Wall clock time and date at job start Wed Apr 1 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47466 * 2 1 4 4 C 1.46847 * 110.99920 * 289.39240 * 3 2 1 5 5 C 1.53035 * 109.52643 * 174.16041 * 4 3 2 6 6 C 1.53126 * 109.27635 * 59.17710 * 5 4 3 7 7 H 1.08999 * 109.51932 * 62.25500 * 6 5 4 8 8 N 1.46503 * 109.52073 * 182.44008 * 6 5 4 9 9 C 1.46504 * 119.99552 * 59.68883 * 8 6 5 10 10 C 1.34770 * 120.00328 * 239.68317 * 8 6 5 11 11 O 1.21583 * 119.99776 * 0.02562 * 10 8 6 12 12 N 1.34781 * 120.00374 * 180.02562 * 10 8 6 13 13 C 1.39244 * 120.00097 * 185.47779 * 12 10 8 14 14 C 1.39684 * 119.57456 * 174.51913 * 13 12 10 15 15 C 1.38647 * 119.49519 * 179.97438 * 14 13 12 16 16 C 1.38350 * 118.67131 * 0.02562 * 15 14 13 17 17 C 1.40575 * 119.13271 * 359.97438 * 16 15 14 18 18 C 1.41333 * 119.78928 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00289 * 359.97438 * 18 17 16 20 20 C 1.40031 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.30734 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47401 * 90.00009 * 22 20 18 24 24 H 1.48498 * 109.46902 * 210.00008 * 22 20 18 25 25 H 1.48505 * 109.47347 * 329.99909 * 22 20 18 26 26 N 1.31901 * 119.57474 * 354.24108 * 13 12 10 27 27 C 1.53118 * 109.16348 * 302.34976 * 6 5 4 28 28 C 1.46843 * 111.00237 * 165.18569 * 3 2 1 29 29 H 1.08998 * 109.46715 * 65.83129 * 28 3 2 30 30 C 1.53009 * 109.46138 * 305.85441 * 28 3 2 31 31 H 1.08993 * 109.47507 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46854 * 300.00885 * 1 2 3 33 33 H 1.09007 * 109.46727 * 59.99898 * 1 2 3 34 34 H 1.08998 * 109.46863 * 120.00349 * 2 1 3 35 35 H 1.09004 * 109.47254 * 239.99922 * 2 1 3 36 36 H 1.09000 * 109.46588 * 294.17794 * 4 3 2 37 37 H 1.09002 * 109.46150 * 54.14550 * 4 3 2 38 38 H 1.09002 * 109.50210 * 299.24043 * 5 4 3 39 39 H 1.08998 * 109.53820 * 179.13999 * 5 4 3 40 40 H 1.08999 * 109.47406 * 90.00091 * 9 8 6 41 41 H 1.09005 * 109.46787 * 209.99355 * 9 8 6 42 42 H 1.08997 * 109.47300 * 329.99465 * 9 8 6 43 43 H 0.96995 * 119.99768 * 5.46832 * 12 10 8 44 44 H 1.07997 * 120.25444 * 359.95172 * 14 13 12 45 45 H 1.07996 * 120.66276 * 179.97438 * 15 14 13 46 46 H 1.08005 * 120.43513 * 180.02562 * 16 15 14 47 47 H 0.97005 * 119.99917 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.49979 * 297.71157 * 27 6 5 49 49 H 1.08994 * 109.53530 * 177.61610 * 27 6 5 50 50 H 1.09000 * 109.46869 * 66.22482 * 30 28 3 51 51 H 1.09003 * 109.47024 * 186.22889 * 30 28 3 52 52 H 1.09001 * 109.46875 * 306.22447 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7660 2.0328 -1.2932 5 6 2.1547 3.5106 -1.2099 6 6 3.6372 3.6236 -0.8434 7 1 4.2418 3.1657 -1.6262 8 7 4.0011 5.0359 -0.7051 9 6 3.3215 5.8736 0.2863 10 6 4.9609 5.5645 -1.4897 11 8 5.5245 4.8693 -2.3126 12 7 5.2960 6.8637 -1.3621 13 6 6.2045 7.4386 -2.2471 14 6 6.4586 8.8104 -2.1798 15 6 7.3639 9.3810 -3.0614 16 6 7.9915 8.5671 -3.9876 17 6 7.6931 7.1935 -4.0050 18 6 8.3266 6.3493 -4.9449 19 1 9.0370 6.7600 -5.6471 20 6 8.0331 4.9802 -4.9658 21 7 7.1735 4.4829 -4.1155 22 14 8.8698 3.8645 -6.2086 23 1 10.1287 3.3326 -5.6277 24 1 7.9659 2.7363 -6.5483 25 1 9.1799 4.6377 -7.4380 26 7 6.8181 6.6797 -3.1344 27 6 3.8836 2.8993 0.4830 28 6 3.4447 1.4393 0.3505 29 1 4.0297 0.9538 -0.4306 30 6 3.6706 0.7164 1.6801 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 2.3588 1.5445 -2.0666 37 1 0.7076 1.9490 -1.5399 38 1 1.5525 4.0028 -0.4461 39 1 1.9808 3.9882 -2.1741 40 1 3.8630 5.8301 1.2313 41 1 3.2916 6.9041 -0.0681 42 1 2.3045 5.5103 0.4332 43 1 4.9043 7.3983 -0.6539 44 1 5.9536 9.4221 -1.4469 45 1 7.5743 10.4397 -3.0264 46 1 8.7020 8.9816 -4.6876 47 1 6.9704 3.5345 -4.1298 48 1 3.3086 3.3819 1.2734 49 1 4.9448 2.9396 0.7285 50 1 3.4639 -0.3465 1.5554 51 1 4.7052 0.8510 1.9956 52 1 3.0034 1.1300 2.4363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:54 Heat of formation + Delta-G solvation = 44.945974 kcal Electronic energy + Delta-G solvation = -31757.353467 eV Core-core repulsion = 27758.174353 eV Total energy + Delta-G solvation = -3999.179114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.15045 -39.09174 -37.71233 -35.51342 -34.06877 -33.24304 -32.89651 -32.29339 -30.24619 -29.62443 -28.61509 -27.18359 -26.49727 -25.50256 -24.27116 -22.24936 -21.98909 -21.30279 -20.66488 -19.65383 -18.80174 -18.02131 -16.84025 -16.40317 -16.05555 -15.62863 -15.07393 -15.04852 -14.58893 -14.46457 -14.36218 -14.25160 -13.77177 -13.65549 -13.41452 -13.03345 -12.85052 -12.78741 -12.52649 -12.25800 -12.11012 -12.04720 -11.96030 -11.94057 -11.85890 -11.81520 -11.26360 -11.13284 -11.04539 -10.91457 -10.81401 -10.60557 -10.42117 -10.40613 -10.32499 -9.88631 -9.64106 -9.01163 -8.97897 -8.43352 -8.07456 -7.90123 -7.15967 -6.89040 -6.06546 -4.34500 2.88272 3.15285 3.17969 3.19685 3.22167 3.31069 3.71068 4.10255 4.21113 4.48668 4.70623 4.74776 4.82578 4.97529 5.01359 5.05472 5.17683 5.22727 5.27772 5.33820 5.38897 5.43970 5.54734 5.58311 5.61141 5.62372 5.70992 5.75991 5.82604 5.86435 5.94818 6.01805 6.02561 6.08725 6.11393 6.15271 6.25293 6.37308 6.52516 6.63075 6.84832 6.89705 6.97089 7.02301 7.07630 7.26616 7.42558 7.66619 7.77999 7.86178 8.21264 8.32937 8.67997 8.83947 9.11059 9.63284 10.32183 10.54190 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003223 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.861978 B = 8684.570298 C =10334.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.534 5.534 4 C 0.058 3.942 5 C -0.124 4.124 6 C 0.162 3.838 7 H 0.101 0.899 8 N -0.638 5.638 9 C 0.081 3.919 10 C 0.667 3.333 11 O -0.461 6.461 12 N -0.672 5.672 13 C 0.386 3.614 14 C -0.358 4.358 15 C -0.036 4.036 16 C -0.307 4.307 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.081 0.919 20 C 0.057 3.943 21 N -0.648 5.648 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 N -0.471 5.471 27 C -0.116 4.116 28 C 0.083 3.917 29 H 0.043 0.957 30 C -0.146 4.146 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.271 0.729 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 -7.487 11.313 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.259 5.259 4 C -0.070 4.070 5 C -0.163 4.163 6 C 0.057 3.943 7 H 0.119 0.881 8 N -0.379 5.379 9 C -0.063 4.063 10 C 0.367 3.633 11 O -0.325 6.325 12 N -0.322 5.322 13 C 0.146 3.854 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.266 5.266 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.189 5.189 27 C -0.155 4.155 28 C -0.025 4.025 29 H 0.061 0.939 30 C -0.203 4.203 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.896 -8.912 11.029 19.167 hybrid contribution 0.646 0.430 -0.600 0.980 sum -12.250 -8.482 10.429 18.188 Atomic orbital electron populations 1.21775 0.95050 1.01174 1.02410 1.22174 0.95996 0.89297 1.01028 1.62038 1.16827 1.16386 1.30692 1.22067 1.00971 0.94483 0.89502 1.21945 0.96572 0.95540 1.02210 1.20787 0.95035 0.80599 0.97845 0.88148 1.47244 1.40559 1.10113 1.40011 1.21580 0.97716 0.94904 0.92116 1.16397 0.81149 0.82878 0.82886 1.91366 1.50667 1.57372 1.33119 1.42717 1.45853 1.10159 1.33459 1.18371 0.89119 0.87848 0.90022 1.20431 1.13783 0.93664 1.10572 1.20535 0.94383 0.97117 0.93955 1.21615 1.09638 0.95840 1.05960 1.18398 0.88271 0.88936 0.89803 1.19561 1.20502 0.92017 1.13525 0.90043 1.26183 0.95477 0.99128 0.96445 1.70354 1.18543 1.13060 1.24672 0.86564 0.79798 0.80166 0.81701 1.19716 1.20416 1.18788 1.68703 1.10956 1.33559 1.05723 1.21973 1.01376 0.93909 0.98261 1.21560 0.87752 0.96184 0.97027 0.93908 1.21916 1.01936 0.99640 0.96857 0.92622 0.91971 0.92773 0.90265 0.95040 0.94627 0.90483 0.91101 0.91129 0.93542 0.92043 0.91315 0.77069 0.89248 0.88673 0.88639 0.91761 0.91125 0.91195 0.92661 0.92013 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.94 37.16 0.37 -0.75 16 2 C 0.04 0.38 5.48 -3.83 -0.02 0.36 16 3 N -0.53 -5.54 4.46 -226.69 -1.01 -6.55 16 4 C 0.06 0.64 5.30 -3.84 -0.02 0.62 16 5 C -0.12 -1.51 5.40 -26.65 -0.14 -1.66 16 6 C 0.16 2.34 2.59 -67.80 -0.18 2.17 16 7 H 0.10 1.81 6.91 -51.93 -0.36 1.46 16 8 N -0.64 -10.05 2.77 -179.52 -0.50 -10.55 16 9 C 0.08 0.93 9.17 59.85 0.55 1.48 16 10 C 0.67 14.14 8.24 -86.92 -0.72 13.42 16 11 O -0.46 -11.96 11.44 5.29 0.06 -11.90 16 12 N -0.67 -13.87 5.21 -15.79 -0.08 -13.96 16 13 C 0.39 9.68 7.43 -155.00 -1.15 8.53 16 14 C -0.36 -8.24 9.96 -38.89 -0.39 -8.62 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 17 C 0.27 7.77 6.55 -84.99 -0.56 7.21 16 18 C -0.43 -11.92 9.14 -37.73 -0.34 -12.26 16 19 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 20 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 21 N -0.65 -18.27 8.98 55.55 0.50 -17.78 16 22 Si 0.89 19.58 29.56 -169.99 -5.02 14.56 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 26 N -0.47 -13.51 5.74 -10.26 -0.06 -13.57 16 27 C -0.12 -1.42 4.69 -26.65 -0.13 -1.55 16 28 C 0.08 0.92 2.44 -67.72 -0.17 0.75 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 C -0.15 -1.32 8.60 37.16 0.32 -1.00 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.43 6.60 -51.93 -0.34 0.08 16 34 H 0.08 0.64 5.57 -51.93 -0.29 0.36 16 35 H 0.03 0.29 8.07 -51.93 -0.42 -0.13 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.76 6.43 -51.93 -0.33 0.42 16 38 H 0.07 0.80 6.57 -51.93 -0.34 0.46 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.67 6.45 -51.93 -0.33 0.33 16 42 H 0.07 0.67 6.37 -51.93 -0.33 0.34 16 43 H 0.39 6.46 6.51 -40.82 -0.27 6.19 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 46 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 47 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 48 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.05 0.45 6.39 -51.93 -0.33 0.12 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -32.80 396.95 -11.94 -44.74 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.36 Total: 8.37 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -3.44 Total: 0.64 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -1.15 Total: -62.40 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.06 Total: -11.90 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.80 -11.94 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.688 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds