Wall clock time and date at job start Wed Apr 1 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46979 * 2 1 4 4 N 1.28470 * 124.88601 * 270.18947 * 3 2 1 5 5 C 1.31813 * 110.07559 * 180.29222 * 4 3 2 6 6 C 1.47706 * 126.51918 * 179.71949 * 5 4 3 7 7 O 1.21576 * 119.99937 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00289 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00373 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.45709 * 35.02651 * 9 8 6 11 11 C 1.53038 * 109.46266 * 275.06906 * 9 8 6 12 12 C 1.53188 * 109.31431 * 178.61359 * 11 9 8 13 13 N 1.46926 * 108.77518 * 54.63280 * 12 11 9 14 14 C 1.36938 * 120.62768 * 126.41280 * 13 12 11 15 15 H 1.08002 * 119.99788 * 207.66172 * 14 13 12 16 16 C 1.38813 * 119.99942 * 27.66726 * 14 13 12 17 17 N 1.31620 * 120.00144 * 17.36277 * 16 14 13 18 18 Si 1.86809 * 119.99683 * 197.36367 * 16 14 13 19 19 H 1.48498 * 109.46937 * 89.99967 * 18 16 14 20 20 H 1.48495 * 109.46603 * 209.99686 * 18 16 14 21 21 H 1.48493 * 109.47260 * 329.99814 * 18 16 14 22 22 C 1.46926 * 118.73961 * 306.39320 * 13 12 11 23 23 C 1.53038 * 109.46070 * 154.99744 * 9 8 6 24 24 H 1.09000 * 109.49877 * 61.43986 * 23 9 8 25 25 C 1.52999 * 109.50088 * 301.37072 * 23 9 8 26 26 C 1.41498 * 106.96017 * 359.72109 * 5 4 3 27 27 C 1.35038 * 124.88832 * 89.99926 * 3 2 1 28 28 C 1.50701 * 126.38232 * 359.97438 * 27 3 2 29 29 C 1.52998 * 117.49804 * 214.71172 * 28 27 3 30 30 C 1.52999 * 60.03076 * 252.52152 * 29 28 27 31 31 H 1.08999 * 109.47183 * 60.00198 * 1 2 3 32 32 H 1.09006 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47305 * 300.00110 * 1 2 3 34 34 H 1.09001 * 109.46808 * 239.99845 * 2 1 3 35 35 H 1.08999 * 109.47183 * 119.99802 * 2 1 3 36 36 H 0.97006 * 119.99910 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.49824 * 298.56689 * 11 9 8 38 38 H 1.09004 * 109.49608 * 58.65888 * 11 9 8 39 39 H 1.09000 * 109.58275 * 294.84667 * 12 11 9 40 40 H 1.08996 * 109.58744 * 174.42221 * 12 11 9 41 41 H 0.97000 * 119.99910 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58252 * 293.82036 * 22 13 12 43 43 H 1.09000 * 109.70336 * 173.46546 * 22 13 12 44 44 H 1.09000 * 109.46865 * 59.99949 * 25 23 9 45 45 H 1.08999 * 109.47609 * 179.97438 * 25 23 9 46 46 H 1.08998 * 109.47006 * 300.00528 * 25 23 9 47 47 H 1.07999 * 127.24902 * 179.97438 * 26 5 4 48 48 H 1.09002 * 115.56176 * 0.40194 * 28 27 3 49 49 H 1.09005 * 117.49514 * 145.02211 * 29 28 27 50 50 H 1.08996 * 117.49652 * 0.02571 * 29 28 27 51 51 H 1.09000 * 117.49744 * 107.48309 * 30 29 28 52 52 H 1.09006 * 117.49750 * 252.47458 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2599 2.0751 -1.0538 5 6 2.6917 3.2741 -0.7169 6 6 3.0807 4.3597 -1.6399 7 8 3.4650 5.4250 -1.1977 8 7 3.0095 4.1694 -2.9722 9 6 3.3948 5.2463 -3.8876 10 1 4.2245 5.8082 -3.4586 11 6 2.2035 6.1823 -4.1040 12 6 2.6201 7.3260 -5.0340 13 7 3.1701 6.7537 -6.2704 14 6 2.6771 7.1277 -7.4920 15 1 2.7283 6.4447 -8.3271 16 6 2.1115 8.3846 -7.6569 17 7 2.3442 9.3321 -6.7735 18 14 1.0199 8.7312 -9.1328 19 1 -0.3901 8.4148 -8.7907 20 1 1.1296 10.1649 -9.5036 21 1 1.4525 7.8894 -10.2770 22 6 4.2595 5.7728 -6.1712 23 6 3.8246 4.6465 -5.2284 24 1 2.9876 4.1055 -5.6699 25 6 4.9940 3.6853 -5.0065 26 6 2.7117 3.3234 0.6971 27 6 2.2757 2.1094 1.1077 28 6 2.1139 1.6534 2.5349 29 6 1.6620 2.6935 3.5619 30 6 3.1078 2.1932 3.5662 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.7025 3.3196 -3.3251 37 1 1.3817 5.6267 -4.5560 38 1 1.8832 6.5910 -3.1456 39 1 3.3789 7.9367 -4.5449 40 1 1.7509 7.9397 -5.2706 41 1 1.9486 10.2102 -6.8885 42 1 5.1520 6.2569 -5.7748 43 1 4.4745 5.3613 -7.1574 44 1 4.6844 2.8857 -4.3335 45 1 5.2995 3.2579 -5.9615 46 1 5.8310 4.2270 -4.5660 47 1 3.0120 4.1544 1.3180 48 1 1.7593 0.6309 2.6646 49 1 1.0100 2.3552 4.3673 50 1 1.4813 3.7074 3.2052 51 1 3.8784 2.8781 3.2121 52 1 3.4072 1.5262 4.3747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942118351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:04 Heat of formation + Delta-G solvation = 80.459509 kcal Electronic energy + Delta-G solvation = -30807.227009 eV Core-core repulsion = 26809.587878 eV Total energy + Delta-G solvation = -3997.639132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.89026 -39.48916 -37.63342 -37.44531 -34.90271 -34.43587 -32.57128 -31.13924 -30.59990 -30.39325 -29.46533 -25.90008 -25.51736 -24.49367 -23.82876 -22.79339 -22.60285 -21.66850 -20.88522 -20.48730 -19.64664 -18.98322 -17.79331 -16.80464 -16.51165 -16.08152 -15.69744 -15.45867 -14.92750 -14.77318 -14.59816 -14.41096 -13.91525 -13.77841 -13.69493 -13.44716 -13.17370 -12.95352 -12.73534 -12.59211 -12.56750 -12.13782 -12.01130 -11.96470 -11.83920 -11.42574 -11.37637 -11.24529 -11.20342 -11.00582 -10.75036 -10.74336 -10.61053 -10.26653 -10.15536 -9.97524 -9.83782 -9.71449 -9.41163 -9.22259 -8.93248 -8.57469 -8.34542 -6.63228 -5.73217 -3.15768 1.52083 1.92515 2.19023 3.40891 3.45561 3.48255 3.49586 3.49832 3.64595 3.96380 4.09588 4.41399 4.43822 4.53654 4.54214 4.56851 4.64521 4.71684 5.02711 5.17000 5.20252 5.23314 5.24095 5.37815 5.41125 5.47223 5.50796 5.57722 5.59297 5.60056 5.69530 5.71186 5.83152 5.99575 6.07837 6.19615 6.27871 6.34029 6.36683 6.48989 6.54320 6.57497 6.70180 6.74986 6.86777 7.03553 7.04616 7.44976 7.67902 7.74903 7.84815 7.96525 8.49752 8.52149 9.26224 9.89797 10.46570 11.35217 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002233 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.355829 B =12534.678229 C =12710.709078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.278 5.278 4 N -0.260 5.260 5 C -0.006 4.006 6 C 0.599 3.401 7 O -0.534 6.534 8 N -0.708 5.708 9 C 0.157 3.843 10 H 0.083 0.917 11 C -0.148 4.148 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.155 3.845 23 C -0.114 4.114 24 H 0.071 0.929 25 C -0.142 4.142 26 C -0.178 4.178 27 C 0.044 3.956 28 C -0.098 4.098 29 C -0.162 4.162 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.400 0.600 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.021 0.979 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.159 0.841 48 H 0.114 0.886 49 H 0.101 0.899 50 H 0.103 0.897 51 H 0.103 0.897 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -22.025 20.035 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.066 5.066 4 N -0.095 5.095 5 C -0.167 4.167 6 C 0.383 3.617 7 O -0.408 6.408 8 N -0.357 5.357 9 C 0.054 3.946 10 H 0.101 0.899 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.028 3.972 23 C -0.135 4.135 24 H 0.089 0.911 25 C -0.200 4.200 26 C -0.206 4.206 27 C -0.080 4.080 28 C -0.117 4.117 29 C -0.199 4.199 30 C -0.200 4.200 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.234 0.766 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.176 0.824 48 H 0.132 0.868 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.121 0.879 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.388 -21.846 19.344 29.212 hybrid contribution -0.683 0.170 -0.198 0.731 sum -2.071 -21.677 19.146 28.995 Atomic orbital electron populations 1.22185 0.93451 1.03510 1.03788 1.21959 0.96011 0.77376 1.05184 1.45412 1.46576 1.12232 1.02414 1.73537 1.17554 1.04908 1.13507 1.22021 1.07494 0.93056 0.94096 1.16885 0.77859 0.85257 0.81742 1.90801 1.47276 1.25650 1.77112 1.46141 1.66374 1.18023 1.05197 1.21094 0.98144 0.87193 0.88165 0.89893 1.22585 0.97021 0.99008 1.00179 1.20767 0.98922 0.91271 0.84294 1.44109 1.37010 1.47663 1.02723 1.19184 1.34029 0.96402 0.88596 0.91637 1.25047 1.01595 0.95061 0.97985 1.70043 1.45154 1.02329 1.36999 0.86295 0.80970 0.77100 0.82434 1.21505 1.21799 1.20470 1.20886 0.90810 0.89176 0.96317 1.21960 0.98025 0.97991 0.95515 0.91081 1.21770 0.98445 0.98851 1.00925 1.21392 1.07762 0.97784 0.93670 1.20378 1.06007 0.92564 0.89049 1.20270 1.07163 0.99113 0.85198 1.23102 0.97676 0.99123 1.00012 1.23115 0.93342 1.03545 0.99997 0.91165 0.90071 0.91674 0.87911 0.88347 0.76559 0.92666 0.92723 0.96090 0.89229 0.93612 0.96159 0.92410 0.93396 0.92801 0.92901 0.82378 0.86798 0.88041 0.87871 0.87885 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 37.16 0.38 -0.51 16 2 C 0.11 0.68 6.74 -4.04 -0.03 0.65 16 3 N -0.28 -2.85 3.30 -57.11 -0.19 -3.03 16 4 N -0.26 -3.42 11.67 33.42 0.39 -3.03 16 5 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 6 C 0.60 10.46 7.79 -12.39 -0.10 10.36 16 7 O -0.53 -11.03 16.59 5.30 0.09 -10.94 16 8 N -0.71 -11.57 4.36 -54.76 -0.24 -11.81 16 9 C 0.16 2.93 1.88 -67.89 -0.13 2.80 16 10 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 11 C -0.15 -3.11 5.65 -26.61 -0.15 -3.26 16 12 C 0.17 4.36 5.31 -3.71 -0.02 4.34 16 13 N -0.59 -15.15 2.99 -172.33 -0.52 -15.66 16 14 C -0.25 -7.01 9.59 -15.06 -0.14 -7.16 16 15 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 17 N -0.90 -26.74 11.19 55.49 0.62 -26.12 16 18 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.16 3.29 5.80 -3.71 -0.02 3.27 16 23 C -0.11 -2.00 2.46 -90.50 -0.22 -2.23 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 25 C -0.14 -2.06 9.03 37.16 0.34 -1.72 16 26 C -0.18 -2.30 9.86 -39.37 -0.39 -2.69 16 27 C 0.04 0.45 6.60 -82.21 -0.54 -0.10 16 28 C -0.10 -0.66 5.94 -91.74 -0.54 -1.20 16 29 C -0.16 -0.98 10.05 -26.73 -0.27 -1.24 16 30 C -0.16 -0.96 10.05 -26.70 -0.27 -1.23 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.34 7.12 -51.93 -0.37 -0.03 16 36 H 0.40 5.83 8.03 -40.82 -0.33 5.50 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 2.50 6.04 -51.93 -0.31 2.18 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 44 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 48 H 0.11 0.53 7.17 -51.93 -0.37 0.16 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.73 7.97 -51.93 -0.41 0.32 16 51 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 52 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 417.27 15.07 6.29 6.29 Total: -1.00 -33.67 417.27 -10.23 -43.90 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.87 Total: 4.04 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.78 Total: -0.63 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.07 Total: -59.66 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.67 -10.23 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942118351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.361 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds