Wall clock time and date at job start Wed Apr 1 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46801 * 2 1 4 4 N 1.28442 * 125.18776 * 90.04996 * 3 2 1 5 5 C 1.30863 * 110.92425 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.06972 * 179.97438 * 5 4 3 7 7 C 1.53005 * 117.51856 * 196.30631 * 6 5 4 8 8 C 1.52997 * 117.49917 * 264.93613 * 6 5 4 9 9 C 1.39675 * 107.86416 * 0.25822 * 5 4 3 10 10 C 1.36590 * 125.18886 * 270.04010 * 3 2 1 11 11 C 1.47170 * 126.88684 * 0.02562 * 10 3 2 12 12 O 1.21630 * 119.99779 * 4.79787 * 11 10 3 13 13 N 1.34775 * 120.00239 * 184.79507 * 11 10 3 14 14 C 1.46496 * 119.99892 * 184.23097 * 13 11 10 15 15 C 1.52997 * 109.47020 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.49855 * 305.06473 * 15 14 13 17 17 C 1.53046 * 109.49985 * 185.00138 * 15 14 13 18 18 C 1.53038 * 109.54115 * 178.68167 * 17 15 14 19 19 C 1.53196 * 109.31305 * 61.36174 * 18 17 15 20 20 N 1.46925 * 108.77499 * 305.36923 * 19 18 17 21 21 C 1.36935 * 120.62681 * 233.58320 * 20 19 18 22 22 H 1.08004 * 119.99955 * 143.26110 * 21 20 19 23 23 C 1.38813 * 120.00253 * 323.25351 * 21 20 19 24 24 N 1.31620 * 120.00217 * 348.08010 * 23 21 20 25 25 Si 1.86804 * 120.00106 * 168.07301 * 23 21 20 26 26 H 1.48497 * 109.47057 * 60.00372 * 25 23 21 27 27 H 1.48496 * 109.47140 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47078 * 300.00514 * 25 23 21 29 29 C 1.46917 * 118.74115 * 53.60709 * 20 19 18 30 30 H 1.09003 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47605 * 300.00310 * 1 2 3 32 32 H 1.08998 * 109.47124 * 60.00208 * 1 2 3 33 33 H 1.08991 * 109.47297 * 239.99855 * 2 1 3 34 34 H 1.09003 * 109.46788 * 120.00126 * 2 1 3 35 35 H 1.08997 * 115.55098 * 50.60434 * 6 5 4 36 36 H 1.08996 * 117.50078 * 214.97056 * 7 6 5 37 37 H 1.09000 * 117.49621 * 359.97438 * 7 6 5 38 38 H 1.09003 * 117.49874 * 359.97255 * 8 6 5 39 39 H 1.08997 * 117.50387 * 144.99586 * 8 6 5 40 40 H 1.07998 * 127.32335 * 179.74040 * 9 5 4 41 41 H 0.97003 * 120.00127 * 4.23720 * 13 11 10 42 42 H 1.09000 * 109.47230 * 299.99973 * 14 13 11 43 43 H 1.08999 * 109.47063 * 60.00638 * 14 13 11 44 44 H 1.09000 * 109.45630 * 298.70572 * 17 15 14 45 45 H 1.09007 * 109.45881 * 58.67365 * 17 15 14 46 46 H 1.08996 * 109.49773 * 181.31397 * 18 17 15 47 47 H 1.09004 * 109.49669 * 301.38320 * 18 17 15 48 48 H 1.08998 * 109.58589 * 65.15235 * 19 18 17 49 49 H 1.08998 * 109.58465 * 185.57885 * 19 18 17 50 50 H 0.96996 * 120.00190 * 179.97438 * 24 23 21 51 51 H 1.09002 * 109.59114 * 186.60531 * 29 20 19 52 52 H 1.09000 * 109.59093 * 66.17682 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2658 2.0788 1.0497 5 6 2.6887 3.2745 0.7273 6 6 3.0758 4.3681 1.6892 7 6 3.1753 5.7919 1.1381 8 6 2.0083 5.4036 2.0482 9 6 2.7116 3.3595 -0.6667 10 6 2.2799 2.1237 -1.1163 11 6 2.1275 1.6971 -2.5166 12 8 1.6485 0.6087 -2.7720 13 7 2.5186 2.5126 -3.5158 14 6 2.2824 2.1284 -4.9096 15 6 2.8183 3.2206 -5.8374 16 1 2.3721 4.1780 -5.5682 17 6 2.4617 2.8803 -7.2864 18 6 2.9687 3.9886 -8.2121 19 6 4.4934 4.0850 -8.0992 20 7 4.8524 4.2676 -6.6862 21 6 5.6486 5.3119 -6.2981 22 1 5.4635 5.8121 -5.3590 23 6 6.6939 5.7275 -7.1116 24 7 7.0700 4.9846 -8.1309 25 14 7.5665 7.3413 -6.7598 26 1 8.1657 7.2942 -5.4019 27 1 8.6370 7.5549 -7.7665 28 1 6.5901 8.4579 -6.8315 29 6 4.3413 3.3083 -5.6978 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.7802 4.0801 2.4696 36 1 3.9451 6.4407 1.5558 37 1 2.9612 5.9378 0.0793 38 1 1.0262 5.2943 1.5882 39 1 2.0104 5.7970 3.0647 40 1 3.0057 4.2082 -1.2662 41 1 2.9565 3.3538 -3.3121 42 1 2.7952 1.1898 -5.1197 43 1 1.2124 2.0030 -5.0756 44 1 2.9282 1.9347 -7.5626 45 1 1.3795 2.7933 -7.3832 46 1 2.6940 3.7570 -9.2411 47 1 2.5211 4.9389 -7.9209 48 1 4.9464 3.1679 -8.4757 49 1 4.8496 4.9360 -8.6797 50 1 7.8001 5.2752 -8.6995 51 1 4.5972 3.6468 -4.6937 52 1 4.7818 2.3278 -5.8784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895411784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:41 Heat of formation + Delta-G solvation = 54.460142 kcal Electronic energy + Delta-G solvation = -30755.320677 eV Core-core repulsion = 26756.554128 eV Total energy + Delta-G solvation = -3998.766549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.66088 -40.67238 -39.27832 -38.13598 -36.36237 -35.23679 -34.63275 -32.66491 -32.23665 -31.32940 -30.67791 -27.29324 -26.98093 -25.52278 -24.59817 -23.80540 -23.24604 -23.11801 -22.32624 -21.52773 -20.88809 -20.19293 -18.92182 -18.53765 -17.42342 -17.14842 -16.87401 -16.79876 -16.32888 -16.13932 -15.73066 -15.59053 -15.34517 -15.17780 -15.06509 -14.99393 -14.52197 -14.27744 -13.98598 -13.76258 -13.63784 -13.56767 -13.12161 -12.97305 -12.87032 -12.80429 -12.51478 -12.34945 -12.32819 -12.27973 -12.05496 -12.00208 -11.81297 -11.55265 -11.53596 -11.39799 -11.16040 -11.11058 -11.03650 -10.53443 -10.35649 -10.02009 -9.81051 -8.53456 -7.85319 -5.41779 0.15789 1.30275 1.43449 1.48958 1.50544 1.57024 2.08681 2.14495 2.51817 2.94339 3.30665 3.33221 3.51713 3.62271 3.81015 3.98549 3.99604 4.00715 4.02679 4.07603 4.10681 4.21887 4.28173 4.33095 4.42472 4.44408 4.58437 4.61310 4.66181 4.70790 4.78162 4.85807 4.86815 4.89495 4.92168 5.02281 5.07372 5.08789 5.13644 5.21742 5.24847 5.32499 5.33765 5.37748 5.43823 5.46783 5.56235 5.69009 5.70899 5.78004 6.34402 6.45438 6.95479 7.05333 7.18956 7.86535 8.43537 9.19819 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.002922 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.354757 B = 9581.490457 C =11825.280344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 N -0.259 5.259 4 N -0.287 5.287 5 C 0.047 3.953 6 C -0.090 4.090 7 C -0.158 4.158 8 C -0.161 4.161 9 C -0.180 4.180 10 C -0.051 4.051 11 C 0.591 3.409 12 O -0.566 6.566 13 N -0.700 5.700 14 C 0.140 3.860 15 C -0.101 4.101 16 H 0.079 0.921 17 C -0.096 4.096 18 C -0.130 4.130 19 C 0.178 3.822 20 N -0.607 5.607 21 C -0.269 4.269 22 H 0.067 0.933 23 C -0.043 4.043 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.298 1.298 28 H -0.275 1.275 29 C 0.152 3.848 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.177 0.823 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.055 0.945 48 H -0.007 1.007 49 H 0.038 0.962 50 H 0.249 0.751 51 H 0.055 0.945 52 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -4.041 16.944 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 N -0.047 5.047 4 N -0.120 5.120 5 C -0.109 4.109 6 C -0.110 4.110 7 C -0.196 4.196 8 C -0.199 4.199 9 C -0.209 4.209 10 C -0.179 4.179 11 C 0.376 3.624 12 O -0.446 6.446 13 N -0.351 5.351 14 C 0.016 3.984 15 C -0.121 4.121 16 H 0.098 0.902 17 C -0.134 4.134 18 C -0.169 4.169 19 C 0.052 3.948 20 N -0.330 5.330 21 C -0.399 4.399 22 H 0.085 0.915 23 C -0.239 4.239 24 N -0.579 5.579 25 Si 0.793 3.207 26 H -0.198 1.198 27 H -0.224 1.224 28 H -0.200 1.200 29 C 0.027 3.973 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.195 0.805 41 H 0.249 0.751 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.011 0.989 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.073 0.927 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -14.439 -5.652 17.519 23.395 hybrid contribution 1.412 1.402 -0.924 2.194 sum -13.027 -4.249 16.595 21.521 Atomic orbital electron populations 1.22009 0.92513 1.04647 1.01929 1.22333 0.96978 0.75671 1.06050 1.46024 1.44529 1.12882 1.01243 1.73045 1.18837 1.06222 1.13891 1.21413 1.03508 0.92811 0.93152 1.20130 1.04118 0.86861 0.99857 1.23116 1.01261 0.94761 1.00433 1.23034 0.94067 1.01074 1.01682 1.22373 1.06121 0.97289 0.95089 1.21436 1.12290 0.94488 0.89679 1.16972 0.77943 0.83996 0.83442 1.90754 1.46978 1.21988 1.84902 1.45702 1.60036 1.23502 1.05890 1.21383 1.01108 0.97654 0.78231 1.21734 0.96695 0.98269 0.95407 0.90230 1.21329 1.01069 0.98023 0.93002 1.21999 0.96720 0.98829 0.99352 1.20534 0.91619 0.97276 0.85364 1.44171 1.56973 1.28872 1.03017 1.19423 1.06568 1.07853 1.06055 0.91549 1.26049 0.97204 1.01768 0.98927 1.70152 1.29579 1.38277 1.19925 0.85388 0.77841 0.80114 0.77359 1.19812 1.22400 1.20034 1.21031 0.92030 0.91403 0.92846 0.87800 0.92068 0.93438 0.87576 0.86740 0.85924 0.86503 0.88311 0.89551 0.86661 0.80522 0.75078 0.91946 0.90118 0.92639 0.89899 0.91245 0.92654 0.98885 0.94291 0.94167 0.92700 0.97891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.24 71.98 0.74 -1.89 16 2 C 0.11 2.16 6.46 86.38 0.56 2.72 16 3 N -0.26 -6.48 3.35 -334.68 -1.12 -7.60 16 4 N -0.29 -7.39 11.90 -47.49 -0.57 -7.96 16 5 C 0.05 1.10 6.86 43.05 0.30 1.39 16 6 C -0.09 -1.61 6.33 -11.54 -0.07 -1.69 16 7 C -0.16 -2.27 10.02 30.60 0.31 -1.97 16 8 C -0.16 -2.35 10.23 30.59 0.31 -2.04 16 9 C -0.18 -4.14 9.78 22.66 0.22 -3.92 16 10 C -0.05 -1.30 6.96 40.79 0.28 -1.02 16 11 C 0.59 16.06 7.79 86.59 0.67 16.73 16 12 O -0.57 -17.53 14.76 -4.13 -0.06 -17.59 16 13 N -0.70 -17.26 5.31 -466.64 -2.48 -19.74 16 14 C 0.14 3.55 5.07 86.38 0.44 3.99 16 15 C -0.10 -2.94 2.37 -10.71 -0.03 -2.96 16 16 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.10 -2.77 5.17 30.62 0.16 -2.61 16 18 C -0.13 -4.51 6.08 30.67 0.19 -4.32 16 19 C 0.18 8.33 5.24 86.36 0.45 8.78 16 20 N -0.61 -29.29 2.95 -699.11 -2.06 -31.35 16 21 C -0.27 -14.26 9.50 84.03 0.80 -13.46 16 22 H 0.07 3.37 7.86 -2.91 -0.02 3.35 16 23 C -0.04 -2.37 4.99 84.86 0.42 -1.94 16 24 N -0.93 -55.01 11.56 21.65 0.25 -54.76 16 25 Si 0.97 43.69 29.57 68.60 2.03 45.72 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 C 0.15 5.90 5.60 86.36 0.48 6.38 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 2.31 6.42 -2.39 -0.02 2.29 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.45 7.21 -2.39 -0.02 1.43 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.18 3.28 7.03 -2.91 -0.02 3.26 16 41 H 0.41 9.23 6.77 -92.71 -0.63 8.60 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 48 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 49 H 0.04 2.07 6.58 -2.39 -0.02 2.06 16 50 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 51 H 0.05 2.03 7.14 -2.39 -0.02 2.02 16 52 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -68.41 415.15 2.51 -65.90 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.28 Total: 25.21 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.23 Total: 2.18 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -5.97 Total: -121.42 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.06 Total: -17.59 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.41 2.51 -65.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895411784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.361 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds