Wall clock time and date at job start Wed Apr 1 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47466 * 2 1 4 4 C 1.46847 * 110.99920 * 289.39240 * 3 2 1 5 5 C 1.53035 * 109.52643 * 174.16041 * 4 3 2 6 6 C 1.53126 * 109.27635 * 59.17710 * 5 4 3 7 7 H 1.08999 * 109.51932 * 62.25500 * 6 5 4 8 8 N 1.46503 * 109.52073 * 182.44008 * 6 5 4 9 9 C 1.46504 * 119.99552 * 59.68883 * 8 6 5 10 10 C 1.34770 * 120.00328 * 239.68317 * 8 6 5 11 11 O 1.21583 * 119.99776 * 0.02562 * 10 8 6 12 12 N 1.34781 * 120.00374 * 180.02562 * 10 8 6 13 13 C 1.39244 * 120.00097 * 185.47779 * 12 10 8 14 14 C 1.39684 * 119.57456 * 174.51913 * 13 12 10 15 15 C 1.38647 * 119.49519 * 179.97438 * 14 13 12 16 16 C 1.38350 * 118.67131 * 0.02562 * 15 14 13 17 17 C 1.40575 * 119.13271 * 359.97438 * 16 15 14 18 18 C 1.41333 * 119.78928 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00289 * 359.97438 * 18 17 16 20 20 C 1.40031 * 119.99835 * 179.97438 * 18 17 16 21 21 N 1.30734 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47401 * 90.00009 * 22 20 18 24 24 H 1.48498 * 109.46902 * 210.00008 * 22 20 18 25 25 H 1.48505 * 109.47347 * 329.99909 * 22 20 18 26 26 N 1.31901 * 119.57474 * 354.24108 * 13 12 10 27 27 C 1.53118 * 109.16348 * 302.34976 * 6 5 4 28 28 C 1.46843 * 111.00237 * 165.18569 * 3 2 1 29 29 H 1.08998 * 109.46715 * 65.83129 * 28 3 2 30 30 C 1.53009 * 109.46138 * 305.85441 * 28 3 2 31 31 H 1.08993 * 109.47507 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46854 * 300.00885 * 1 2 3 33 33 H 1.09007 * 109.46727 * 59.99898 * 1 2 3 34 34 H 1.08998 * 109.46863 * 120.00349 * 2 1 3 35 35 H 1.09004 * 109.47254 * 239.99922 * 2 1 3 36 36 H 1.09000 * 109.46588 * 294.17794 * 4 3 2 37 37 H 1.09002 * 109.46150 * 54.14550 * 4 3 2 38 38 H 1.09002 * 109.50210 * 299.24043 * 5 4 3 39 39 H 1.08998 * 109.53820 * 179.13999 * 5 4 3 40 40 H 1.08999 * 109.47406 * 90.00091 * 9 8 6 41 41 H 1.09005 * 109.46787 * 209.99355 * 9 8 6 42 42 H 1.08997 * 109.47300 * 329.99465 * 9 8 6 43 43 H 0.96995 * 119.99768 * 5.46832 * 12 10 8 44 44 H 1.07997 * 120.25444 * 359.95172 * 14 13 12 45 45 H 1.07996 * 120.66276 * 179.97438 * 15 14 13 46 46 H 1.08005 * 120.43513 * 180.02562 * 16 15 14 47 47 H 0.97005 * 119.99917 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.49979 * 297.71157 * 27 6 5 49 49 H 1.08994 * 109.53530 * 177.61610 * 27 6 5 50 50 H 1.09000 * 109.46869 * 66.22482 * 30 28 3 51 51 H 1.09003 * 109.47024 * 186.22889 * 30 28 3 52 52 H 1.09001 * 109.46875 * 306.22447 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7660 2.0328 -1.2932 5 6 2.1547 3.5106 -1.2099 6 6 3.6372 3.6236 -0.8434 7 1 4.2418 3.1657 -1.6262 8 7 4.0011 5.0359 -0.7051 9 6 3.3215 5.8736 0.2863 10 6 4.9609 5.5645 -1.4897 11 8 5.5245 4.8693 -2.3126 12 7 5.2960 6.8637 -1.3621 13 6 6.2045 7.4386 -2.2471 14 6 6.4586 8.8104 -2.1798 15 6 7.3639 9.3810 -3.0614 16 6 7.9915 8.5671 -3.9876 17 6 7.6931 7.1935 -4.0050 18 6 8.3266 6.3493 -4.9449 19 1 9.0370 6.7600 -5.6471 20 6 8.0331 4.9802 -4.9658 21 7 7.1735 4.4829 -4.1155 22 14 8.8698 3.8645 -6.2086 23 1 10.1287 3.3326 -5.6277 24 1 7.9659 2.7363 -6.5483 25 1 9.1799 4.6377 -7.4380 26 7 6.8181 6.6797 -3.1344 27 6 3.8836 2.8993 0.4830 28 6 3.4447 1.4393 0.3505 29 1 4.0297 0.9538 -0.4306 30 6 3.6706 0.7164 1.6801 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 2.3588 1.5445 -2.0666 37 1 0.7076 1.9490 -1.5399 38 1 1.5525 4.0028 -0.4461 39 1 1.9808 3.9882 -2.1741 40 1 3.8630 5.8301 1.2313 41 1 3.2916 6.9041 -0.0681 42 1 2.3045 5.5103 0.4332 43 1 4.9043 7.3983 -0.6539 44 1 5.9536 9.4221 -1.4469 45 1 7.5743 10.4397 -3.0264 46 1 8.7020 8.9816 -4.6876 47 1 6.9704 3.5345 -4.1298 48 1 3.3086 3.3819 1.2734 49 1 4.9448 2.9396 0.7285 50 1 3.4639 -0.3465 1.5554 51 1 4.7052 0.8510 1.9956 52 1 3.0034 1.1300 2.4363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:53 Heat of formation + Delta-G solvation = 25.419449 kcal Electronic energy + Delta-G solvation = -31758.200201 eV Core-core repulsion = 27758.174353 eV Total energy + Delta-G solvation = -4000.025848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50952 -40.42614 -39.39685 -36.82021 -35.90233 -34.94502 -33.96539 -33.37077 -32.19152 -30.97094 -30.03293 -28.06919 -27.65992 -27.37053 -25.37827 -23.79915 -23.15199 -22.86351 -21.94488 -20.78470 -20.23803 -19.73997 -18.52332 -17.96584 -17.14761 -16.71454 -16.50567 -16.28972 -16.27628 -16.10634 -15.62387 -15.34360 -15.21796 -14.77392 -14.72132 -14.54229 -14.37403 -14.08303 -13.72723 -13.66494 -13.35477 -13.04915 -13.00448 -12.89511 -12.85504 -12.80074 -12.72282 -12.61700 -12.54986 -12.30011 -12.13271 -11.97455 -11.76939 -11.76441 -11.51808 -11.40747 -11.26379 -10.86494 -10.75395 -9.88563 -9.40756 -9.32235 -9.09162 -8.76372 -8.01761 -6.40720 0.97048 1.29111 1.37364 1.49747 1.52506 1.73796 2.25626 2.54880 2.85614 3.03695 3.09059 3.72340 3.82387 3.91554 4.05837 4.08628 4.24119 4.25490 4.33185 4.35663 4.42042 4.46032 4.50268 4.56905 4.65370 4.69029 4.71187 4.76029 4.81371 4.84788 4.86438 4.87649 4.96960 4.97575 5.04320 5.07766 5.08629 5.17514 5.19998 5.22662 5.29820 5.36311 5.43049 5.65062 5.77427 5.86993 5.94335 6.05093 6.11999 6.16568 6.27053 6.41669 6.82734 7.06884 7.16542 8.00327 8.39086 8.58495 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003223 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.861978 B = 8684.570298 C =10334.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 N -0.528 5.528 4 C 0.061 3.939 5 C -0.112 4.112 6 C 0.161 3.839 7 H 0.053 0.947 8 N -0.629 5.629 9 C 0.074 3.926 10 C 0.657 3.343 11 O -0.516 6.516 12 N -0.661 5.661 13 C 0.363 3.637 14 C -0.346 4.346 15 C -0.033 4.033 16 C -0.331 4.331 17 C 0.236 3.764 18 C -0.466 4.466 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.684 5.684 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.254 1.254 26 N -0.507 5.507 27 C -0.104 4.104 28 C 0.084 3.916 29 H 0.020 0.980 30 C -0.139 4.139 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.023 0.977 36 H 0.015 0.985 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.415 0.585 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.104 0.896 47 H 0.266 0.734 48 H 0.090 0.910 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.591 -6.970 13.375 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 N -0.254 5.254 4 C -0.067 4.067 5 C -0.151 4.151 6 C 0.057 3.943 7 H 0.071 0.929 8 N -0.369 5.369 9 C -0.068 4.068 10 C 0.357 3.643 11 O -0.384 6.384 12 N -0.312 5.312 13 C 0.123 3.877 14 C -0.371 4.371 15 C -0.057 4.057 16 C -0.354 4.354 17 C 0.110 3.890 18 C -0.497 4.497 19 H 0.104 0.896 20 C -0.216 4.216 21 N -0.303 5.303 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.178 1.178 26 N -0.226 5.226 27 C -0.143 4.143 28 C -0.025 4.025 29 H 0.038 0.962 30 C -0.196 4.196 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.254 0.746 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.123 0.877 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.744 -8.364 13.165 21.463 hybrid contribution 1.109 0.397 -1.108 1.617 sum -13.635 -7.967 12.058 19.869 Atomic orbital electron populations 1.21739 0.93724 1.02123 1.02293 1.22287 0.97036 0.88207 1.01235 1.62102 1.16008 1.17472 1.29779 1.22036 1.01611 0.93519 0.89547 1.21833 0.94852 0.96563 1.01838 1.20827 0.95739 0.79909 0.97867 0.92899 1.47204 1.39174 1.10887 1.39650 1.21888 0.98795 0.94679 0.91428 1.16716 0.81760 0.82755 0.83047 1.91354 1.52847 1.58584 1.35632 1.42560 1.45060 1.10333 1.33290 1.18890 0.89572 0.89048 0.90174 1.20909 1.12669 0.93088 1.10444 1.21020 0.93163 0.98995 0.92527 1.21804 1.10823 0.95267 1.07474 1.18905 0.88975 0.90601 0.90474 1.19883 1.21913 0.93203 1.14701 0.89631 1.27045 0.95901 1.00269 0.98348 1.70580 1.20222 1.12876 1.26626 0.85371 0.78519 0.77752 0.79051 1.19034 1.20087 1.17783 1.68666 1.11795 1.35305 1.06815 1.21849 1.00640 0.94691 0.97086 1.21545 0.88016 0.95294 0.97694 0.96246 1.21860 1.02190 1.00085 0.95495 0.91227 0.91763 0.93110 0.89112 0.95819 0.96631 0.88651 0.88992 0.92842 0.91748 0.91130 0.88790 0.74633 0.85080 0.84383 0.87742 0.92299 0.89196 0.92956 0.91503 0.92047 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.94 71.98 0.72 -1.11 16 2 C 0.04 0.64 5.48 86.30 0.47 1.11 16 3 N -0.53 -10.28 4.46 -871.12 -3.88 -14.16 16 4 C 0.06 1.33 5.30 86.32 0.46 1.79 16 5 C -0.11 -2.70 5.40 30.65 0.17 -2.54 16 6 C 0.16 4.81 2.59 45.07 0.12 4.93 16 7 H 0.05 2.11 6.91 -2.39 -0.02 2.09 16 8 N -0.63 -19.84 2.77 -840.15 -2.33 -22.17 16 9 C 0.07 1.51 9.17 127.77 1.17 2.68 16 10 C 0.66 28.77 8.24 179.06 1.48 30.25 16 11 O -0.52 -28.59 11.44 -3.98 -0.05 -28.63 16 12 N -0.66 -27.18 5.21 -322.12 -1.68 -28.86 16 13 C 0.36 18.32 7.43 133.26 0.99 19.31 16 14 C -0.35 -15.17 9.96 22.72 0.23 -14.95 16 15 C -0.03 -1.46 10.15 22.39 0.23 -1.24 16 16 C -0.33 -17.16 9.83 22.87 0.22 -16.93 16 17 C 0.24 14.09 6.55 40.19 0.26 14.35 16 18 C -0.47 -27.39 9.14 23.47 0.21 -27.18 16 19 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 20 C 0.01 0.56 5.50 85.29 0.47 1.03 16 21 N -0.68 -41.11 8.98 21.84 0.20 -40.91 16 22 Si 0.97 42.18 29.56 68.60 2.03 44.21 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 26 N -0.51 -30.26 5.74 -186.37 -1.07 -31.33 16 27 C -0.10 -2.51 4.69 30.65 0.14 -2.37 16 28 C 0.08 1.81 2.44 44.94 0.11 1.92 16 29 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 30 C -0.14 -2.28 8.60 71.99 0.62 -1.67 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.69 6.60 -2.38 -0.02 0.68 16 34 H 0.09 1.27 5.57 -2.39 -0.01 1.25 16 35 H 0.02 0.42 8.07 -2.38 -0.02 0.40 16 36 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.10 1.74 6.43 -2.39 -0.02 1.73 16 38 H 0.09 1.84 6.57 -2.39 -0.02 1.82 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.33 6.45 -2.38 -0.02 1.31 16 42 H 0.09 1.48 6.37 -2.39 -0.02 1.46 16 43 H 0.41 12.83 6.51 -92.71 -0.60 12.23 16 44 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 46 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 47 H 0.27 15.23 8.29 -92.70 -0.77 14.46 16 48 H 0.09 1.84 7.60 -2.39 -0.02 1.82 16 49 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 0.95 6.39 -2.39 -0.02 0.94 16 51 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.43 396.95 1.61 -75.82 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.32 Total: 36.64 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 8.06 Total: 9.40 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -8.76 Total: -137.44 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -77.43 1.61 -75.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.239 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds