17.68022 -17.18960 -17.13307 -16.85606 -16.59842 -16.16109 -16.07562 -15.89412 -15.39359 -15.23991 -15.04845 -14.83973 -14.65481 -14.44118 -14.31033 -14.17002 -13.80388 -13.22581 -13.19190 -13.16079 -12.94723 -12.89900 -12.88219 -12.71509 -12.67003 -12.64563 -12.41707 -12.12309 -11.94291 -11.85710 -11.81653 -11.54882 -11.35487 -11.23355 -11.17353 -10.78976 -9.86415 -9.65268 -9.56410 -9.20331 -8.83071 -8.58766 -6.58216 0.81402 0.99318 1.40837 1.53237 1.55547 1.58278 2.21007 2.27992 2.81733 2.87126 2.95515 3.68906 3.72632 3.77958 3.90741 4.05202 4.10636 4.16523 4.23627 4.31360 4.33312 4.47588 4.49663 4.56570 4.62058 4.68041 4.72015 4.74014 4.77396 4.82333 4.83449 4.89528 4.91863 4.95613 5.04695 5.07586 5.09309 5.16473 5.17789 5.19326 5.23305 5.35139 5.42557 5.47360 5.62405 5.69901 5.85338 5.95965 6.16130 6.23363 6.24192 6.54752 6.78431 6.82670 6.88845 7.59814 7.87820 8.33119 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002826 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.342135 B = 9903.868487 C =10666.635294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 N -0.529 5.529 4 C 0.033 3.967 5 C -0.110 4.110 6 C 0.164 3.836 7 H 0.062 0.938 8 N -0.622 5.622 9 C 0.063 3.937 10 C 0.690 3.310 11 O -0.569 6.569 12 N -0.664 5.664 13 C 0.353 3.647 14 C -0.251 4.251 15 C 0.119 3.881 16 C -0.489 4.489 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.827 5.827 20 Si 0.990 3.010 21 H -0.258 1.258 22 H -0.262 1.262 23 H -0.268 1.268 24 C -0.291 4.291 25 C 0.112 3.888 26 N -0.572 5.572 27 C -0.127 4.127 28 C 0.096 3.904 29 H 0.006 0.994 30 C -0.142 4.142 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.415 0.585 44 H 0.120 0.880 45 H 0.289 0.711 46 H 0.117 0.883 47 H 0.149 0.851 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 1.250 -1.682 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 N -0.254 5.254 4 C -0.094 4.094 5 C -0.148 4.148 6 C 0.061 3.939 7 H 0.080 0.920 8 N -0.361 5.361 9 C -0.079 4.079 10 C 0.391 3.609 11 O -0.443 6.443 12 N -0.314 5.314 13 C 0.125 3.875 14 C -0.277 4.277 15 C 0.110 3.890 16 C -0.520 4.520 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.453 5.453 20 Si 0.811 3.189 21 H -0.181 1.181 22 H -0.187 1.187 23 H -0.193 1.193 24 C -0.314 4.314 25 C -0.041 4.041 26 N -0.292 5.292 27 C -0.165 4.165 28 C -0.012 4.012 29 H 0.024 0.976 30 C -0.200 4.200 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.253 0.747 44 H 0.137 0.863 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.166 0.834 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.373 2.104 -3.371 20.757 hybrid contribution 1.695 -1.621 1.947 3.048 sum -18.678 0.483 -1.424 18.739 Atomic orbital electron populations 1.21703 0.93203 1.02009 1.02520 1.22234 0.97275 0.88667 1.00578 1.62081 1.15168 1.17018 1.31168 1.22653 1.02344 0.94337 0.90054 1.21893 0.91930 0.96947 1.04041 1.21011 0.91202 0.95627 0.86045 0.91994 1.47213 1.03686 1.64483 1.20710 1.22256 1.00618 0.99793 0.85191 1.16191 0.81927 0.79475 0.83258 1.90909 1.71519 1.53445 1.28457 1.42666 1.03827 1.61203 1.23677 1.18183 0.83311 0.93801 0.92175 1.21465 0.94912 1.08679 1.02643 1.18008 0.92069 0.88163 0.90714 1.19833 1.01811 1.09093 1.21295 0.89855 1.26792 0.96010 0.96804 0.98307 1.69807 1.19448 1.19117 1.36977 0.85032 0.78875 0.77963 0.77058 1.18138 1.18667 1.19338 1.21939 1.00218 1.10323 0.98948 1.21946 0.88228 0.96139 0.97811 1.67327 1.12483 1.25920 1.23437 1.22014 1.01870 0.94926 0.97736 1.21295 0.88117 0.95711 0.96114 0.97560 1.21858 1.01178 1.00008 0.96920 0.91595 0.92156 0.92063 0.90668 0.95967 0.88503 0.93553 0.88361 0.88392 0.92392 0.91692 0.86635 0.74729 0.86267 0.90073 0.86472 0.83401 0.92197 0.89667 0.90652 0.92161 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.94 71.98 0.72 -1.09 16 2 C 0.04 0.72 5.48 86.30 0.47 1.19 16 3 N -0.53 -10.56 4.46 -871.12 -3.88 -14.44 16 4 C 0.03 0.54 4.80 86.32 0.41 0.95 16 5 C -0.11 -1.72 5.07 30.64 0.16 -1.57 16 6 C 0.16 4.08 3.06 45.07 0.14 4.21 16 7 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 8 N -0.62 -17.65 2.36 -840.17 -1.99 -19.64 16 9 C 0.06 1.24 7.98 127.77 1.02 2.26 16 10 C 0.69 27.67 7.93 179.05 1.42 29.09 16 11 O -0.57 -27.55 12.36 -3.96 -0.05 -27.60 16 12 N -0.66 -27.57 5.23 -322.36 -1.69 -29.26 16 13 C 0.35 17.88 7.41 132.76 0.98 18.87 16 14 C -0.25 -13.23 8.57 23.00 0.20 -13.03 16 15 C 0.12 6.46 5.54 -21.12 -0.12 6.34 16 16 C -0.49 -25.67 9.11 23.52 0.21 -25.46 16 17 H 0.08 4.19 7.86 -2.91 -0.02 4.17 16 18 C 0.04 1.75 5.33 85.29 0.45 2.20 16 19 N -0.83 -41.61 10.96 21.84 0.24 -41.37 16 20 Si 0.99 36.70 29.56 68.60 2.03 38.73 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.29 -14.69 9.85 22.60 0.22 -14.47 16 25 C 0.11 5.55 11.10 84.27 0.94 6.49 16 26 N -0.57 -30.40 7.89 -194.27 -1.53 -31.93 16 27 C -0.13 -3.57 4.63 30.65 0.14 -3.43 16 28 C 0.10 2.52 2.30 44.94 0.10 2.62 16 29 H 0.01 0.21 7.68 -2.39 -0.02 0.19 16 30 C -0.14 -3.51 8.58 71.98 0.62 -2.89 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.71 6.60 -2.38 -0.02 0.69 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.40 5.58 -2.39 -0.01 1.39 16 35 H 0.02 0.43 8.07 -2.39 -0.02 0.41 16 36 H 0.10 1.19 6.43 -2.38 -0.02 1.17 16 37 H 0.05 0.82 4.22 -2.39 -0.01 0.81 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.10 1.10 6.54 -2.39 -0.02 1.08 16 40 H 0.06 1.12 6.55 -2.39 -0.02 1.11 16 41 H 0.06 1.27 6.75 -2.39 -0.02 1.26 16 42 H 0.12 1.48 5.25 -2.38 -0.01 1.47 16 43 H 0.41 14.45 6.62 -92.71 -0.61 13.83 16 44 H 0.12 6.27 6.49 -2.91 -0.02 6.25 16 45 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 46 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 47 H 0.15 6.33 8.06 -2.91 -0.02 6.31 16 48 H 0.06 2.24 5.74 -2.39 -0.01 2.23 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.06 1.36 6.42 -2.39 -0.02 1.35 16 52 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.08 389.04 1.55 -68.53 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: 0.33 Total: 44.69 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 8.09 Total: 12.29 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -8.85 Total: -136.64 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -70.08 1.55 -68.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.678 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds